Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:42560333-43860755

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145 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm38798 6 42578231 to 42581779 3548 - lncRNA gene predicted gene, 38798
Tssr56046 6 42585217 to 42585226 9 + TSS region transcription start site region 56046
Tssr56047 6 42585350 to 42585375 25 + TSS region transcription start site region 56047
Tssr60620 6 42585740 to 42585753 13 - TSS region transcription start site region 60620
Tssr60621 6 42585758 to 42585773 15 - TSS region transcription start site region 60621
Tssr60622 6 42585804 to 42585832 28 - TSS region transcription start site region 60622
Tssr60623 6 42585860 to 42585881 21 - TSS region transcription start site region 60623
Tssr60624 6 42585902 to 42585908 6 - TSS region transcription start site region 60624
Tssr56048 6 42585960 to 42585971 11 + TSS region transcription start site region 56048
Tssr60625 6 42585970 to 42585981 11 - TSS region transcription start site region 60625
Tssr60626 6 42585985 to 42585997 12 - TSS region transcription start site region 60626
Tssr60627 6 42586001 to 42586006 5 - TSS region transcription start site region 60627
Tssr56049 6 42586010 to 42586045 35 + TSS region transcription start site region 56049
Tssr60628 6 42586145 to 42586172 27 - TSS region transcription start site region 60628
Tssr60629 6 42586200 to 42586212 12 - TSS region transcription start site region 60629
Tssr60630 6 42586269 to 42586280 11 - TSS region transcription start site region 60630
Tssr60631 6 42586313 to 42586322 9 - TSS region transcription start site region 60631
Tssr60632 6 42586365 to 42586368 3 - TSS region transcription start site region 60632
Tssr60633 6 42586391 to 42586398 7 - TSS region transcription start site region 60633
Tssr60634 6 42586404 to 42586407 3 - TSS region transcription start site region 60634
Tssr60635 6 42586470 to 42586479 9 - TSS region transcription start site region 60635
Tssr60636 6 42586575 to 42586578 3 - TSS region transcription start site region 60636
Tssr60637 6 42586831 to 42586842 11 - TSS region transcription start site region 60637
Tssr60638 6 42586871 to 42586885 14 - TSS region transcription start site region 60638
Tssr60639 6 42586922 to 42586937 15 - TSS region transcription start site region 60639
Tssr60640 6 42587177 to 42587183 6 - TSS region transcription start site region 60640
Tcaf3 6 42587213 to 42597372 10159 - protein coding gene TRPM8 channel-associated factor 3
Tssr60641 6 42589788 to 42589798 10 - TSS region transcription start site region 60641
Tssr60642 6 42589867 to 42589871 4 - TSS region transcription start site region 60642
Tssr60643 6 42590848 to 42590853 5 - TSS region transcription start site region 60643
Tssr60644 6 42591035 to 42591045 10 - TSS region transcription start site region 60644
Tssr60645 6 42591897 to 42591907 10 - TSS region transcription start site region 60645
Tssr60646 6 42591928 to 42591933 5 - TSS region transcription start site region 60646
Tssr60647 6 42592356 to 42592362 6 - TSS region transcription start site region 60647
Tssr60648 6 42593276 to 42593293 17 - TSS region transcription start site region 60648
Tssr1824 6 42593338 to 42593341 3 - TSS region transcription start site region 1824
Tssr60649 6 42593451 to 42593456 5 - TSS region transcription start site region 60649
Tssr60650 6 42593523 to 42593534 11 - TSS region transcription start site region 60650
Tssr60651 6 42593997 to 42594004 7 - TSS region transcription start site region 60651
Tssr60652 6 42594113 to 42594124 11 - TSS region transcription start site region 60652
Tssr60653 6 42597301 to 42597315 14 - TSS region transcription start site region 60653
Tssr60654 6 42597376 to 42597384 8 - TSS region transcription start site region 60654
Tssr60655 6 42597390 to 42597397 7 - TSS region transcription start site region 60655
Tssr60656 6 42597402 to 42597412 10 - TSS region transcription start site region 60656
Tssr1825 6 42597456 to 42597461 5 - TSS region transcription start site region 1825
Tssr1826 6 42597494 to 42597503 9 - TSS region transcription start site region 1826
Tssr60657 6 42597548 to 42597559 11 - TSS region transcription start site region 60657
Tssr60658 6 42597568 to 42597581 13 - TSS region transcription start site region 60658
Tssr60659 6 42597628 to 42597649 21 - TSS region transcription start site region 60659
Tssr60660 6 42597662 to 42597679 17 - TSS region transcription start site region 60660
Tssr60661 6 42597686 to 42597702 16 - TSS region transcription start site region 60661
Tssr60662 6 42597712 to 42597720 8 - TSS region transcription start site region 60662
Tssr60663 6 42597831 to 42597838 7 - TSS region transcription start site region 60663
Tssr60664 6 42598120 to 42598137 17 - TSS region transcription start site region 60664
Tssr60665 6 42598967 to 42598970 3 - TSS region transcription start site region 60665
Tssr60666 6 42601616 to 42601623 7 - TSS region transcription start site region 60666
Tssr60667 6 42601848 to 42601863 15 - TSS region transcription start site region 60667
Tcaf2 6 42623043 to 42645041 21998 - protein coding gene TRPM8 channel-associated factor 2
Tssr60668 6 42644920 to 42644924 4 - TSS region transcription start site region 60668
Tssr60669 6 42645028 to 42645073 45 - TSS region transcription start site region 60669
Tssr60670 6 42645079 to 42645097 18 - TSS region transcription start site region 60670
Tcaf1 6 42668002 to 42710088 42086 - protein coding gene TRPM8 channel-associated factor 1
Tssr60671 6 42669858 to 42669872 14 - TSS region transcription start site region 60671
Cpgi17340 6 42692482 to 42693164 682 CpG island CpG island 17340
Tssr60672 6 42693030 to 42693070 40 - TSS region transcription start site region 60672
Tssr60673 6 42693071 to 42693082 11 - TSS region transcription start site region 60673
Tssr60674 6 42693091 to 42693100 9 - TSS region transcription start site region 60674
Cpgi17341 6 42709766 to 42710164 398 CpG island CpG island 17341
Tssr60675 6 42710001 to 42710015 14 - TSS region transcription start site region 60675
Tssr60676 6 42710036 to 42710120 84 - TSS region transcription start site region 60676
Olfr454-ps1 6 42721916 to 42722263 347 + pseudogene olfactory receptor 454, pseudogene 1
Gm44030 6 42725591 to 42726022 431 + pseudogene predicted gene, 44030
Gm44032 6 42733934 to 42734099 165 - pseudogene predicted gene, 44032
Olfr453 6 42744039 to 42744992 953 + protein coding gene olfactory receptor 453
Gm44034 6 42745187 to 42745250 63 + pseudogene predicted gene, 44034
Olfr38 6 42762054 to 42763007 953 + protein coding gene olfactory receptor 38
Tssr60677 6 42774730 to 42774733 3 - TSS region transcription start site region 60677
Gm22363 6 42775573 to 42775680 107 - snRNA gene predicted gene, 22363
D6Nds4 6 42782473 to 42782562 89 DNA segment DNA segment, Chr 6, Nuffield Department of Surgery 4
Olfr452 6 42790041 to 42790994 953 + protein coding gene olfactory receptor 452
Tssr56050 6 42800649 to 42800651 2 + TSS region transcription start site region 56050
Olfr451-ps1 6 42800743 to 42801675 932 + polymorphic pseudogene olfactory receptor 451, pseudogene 1
Olfr450 6 42817473 to 42818405 932 + protein coding gene olfactory receptor 450
Gm23982 6 42832779 to 42832884 105 + snRNA gene predicted gene, 23982
Olfr449 6 42834384 to 42838882 4498 + protein coding gene olfactory receptor 449
Olfr448 6 42896453 to 42897385 932 + protein coding gene olfactory receptor 448
Olfr447 6 42911525 to 42912457 932 + protein coding gene olfactory receptor 447
Olfr446 6 42927233 to 42928159 926 + protein coding gene olfactory receptor 446
Olrf445-ps1 6 42934594 to 42934907 313 + pseudogene olfactory receptor 445, pseudogene 1
Olfr444 6 42955500 to 42956432 932 + protein coding gene olfactory receptor 444
Tssr56051 6 42980665 to 42980666 1 + TSS region transcription start site region 56051
Gm17472 6 42980690 to 42981150 460 + gene segment predicted gene, 17472
Gm34905 6 43014502 to 43066903 52401 - lncRNA gene predicted gene, 34905
Tssr56052 6 43067287 to 43067314 27 + TSS region transcription start site region 56052
Gm38799 6 43067459 to 43090458 22999 + lncRNA gene predicted gene, 38799
Tssr60678 6 43076982 to 43076983 1 - TSS region transcription start site region 60678
Gm20730 6 43081518 to 43082097 579 - gene segment predicted gene, 20730
Olfr443-ps1 6 43094435 to 43095346 911 + pseudogene olfactory receptor 443, pseudogene 1
Olfr442-ps1 6 43099400 to 43099715 315 + pseudogene olfactory receptor 442, pseudogene 1
Olfr441 6 43115744 to 43116676 932 + protein coding gene olfactory receptor 441
Olfr440-ps1 6 43122354 to 43123263 909 + pseudogene olfactory receptor 440, pseudogene 1
Olfr439-ps1 6 43138133 to 43138439 306 + pseudogene olfactory receptor 439, pseudogene 1
Olfr237-ps1 6 43153307 to 43154239 932 + protein coding gene olfactory receptor 237, pseudogene 1
1700024N05Rik 6 43162454 to 43174858 12404 - lncRNA gene RIKEN cDNA 1700024N05 gene
Olfr437 6 43167060 to 43167992 932 + protein coding gene olfactory receptor 437
Olfr13 6 43173988 to 43174920 932 + protein coding gene olfactory receptor 13
Olfr436-ps1 6 43187171 to 43187696 525 + pseudogene olfactory receptor 436, pseudogene 1
Olfr435 6 43201646 to 43202587 941 + protein coding gene olfactory receptor 435
Gm21827 6 43210333 to 43210755 422 + pseudogene predicted gene, 21827
Olfr434 6 43216915 to 43217880 965 + protein coding gene olfactory receptor 434
Olfr47 6 43235610 to 43236575 965 + protein coding gene olfactory receptor 47
Gm44731 6 43264542 to 43265855 1313 - antisense lncRNA gene predicted gene 44731
Cpgi17342 6 43265260 to 43265888 628 CpG island CpG island 17342
Tssr56053 6 43265616 to 43265681 65 + TSS region transcription start site region 56053
Arhgef5 6 43265644 to 43289320 23676 + protein coding gene Rho guanine nucleotide exchange factor (GEF) 5
Tssr56054 6 43265684 to 43265712 28 + TSS region transcription start site region 56054
Tssr60679 6 43266596 to 43266610 14 - TSS region transcription start site region 60679
Gm44253 6 43277755 to 43278382 627 + unclassified gene predicted gene, 44253
Nobox 6 43303674 to 43309554 5880 - protein coding gene NOBOX oogenesis homeobox
Cpgi17343 6 43309502 to 43309664 162 CpG island CpG island 17343
Tpk1 6 43345001 to 43666278 321277 - protein coding gene thiamine pyrophosphokinase
Gm15550 6 43373805 to 43375549 1744 + pseudogene predicted gene 15550
Gm35113 6 43376094 to 43392531 16437 + lncRNA gene predicted gene, 35113
Tssr56055 6 43382466 to 43382552 86 + TSS region transcription start site region 56055
Gm38800 6 43415942 to 43418667 2725 + lncRNA gene predicted gene, 38800
Tssr56056 6 43462555 to 43462557 2 + TSS region transcription start site region 56056
9430018G01Rik 6 43467979 to 43474318 6339 + antisense lncRNA gene RIKEN cDNA 9430018G01 gene
Tssr56057 6 43598214 to 43598220 6 + TSS region transcription start site region 56057
D6Mit350 6 43624574 to 43624746 172 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 350
Cpgi17344 6 43665619 to 43666479 860 CpG island CpG island 17344
Tssr60680 6 43666134 to 43666145 11 - TSS region transcription start site region 60680
Tssr60681 6 43666158 to 43666224 66 - TSS region transcription start site region 60681
Gm46984 6 43678806 to 43679721 915 - lncRNA gene predicted gene, 46984
Tssr60682 6 43678977 to 43678978 1 - TSS region transcription start site region 60682
Tssr1827 6 43680402 to 43680404 2 + TSS region transcription start site region 1827
D6Mit76 6 43728877 to 43728991 114 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 76
Gm5990 6 43766565 to 43767310 745 - pseudogene predicted gene 5990
Ogrq3 6 43826813 to 77811523 33984710 QTL overall growth rate QTL 3
Pwgrq16 6 43826813 to 77811523 33984710 QTL post-weaning growth rate QTL 16
Pwbwq12 6 43826813 to 77811523 33984710 QTL post-weaning body weight QTL 12
Pwbwq11 6 43826813 to 77811523 33984710 QTL post-weaning body weight QTL 11
Pwbwq10 6 43826813 to 77811523 33984710 QTL post-weaning body weight QTL 10
Pwgrq5 6 43826813 to 77811523 33984710 QTL pre-weaning growth rate QTL 5
Gm35163 6 43839255 to 43852378 13123 + lncRNA gene predicted gene, 35163
Gm7783 6 43856124 to 43856904 780 - pseudogene predicted gene 7783