Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:42935942-43898667

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Olfr444 6 42955500 to 42956432 932 + protein coding gene olfactory receptor 444
Tssr56051 6 42980665 to 42980666 1 + TSS region transcription start site region 56051
Gm17472 6 42980690 to 42981150 460 + gene segment predicted gene, 17472
Gm34905 6 43014502 to 43066903 52401 - lncRNA gene predicted gene, 34905
Tssr56052 6 43067287 to 43067314 27 + TSS region transcription start site region 56052
Gm38799 6 43067459 to 43090458 22999 + lncRNA gene predicted gene, 38799
Tssr60678 6 43076982 to 43076983 1 - TSS region transcription start site region 60678
Gm20730 6 43081518 to 43082097 579 - gene segment predicted gene, 20730
Olfr443-ps1 6 43094435 to 43095346 911 + pseudogene olfactory receptor 443, pseudogene 1
Olfr442-ps1 6 43099400 to 43099715 315 + pseudogene olfactory receptor 442, pseudogene 1
Olfr441 6 43115744 to 43116676 932 + protein coding gene olfactory receptor 441
Olfr440-ps1 6 43122354 to 43123263 909 + pseudogene olfactory receptor 440, pseudogene 1
Olfr439-ps1 6 43138133 to 43138439 306 + pseudogene olfactory receptor 439, pseudogene 1
Olfr237-ps1 6 43153307 to 43154239 932 + protein coding gene olfactory receptor 237, pseudogene 1
1700024N05Rik 6 43162454 to 43174858 12404 - lncRNA gene RIKEN cDNA 1700024N05 gene
Olfr437 6 43167060 to 43167992 932 + protein coding gene olfactory receptor 437
Olfr13 6 43173988 to 43174920 932 + protein coding gene olfactory receptor 13
Olfr436-ps1 6 43187171 to 43187696 525 + pseudogene olfactory receptor 436, pseudogene 1
Olfr435 6 43201646 to 43202587 941 + protein coding gene olfactory receptor 435
Gm21827 6 43210333 to 43210755 422 + pseudogene predicted gene, 21827
Olfr434 6 43216915 to 43217880 965 + protein coding gene olfactory receptor 434
Olfr47 6 43235610 to 43236575 965 + protein coding gene olfactory receptor 47
Gm44731 6 43264542 to 43265855 1313 - antisense lncRNA gene predicted gene 44731
Cpgi17342 6 43265260 to 43265888 628 CpG island CpG island 17342
Tssr56053 6 43265616 to 43265681 65 + TSS region transcription start site region 56053
Arhgef5 6 43265644 to 43289320 23676 + protein coding gene Rho guanine nucleotide exchange factor (GEF) 5
Tssr56054 6 43265684 to 43265712 28 + TSS region transcription start site region 56054
Tssr60679 6 43266596 to 43266610 14 - TSS region transcription start site region 60679
Gm44253 6 43277755 to 43278382 627 + unclassified gene predicted gene, 44253
Nobox 6 43303674 to 43309554 5880 - protein coding gene NOBOX oogenesis homeobox
Cpgi17343 6 43309502 to 43309664 162 CpG island CpG island 17343
Tpk1 6 43345001 to 43666278 321277 - protein coding gene thiamine pyrophosphokinase
Gm15550 6 43373805 to 43375549 1744 + pseudogene predicted gene 15550
Gm35113 6 43376094 to 43392531 16437 + lncRNA gene predicted gene, 35113
Tssr56055 6 43382466 to 43382552 86 + TSS region transcription start site region 56055
Gm38800 6 43415942 to 43418667 2725 + lncRNA gene predicted gene, 38800
Tssr56056 6 43462555 to 43462557 2 + TSS region transcription start site region 56056
9430018G01Rik 6 43467979 to 43474318 6339 + antisense lncRNA gene RIKEN cDNA 9430018G01 gene
Tssr56057 6 43598214 to 43598220 6 + TSS region transcription start site region 56057
D6Mit350 6 43624574 to 43624746 172 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 350
Cpgi17344 6 43665619 to 43666479 860 CpG island CpG island 17344
Tssr60680 6 43666134 to 43666145 11 - TSS region transcription start site region 60680
Tssr60681 6 43666158 to 43666224 66 - TSS region transcription start site region 60681
Gm46984 6 43678806 to 43679721 915 - lncRNA gene predicted gene, 46984
Tssr60682 6 43678977 to 43678978 1 - TSS region transcription start site region 60682
Tssr1827 6 43680402 to 43680404 2 + TSS region transcription start site region 1827
D6Mit76 6 43728877 to 43728991 114 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 76
Gm5990 6 43766565 to 43767310 745 - pseudogene predicted gene 5990
Ogrq3 6 43826813 to 77811523 33984710 QTL overall growth rate QTL 3
Pwbwq10 6 43826813 to 77811523 33984710 QTL post-weaning body weight QTL 10
Pwbwq11 6 43826813 to 77811523 33984710 QTL post-weaning body weight QTL 11
Pwbwq12 6 43826813 to 77811523 33984710 QTL post-weaning body weight QTL 12
Pwgrq16 6 43826813 to 77811523 33984710 QTL post-weaning growth rate QTL 16
Pwgrq5 6 43826813 to 77811523 33984710 QTL pre-weaning growth rate QTL 5
Gm35163 6 43839255 to 43852378 13123 + lncRNA gene predicted gene, 35163
Gm7783 6 43856124 to 43856904 780 - pseudogene predicted gene 7783
Gm22939 6 43887194 to 43887324 130 + snoRNA gene predicted gene, 22939