Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:42898831-52008868

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1172 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bmiq3 6 4503823 to 48726677 44222854 QTL body mass index QTL 3
Axtq2 6 4503823 to 48726677 44222854 QTL anxiety QTL 2
Aaj2 6 4503823 to 48726677 44222854 QTL anxiety in A/J 2
Bmiq2 6 4503823 to 45314181 40810358 QTL body mass index QTL 2
Olfr447 6 42911525 to 42912457 932 + protein coding gene olfactory receptor 447
Olfr446 6 42927233 to 42928159 926 + protein coding gene olfactory receptor 446
Olrf445-ps1 6 42934594 to 42934907 313 + pseudogene olfactory receptor 445, pseudogene 1
Olfr444 6 42955500 to 42956432 932 + protein coding gene olfactory receptor 444
Tssr56051 6 42980665 to 42980666 1 + TSS region transcription start site region 56051
Gm17472 6 42980690 to 42981150 460 + gene segment predicted gene, 17472
Gm34905 6 43014502 to 43066903 52401 - lncRNA gene predicted gene, 34905
Tssr56052 6 43067287 to 43067314 27 + TSS region transcription start site region 56052
Gm38799 6 43067459 to 43090458 22999 + lncRNA gene predicted gene, 38799
Tssr60678 6 43076982 to 43076983 1 - TSS region transcription start site region 60678
Gm20730 6 43081518 to 43082097 579 - gene segment predicted gene, 20730
Olfr443-ps1 6 43094435 to 43095346 911 + pseudogene olfactory receptor 443, pseudogene 1
Olfr442-ps1 6 43099400 to 43099715 315 + pseudogene olfactory receptor 442, pseudogene 1
Olfr441 6 43115744 to 43116676 932 + protein coding gene olfactory receptor 441
Olfr440-ps1 6 43122354 to 43123263 909 + pseudogene olfactory receptor 440, pseudogene 1
Olfr439-ps1 6 43138133 to 43138439 306 + pseudogene olfactory receptor 439, pseudogene 1
Olfr237-ps1 6 43153307 to 43154239 932 + protein coding gene olfactory receptor 237, pseudogene 1
1700024N05Rik 6 43162454 to 43174858 12404 - lncRNA gene RIKEN cDNA 1700024N05 gene
Olfr437 6 43167060 to 43167992 932 + protein coding gene olfactory receptor 437
Olfr13 6 43173988 to 43174920 932 + protein coding gene olfactory receptor 13
Olfr436-ps1 6 43187171 to 43187696 525 + pseudogene olfactory receptor 436, pseudogene 1
Olfr435 6 43201646 to 43202587 941 + protein coding gene olfactory receptor 435
Gm21827 6 43210333 to 43210755 422 + pseudogene predicted gene, 21827
Olfr434 6 43216915 to 43217880 965 + protein coding gene olfactory receptor 434
Olfr47 6 43235610 to 43236575 965 + protein coding gene olfactory receptor 47
Gm44731 6 43264542 to 43265855 1313 - antisense lncRNA gene predicted gene 44731
Cpgi17342 6 43265260 to 43265888 628 CpG island CpG island 17342
Tssr56053 6 43265616 to 43265681 65 + TSS region transcription start site region 56053
Arhgef5 6 43265644 to 43289320 23676 + protein coding gene Rho guanine nucleotide exchange factor (GEF) 5
Tssr56054 6 43265684 to 43265712 28 + TSS region transcription start site region 56054
Tssr60679 6 43266596 to 43266610 14 - TSS region transcription start site region 60679
Gm44253 6 43277755 to 43278382 627 + unclassified gene predicted gene, 44253
Nobox 6 43303674 to 43309554 5880 - protein coding gene NOBOX oogenesis homeobox
Cpgi17343 6 43309502 to 43309664 162 CpG island CpG island 17343
Tpk1 6 43345001 to 43666278 321277 - protein coding gene thiamine pyrophosphokinase
Gm15550 6 43373805 to 43375549 1744 + pseudogene predicted gene 15550
Gm35113 6 43376094 to 43392531 16437 + lncRNA gene predicted gene, 35113
Tssr56055 6 43382466 to 43382552 86 + TSS region transcription start site region 56055
Gm38800 6 43415942 to 43418667 2725 + lncRNA gene predicted gene, 38800
Tssr56056 6 43462555 to 43462557 2 + TSS region transcription start site region 56056
9430018G01Rik 6 43467979 to 43474318 6339 + antisense lncRNA gene RIKEN cDNA 9430018G01 gene
Tssr56057 6 43598214 to 43598220 6 + TSS region transcription start site region 56057
D6Mit350 6 43624574 to 43624746 172 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 350
Cpgi17344 6 43665619 to 43666479 860 CpG island CpG island 17344
Tssr60680 6 43666134 to 43666145 11 - TSS region transcription start site region 60680
Tssr60681 6 43666158 to 43666224 66 - TSS region transcription start site region 60681
Gm46984 6 43678806 to 43679721 915 - lncRNA gene predicted gene, 46984
Tssr60682 6 43678977 to 43678978 1 - TSS region transcription start site region 60682
Tssr1827 6 43680402 to 43680404 2 + TSS region transcription start site region 1827
D6Mit76 6 43728877 to 43728991 114 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 76
Gm5990 6 43766565 to 43767310 745 - pseudogene predicted gene 5990
Ogrq3 6 43826813 to 77811523 33984710 QTL overall growth rate QTL 3
Pwbwq12 6 43826813 to 77811523 33984710 QTL post-weaning body weight QTL 12
Pwbwq10 6 43826813 to 77811523 33984710 QTL post-weaning body weight QTL 10
Pwbwq11 6 43826813 to 77811523 33984710 QTL post-weaning body weight QTL 11
Pwgrq16 6 43826813 to 77811523 33984710 QTL post-weaning growth rate QTL 16
Pwgrq5 6 43826813 to 77811523 33984710 QTL pre-weaning growth rate QTL 5
Gm35163 6 43839255 to 43852378 13123 + lncRNA gene predicted gene, 35163
Gm7783 6 43856124 to 43856904 780 - pseudogene predicted gene 7783
Gm22939 6 43887194 to 43887324 130 + snoRNA gene predicted gene, 22939
Gm35216 6 44080488 to 44083355 2867 - lincRNA gene predicted gene, 35216
Tssr60683 6 44083307 to 44083316 9 - TSS region transcription start site region 60683
Tssr60684 6 44083328 to 44083345 17 - TSS region transcription start site region 60684
Tssr60685 6 44083348 to 44083366 18 - TSS region transcription start site region 60685
Cia6c 6 44465871 to 71119467 26653596 QTL collagen induced arthritis QTL 6c
D6Mit207 6 44465871 to 44466016 145 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 207
Gm44211 6 44667291 to 44667435 144 - pseudogene predicted gene, 44211
Tssr56058 6 44792927 to 44792929 2 + TSS region transcription start site region 56058
Gm44212 6 44821571 to 44822467 896 + pseudogene predicted gene, 44212
Gm44213 6 44965923 to 44966625 702 + pseudogene predicted gene, 44213
Tssr56059 6 45059582 to 45059638 56 + TSS region transcription start site region 56059
Cpgi17345 6 45059585 to 45059896 311 CpG island CpG island 17345
Tssr56060 6 45060036 to 45060067 31 + TSS region transcription start site region 56060
Cntnap2 6 45060061 to 47301393 2241332 + protein coding gene contactin associated protein-like 2
Tssr56061 6 45060100 to 45060109 9 + TSS region transcription start site region 56061
Tssr56062 6 45060113 to 45060124 11 + TSS region transcription start site region 56062
Tssr56063 6 45060183 to 45060247 64 + TSS region transcription start site region 56063
B230112I24Rik 6 45073566 to 45074794 1228 + unclassified gene RIKEN cDNA B230112I24 gene
Gm43879 6 45080746 to 45084505 3759 + unclassified gene predicted gene, 43879
Tssr56064 6 45105097 to 45105100 3 + TSS region transcription start site region 56064
Gm43872 6 45135270 to 45137482 2212 + unclassified gene predicted gene, 43872
Tssr56065 6 45158925 to 45158930 5 + TSS region transcription start site region 56065
Gm43885 6 45194876 to 45197417 2541 + unclassified gene predicted gene, 43885
Gm43889 6 45203810 to 45207490 3680 + unclassified gene predicted gene, 43889
9630039A02Rik 6 45229791 to 45233772 3981 unclassified gene RIKEN cDNA 9630039A02 gene
Gm43874 6 45245637 to 45248434 2797 + unclassified gene predicted gene, 43874
Tssr56066 6 45267291 to 45267295 4 + TSS region transcription start site region 56066
Tssr56067 6 45285165 to 45285183 18 + TSS region transcription start site region 56067
Gm43869 6 45301103 to 45302507 1404 + unclassified gene predicted gene, 43869
6330419E04Rik 6 45306124 to 45307386 1262 + unclassified gene RIKEN cDNA 6330419E04 gene
Pgia19 6 45314059 to 87426034 42111975 QTL proteoglycan induced arthritis 19
D6Mit223 6 45314059 to 45314181 122 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 223
Obrq3 6 45314059 to 45314181 122 QTL obesity resistance QTL 3
D6Dcr6 6 45314060 to 45314181 121 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 6
Tssr56068 6 45317829 to 45317833 4 + TSS region transcription start site region 56068
Gm43882 6 45326402 to 45328665 2263 + unclassified gene predicted gene, 43882
Gm43884 6 45329238 to 45329796 558 + unclassified gene predicted gene, 43884
Gm43880 6 45413235 to 45415396 2161 + unclassified gene predicted gene, 43880
Gm43876 6 45529083 to 45532311 3228 + unclassified gene predicted gene, 43876
Tssr56069 6 45545880 to 45545886 6 + TSS region transcription start site region 56069
Tssr1828 6 45808887 to 45808889 2 - TSS region transcription start site region 1828
Gm18483 6 45894474 to 45895029 555 - pseudogene predicted gene, 18483
Gm43886 6 45901938 to 45904323 2385 + unclassified gene predicted gene, 43886
Gm22839 6 46037776 to 46038079 303 + unclassified non-coding RNA gene predicted gene, 22839
Tssr56070 6 46041061 to 46041064 3 + TSS region transcription start site region 56070
Gm43871 6 46041951 to 46043905 1954 + unclassified gene predicted gene, 43871
Gm43873 6 46045143 to 46049080 3937 + unclassified gene predicted gene, 43873
Gm43877 6 46049158 to 46051395 2237 + unclassified gene predicted gene, 43877
Gm43888 6 46072409 to 46074995 2586 + unclassified gene predicted gene, 43888
Gm43887 6 46076179 to 46079364 3185 + unclassified gene predicted gene, 43887
Gm43870 6 46134102 to 46138470 4368 + unclassified gene predicted gene, 43870
Tssr60686 6 46147891 to 46147902 11 - TSS region transcription start site region 60686
D6Mit349 6 46184812 to 46184935 123 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 349
Tssr1829 6 46213952 to 46213955 3 + TSS region transcription start site region 1829
Gm43881 6 46413756 to 46416285 2529 + unclassified gene predicted gene, 43881
Gm25161 6 46481709 to 46481840 131 - snoRNA gene predicted gene, 25161
Gm43875 6 46486643 to 46489117 2474 + unclassified gene predicted gene, 43875
Rbpj-ps3 6 46529354 to 46530794 1440 - pseudogene recombination signal binding protein for immunoglobulin kappa J region, pseudogene 3
Tssr60687 6 46530186 to 46530203 17 - TSS region transcription start site region 60687
Tssr56071 6 46563303 to 46563308 5 + TSS region transcription start site region 56071
Gm18484 6 46637292 to 46638282 990 - pseudogene predicted gene, 18484
Gm35931 6 46778409 to 46778856 447 - pseudogene predicted gene, 35931
Gm43883 6 46785953 to 46789702 3749 + unclassified gene predicted gene, 43883
D6Mit273 6 46935985 to 46936108 123 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 273
Gm38801 6 46952382 to 46958234 5852 - lncRNA gene predicted gene, 38801
Gm35875 6 47006550 to 47040804 34254 - lncRNA gene predicted gene, 35875
Tssr60688 6 47044578 to 47044585 7 - TSS region transcription start site region 60688
Tssr56072 6 47044594 to 47044619 25 + TSS region transcription start site region 56072
Cpgi17346 6 47044710 to 47045070 360 CpG island CpG island 17346
Tssr56073 6 47045022 to 47045027 5 + TSS region transcription start site region 56073
Tssr56074 6 47045045 to 47045061 16 + TSS region transcription start site region 56074
Gm6352 6 47045156 to 47046286 1130 + pseudogene predicted gene 6352
D6Mit224 6 47068326 to 47068474 148 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 224
D6Mit75 6 47112360 to 47112509 149 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 75
Gm35798 6 47120009 to 47124958 4949 - lncRNA gene predicted gene, 35798
4930432J01Rik 6 47139211 to 47164232 25021 unclassified non-coding RNA gene RIKEN cDNA 4930432J01 gene
D6Mit1008a 6 47144202 to 47144315 113 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 1008a
D6Mit1008b 6 47163130 to 47163243 113 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 1008b
Tssr60689 6 47190433 to 47190442 9 - TSS region transcription start site region 60689
Gm35280 6 47191384 to 47259162 67778 - lncRNA gene predicted gene, 35280
Gm35565 6 47227498 to 47230585 3087 + lncRNA gene predicted gene, 35565
Tssr56075 6 47244359 to 47244417 58 + TSS region transcription start site region 56075
Tssr56076 6 47244418 to 47244437 19 + TSS region transcription start site region 56076
Tssr56077 6 47244438 to 47244449 11 + TSS region transcription start site region 56077
Tssr60690 6 47302666 to 47302667 1 - TSS region transcription start site region 60690
Gm18584 6 47432123 to 47432820 697 - pseudogene predicted gene, 18584
Cpgi17347 6 47453476 to 47455224 1748 CpG island CpG island 17347
Cul1 6 47453737 to 47526139 72402 + protein coding gene cullin 1
A930035D04Rik 6 47453776 to 47454320 544 - unclassified gene RIKEN cDNA A930035D04 gene
Tssr56078 6 47453831 to 47453868 37 + TSS region transcription start site region 56078
Tssr56079 6 47453874 to 47453907 33 + TSS region transcription start site region 56079
Tssr56080 6 47453913 to 47453929 16 + TSS region transcription start site region 56080
Tssr56081 6 47453954 to 47453992 38 + TSS region transcription start site region 56081
Tssr56082 6 47454006 to 47454017 11 + TSS region transcription start site region 56082
Tssr56083 6 47454340 to 47454423 83 + TSS region transcription start site region 56083
Tssr56084 6 47454433 to 47454445 12 + TSS region transcription start site region 56084
Tssr60691 6 47454609 to 47454627 18 - TSS region transcription start site region 60691
Tssr60692 6 47454637 to 47454648 11 - TSS region transcription start site region 60692
Tssr56085 6 47454682 to 47454701 19 + TSS region transcription start site region 56085
Tssr56086 6 47454702 to 47454719 17 + TSS region transcription start site region 56086
Tssr60693 6 47454842 to 47454866 24 - TSS region transcription start site region 60693
Tssr56087 6 47454985 to 47454994 9 + TSS region transcription start site region 56087
Tssr56088 6 47454999 to 47455008 9 + TSS region transcription start site region 56088
Tssr60694 6 47455051 to 47455069 18 - TSS region transcription start site region 60694
9430013L14Rik 6 47463339 to 47464553 1214 unclassified gene RIKEN cDNA 9430013L14 gene
Tssr56089 6 47468129 to 47468132 3 + TSS region transcription start site region 56089
Tssr56090 6 47468350 to 47468355 5 + TSS region transcription start site region 56090
D6Dcr7 6 47469253 to 47469361 108 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 7
D6Mit352 6 47469256 to 47469364 108 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 352
Tssr56091 6 47480787 to 47480794 7 + TSS region transcription start site region 56091
Tssr56092 6 47510174 to 47510175 1 + TSS region transcription start site region 56092
Tssr56093 6 47522332 to 47522336 4 + TSS region transcription start site region 56093
Ezh2 6 47530274 to 47595340 65066 - protein coding gene enhancer of zeste 2 polycomb repressive complex 2 subunit
Tssr56094 6 47545696 to 47545716 20 + TSS region transcription start site region 56094
Gm26625 6 47546666 to 47551704 5038 + lincRNA gene predicted gene, 26625
Tssr60695 6 47550970 to 47550981 11 - TSS region transcription start site region 60695
Tssr60696 6 47556098 to 47556114 16 - TSS region transcription start site region 60696
Tssr60697 6 47563265 to 47563280 15 - TSS region transcription start site region 60697
D6Mit351 6 47574728 to 47574837 109 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 351
D430047D06Rik 6 47580282 to 47583708 3426 unclassified gene RIKEN cDNA D430047D06 gene
Tssr1830 6 47584175 to 47584182 7 - TSS region transcription start site region 1830
Gm44282 6 47585216 to 47585405 189 + pseudogene predicted gene, 44282
Cpgi17348 6 47594102 to 47595767 1665 CpG island CpG island 17348
Tssr60698 6 47594777 to 47594788 11 - TSS region transcription start site region 60698
Tssr60699 6 47594967 to 47595047 80 - TSS region transcription start site region 60699
Tssr60700 6 47595053 to 47595065 12 - TSS region transcription start site region 60700
Tssr56095 6 47595161 to 47595217 56 + TSS region transcription start site region 56095
F830010H11Rik 6 47595189 to 47597526 2337 unclassified gene RIKEN cDNA F830010H11 gene
Gm44141 6 47635297 to 47636879 1582 + unclassified gene predicted gene, 44141
Tssr56096 6 47636577 to 47636607 30 + TSS region transcription start site region 56096
Tssr60701 6 47636870 to 47636883 13 - TSS region transcription start site region 60701
Tssr60702 6 47636891 to 47636914 23 - TSS region transcription start site region 60702
Gm25283 6 47637143 to 47637219 76 + unclassified non-coding RNA gene predicted gene, 25283
Gm40371 6 47644607 to 47651846 7239 - lncRNA gene predicted gene, 40371
Cpgi17349 6 47650694 to 47651619 925 CpG island CpG island 17349
Gm40369 6 47652126 to 47656124 3998 + protein coding gene predicted gene, 40369