Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:42229516-42810313

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179 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi17334 6 42245839 to 42246205 366 CpG island CpG island 17334
Tssr55997 6 42245895 to 42245903 8 + TSS region transcription start site region 55997
Tssr55998 6 42245907 to 42245977 70 + TSS region transcription start site region 55998
Gstk1 6 42245935 to 42250441 4506 + protein coding gene glutathione S-transferase kappa 1
Tssr55999 6 42245982 to 42246013 31 + TSS region transcription start site region 55999
Tssr56000 6 42247408 to 42247471 63 + TSS region transcription start site region 56000
D6Mit271 6 42248461 to 42248576 115 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 271
Tssr56001 6 42249352 to 42249371 19 + TSS region transcription start site region 56001
Tssr56002 6 42249839 to 42249848 9 + TSS region transcription start site region 56002
Tssr56003 6 42261957 to 42262007 50 + TSS region transcription start site region 56003
Tmem139 6 42261970 to 42264555 2585 + protein coding gene transmembrane protein 139
Cpgi17335 6 42264595 to 42265488 893 CpG island CpG island 17335
Tssr56004 6 42264983 to 42265032 49 + TSS region transcription start site region 56004
Casp2 6 42264985 to 42282508 17523 + protein coding gene caspase 2
Tssr56005 6 42265041 to 42265124 83 + TSS region transcription start site region 56005
Gm25108 6 42275650 to 42275727 77 + snoRNA gene predicted gene, 25108
Tssr56006 6 42280845 to 42280848 3 + TSS region transcription start site region 56006
Tssr56007 6 42282215 to 42282218 3 + TSS region transcription start site region 56007
Tssr56008 6 42286660 to 42286671 11 + TSS region transcription start site region 56008
Tssr56009 6 42286676 to 42286687 11 + TSS region transcription start site region 56009
Clcn1 6 42286685 to 42315756 29071 + protein coding gene chloride channel, voltage-sensitive 1
Tssr56010 6 42286709 to 42286718 9 + TSS region transcription start site region 56010
Gm38797 6 42310146 to 42313025 2879 - lncRNA gene predicted gene, 38797
Fam131b 6 42315312 to 42324643 9331 - protein coding gene family with sequence similarity 131, member B
Tssr60603 6 42323328 to 42323339 11 - TSS region transcription start site region 60603
Tssr60604 6 42323349 to 42323370 21 - TSS region transcription start site region 60604
Cpgi17336 6 42323664 to 42325239 1575 CpG island CpG island 17336
Tssr60605 6 42324554 to 42324599 45 - TSS region transcription start site region 60605
Tssr60606 6 42324648 to 42324671 23 - TSS region transcription start site region 60606
Gm44284 6 42328713 to 42350862 22149 - antisense lncRNA gene predicted gene, 44284
Gm24611 6 42337677 to 42337783 106 - snRNA gene predicted gene, 24611
Tssr60607 6 42340232 to 42340239 7 - TSS region transcription start site region 60607
Cpgi17337 6 42349476 to 42350791 1315 CpG island CpG island 17337
Tssr56011 6 42349594 to 42349629 35 + TSS region transcription start site region 56011
Zyx 6 42349630 to 42360213 10583 + protein coding gene zyxin
Tssr56012 6 42349665 to 42349681 16 + TSS region transcription start site region 56012
Tssr60608 6 42349671 to 42349680 9 - TSS region transcription start site region 60608
Tssr60609 6 42349692 to 42349717 25 - TSS region transcription start site region 60609
Tssr56013 6 42349791 to 42349800 9 + TSS region transcription start site region 56013
Tssr56014 6 42349826 to 42349837 11 + TSS region transcription start site region 56014
Tssr56015 6 42350000 to 42350076 76 + TSS region transcription start site region 56015
Tssr56016 6 42350082 to 42350091 9 + TSS region transcription start site region 56016
Tssr56017 6 42350099 to 42350110 11 + TSS region transcription start site region 56017
Tssr56018 6 42350247 to 42350356 109 + TSS region transcription start site region 56018
Tssr60610 6 42350447 to 42350476 29 - TSS region transcription start site region 60610
Tssr56019 6 42350621 to 42350634 13 + TSS region transcription start site region 56019
Tssr56020 6 42350710 to 42350754 44 + TSS region transcription start site region 56020
Tssr56021 6 42350778 to 42350790 12 + TSS region transcription start site region 56021
Tssr56022 6 42350937 to 42350956 19 + TSS region transcription start site region 56022
Tssr56023 6 42350978 to 42350987 9 + TSS region transcription start site region 56023
Tssr56024 6 42351005 to 42351018 13 + TSS region transcription start site region 56024
Tssr56025 6 42351040 to 42351061 21 + TSS region transcription start site region 56025
Tssr56026 6 42351068 to 42351082 14 + TSS region transcription start site region 56026
Tssr56027 6 42351105 to 42351127 22 + TSS region transcription start site region 56027
Tssr56028 6 42351150 to 42351164 14 + TSS region transcription start site region 56028
Tssr56029 6 42351270 to 42351290 20 + TSS region transcription start site region 56029
Tssr60611 6 42351291 to 42351300 9 - TSS region transcription start site region 60611
Tssr56030 6 42351296 to 42351311 15 + TSS region transcription start site region 56030
Tssr60612 6 42351305 to 42351322 17 - TSS region transcription start site region 60612
Tssr56031 6 42351323 to 42351334 11 + TSS region transcription start site region 56031
Tssr60613 6 42351332 to 42351362 30 - TSS region transcription start site region 60613
Tssr56032 6 42351475 to 42351501 26 + TSS region transcription start site region 56032
Tssr60614 6 42351527 to 42351566 39 - TSS region transcription start site region 60614
Tssr56033 6 42351542 to 42351557 15 + TSS region transcription start site region 56033
Tssr56034 6 42351566 to 42351589 23 + TSS region transcription start site region 56034
Tssr60615 6 42351593 to 42351653 60 - TSS region transcription start site region 60615
Tssr56035 6 42351698 to 42351707 9 + TSS region transcription start site region 56035
Tssr56036 6 42351750 to 42351759 9 + TSS region transcription start site region 56036
Tssr56037 6 42351856 to 42351885 29 + TSS region transcription start site region 56037
Tssr60616 6 42353316 to 42353328 12 - TSS region transcription start site region 60616
Tssr56038 6 42353474 to 42353482 8 + TSS region transcription start site region 56038
Tssr56039 6 42353527 to 42353532 5 + TSS region transcription start site region 56039
Tssr56040 6 42355953 to 42355976 23 + TSS region transcription start site region 56040
Tssr56041 6 42357321 to 42357336 15 + TSS region transcription start site region 56041
Tssr56042 6 42358281 to 42358299 18 + TSS region transcription start site region 56042
Tssr56043 6 42358304 to 42358320 16 + TSS region transcription start site region 56043
Tssr60617 6 42358391 to 42358393 2 - TSS region transcription start site region 60617
Epha1 6 42358487 to 42373268 14781 - protein coding gene Eph receptor A1
2010310C07Rik 6 42370671 to 42380558 9887 + antisense lncRNA gene RIKEN cDNA 2010310C07 gene
Cpgi17338 6 42372858 to 42373284 426 CpG island CpG island 17338
Tssr60618 6 42373238 to 42373253 15 - TSS region transcription start site region 60618
Tssr60619 6 42373254 to 42373274 20 - TSS region transcription start site region 60619
Tssr56044 6 42397325 to 42397335 10 + TSS region transcription start site region 56044
Tssr1823 6 42397363 to 42397368 5 + TSS region transcription start site region 1823
Tas2r143 6 42400238 to 42401119 881 + protein coding gene taste receptor, type 2, member 143
Tas2r135 6 42405529 to 42406494 965 + protein coding gene taste receptor, type 2, member 135
Tssr56045 6 42416986 to 42416989 3 + TSS region transcription start site region 56045
Tas2r126 6 42434535 to 42435461 926 + protein coding gene taste receptor, type 2, member 126
Gm44470 6 42443790 to 42443931 141 - pseudogene predicted gene, 44470
Gm34818 6 42445242 to 42445912 670 - pseudogene predicted gene, 34818
Olfr458 6 42460076 to 42461017 941 - protein coding gene olfactory receptor 458
Olfr457 6 42471235 to 42472176 941 - protein coding gene olfactory receptor 457
Olfr456 6 42486163 to 42487214 1051 - protein coding gene olfactory receptor 456
Gm34752 6 42509630 to 42521467 11837 + lncRNA gene predicted gene, 34752
Gm4877 6 42519516 to 42520313 797 - pseudogene predicted gene 4877
Olfr455 6 42538067 to 42539020 953 - protein coding gene olfactory receptor 455
Cpgi17339 6 42538447 to 42538632 185 CpG island CpG island 17339
Gm38798 6 42578231 to 42581779 3548 - lncRNA gene predicted gene, 38798
Tssr56046 6 42585217 to 42585226 9 + TSS region transcription start site region 56046
Tssr56047 6 42585350 to 42585375 25 + TSS region transcription start site region 56047
Tssr60620 6 42585740 to 42585753 13 - TSS region transcription start site region 60620
Tssr60621 6 42585758 to 42585773 15 - TSS region transcription start site region 60621
Tssr60622 6 42585804 to 42585832 28 - TSS region transcription start site region 60622
Tssr60623 6 42585860 to 42585881 21 - TSS region transcription start site region 60623
Tssr60624 6 42585902 to 42585908 6 - TSS region transcription start site region 60624
Tssr56048 6 42585960 to 42585971 11 + TSS region transcription start site region 56048
Tssr60625 6 42585970 to 42585981 11 - TSS region transcription start site region 60625
Tssr60626 6 42585985 to 42585997 12 - TSS region transcription start site region 60626
Tssr60627 6 42586001 to 42586006 5 - TSS region transcription start site region 60627
Tssr56049 6 42586010 to 42586045 35 + TSS region transcription start site region 56049
Tssr60628 6 42586145 to 42586172 27 - TSS region transcription start site region 60628
Tssr60629 6 42586200 to 42586212 12 - TSS region transcription start site region 60629
Tssr60630 6 42586269 to 42586280 11 - TSS region transcription start site region 60630
Tssr60631 6 42586313 to 42586322 9 - TSS region transcription start site region 60631
Tssr60632 6 42586365 to 42586368 3 - TSS region transcription start site region 60632
Tssr60633 6 42586391 to 42586398 7 - TSS region transcription start site region 60633
Tssr60634 6 42586404 to 42586407 3 - TSS region transcription start site region 60634
Tssr60635 6 42586470 to 42586479 9 - TSS region transcription start site region 60635
Tssr60636 6 42586575 to 42586578 3 - TSS region transcription start site region 60636
Tssr60637 6 42586831 to 42586842 11 - TSS region transcription start site region 60637
Tssr60638 6 42586871 to 42586885 14 - TSS region transcription start site region 60638
Tssr60639 6 42586922 to 42586937 15 - TSS region transcription start site region 60639
Tssr60640 6 42587177 to 42587183 6 - TSS region transcription start site region 60640
Tcaf3 6 42587213 to 42597372 10159 - protein coding gene TRPM8 channel-associated factor 3
Tssr60641 6 42589788 to 42589798 10 - TSS region transcription start site region 60641
Tssr60642 6 42589867 to 42589871 4 - TSS region transcription start site region 60642
Tssr60643 6 42590848 to 42590853 5 - TSS region transcription start site region 60643
Tssr60644 6 42591035 to 42591045 10 - TSS region transcription start site region 60644
Tssr60645 6 42591897 to 42591907 10 - TSS region transcription start site region 60645
Tssr60646 6 42591928 to 42591933 5 - TSS region transcription start site region 60646
Tssr60647 6 42592356 to 42592362 6 - TSS region transcription start site region 60647
Tssr60648 6 42593276 to 42593293 17 - TSS region transcription start site region 60648
Tssr1824 6 42593338 to 42593341 3 - TSS region transcription start site region 1824
Tssr60649 6 42593451 to 42593456 5 - TSS region transcription start site region 60649
Tssr60650 6 42593523 to 42593534 11 - TSS region transcription start site region 60650
Tssr60651 6 42593997 to 42594004 7 - TSS region transcription start site region 60651
Tssr60652 6 42594113 to 42594124 11 - TSS region transcription start site region 60652
Tssr60653 6 42597301 to 42597315 14 - TSS region transcription start site region 60653
Tssr60654 6 42597376 to 42597384 8 - TSS region transcription start site region 60654
Tssr60655 6 42597390 to 42597397 7 - TSS region transcription start site region 60655
Tssr60656 6 42597402 to 42597412 10 - TSS region transcription start site region 60656
Tssr1825 6 42597456 to 42597461 5 - TSS region transcription start site region 1825
Tssr1826 6 42597494 to 42597503 9 - TSS region transcription start site region 1826
Tssr60657 6 42597548 to 42597559 11 - TSS region transcription start site region 60657
Tssr60658 6 42597568 to 42597581 13 - TSS region transcription start site region 60658
Tssr60659 6 42597628 to 42597649 21 - TSS region transcription start site region 60659
Tssr60660 6 42597662 to 42597679 17 - TSS region transcription start site region 60660
Tssr60661 6 42597686 to 42597702 16 - TSS region transcription start site region 60661
Tssr60662 6 42597712 to 42597720 8 - TSS region transcription start site region 60662
Tssr60663 6 42597831 to 42597838 7 - TSS region transcription start site region 60663
Tssr60664 6 42598120 to 42598137 17 - TSS region transcription start site region 60664
Tssr60665 6 42598967 to 42598970 3 - TSS region transcription start site region 60665
Tssr60666 6 42601616 to 42601623 7 - TSS region transcription start site region 60666
Tssr60667 6 42601848 to 42601863 15 - TSS region transcription start site region 60667
Tcaf2 6 42623043 to 42645041 21998 - protein coding gene TRPM8 channel-associated factor 2
Tssr60668 6 42644920 to 42644924 4 - TSS region transcription start site region 60668
Tssr60669 6 42645028 to 42645073 45 - TSS region transcription start site region 60669
Tssr60670 6 42645079 to 42645097 18 - TSS region transcription start site region 60670
Tcaf1 6 42668002 to 42710088 42086 - protein coding gene TRPM8 channel-associated factor 1
Tssr60671 6 42669858 to 42669872 14 - TSS region transcription start site region 60671
Cpgi17340 6 42692482 to 42693164 682 CpG island CpG island 17340
Tssr60672 6 42693030 to 42693070 40 - TSS region transcription start site region 60672
Tssr60673 6 42693071 to 42693082 11 - TSS region transcription start site region 60673
Tssr60674 6 42693091 to 42693100 9 - TSS region transcription start site region 60674
Cpgi17341 6 42709766 to 42710164 398 CpG island CpG island 17341
Tssr60675 6 42710001 to 42710015 14 - TSS region transcription start site region 60675
Tssr60676 6 42710036 to 42710120 84 - TSS region transcription start site region 60676
Olfr454-ps1 6 42721916 to 42722263 347 + pseudogene olfactory receptor 454, pseudogene 1
Gm44030 6 42725591 to 42726022 431 + pseudogene predicted gene, 44030
Gm44032 6 42733934 to 42734099 165 - pseudogene predicted gene, 44032
Olfr453 6 42744039 to 42744992 953 + protein coding gene olfactory receptor 453
Gm44034 6 42745187 to 42745250 63 + pseudogene predicted gene, 44034
Olfr38 6 42762054 to 42763007 953 + protein coding gene olfactory receptor 38
Tssr60677 6 42774730 to 42774733 3 - TSS region transcription start site region 60677
Gm22363 6 42775573 to 42775680 107 - snRNA gene predicted gene, 22363
D6Nds4 6 42782473 to 42782562 89 DNA segment DNA segment, Chr 6, Nuffield Department of Surgery 4
Olfr452 6 42790041 to 42790994 953 + protein coding gene olfactory receptor 452
Tssr56050 6 42800649 to 42800651 2 + TSS region transcription start site region 56050
Olfr451-ps1 6 42800743 to 42801675 932 + polymorphic pseudogene olfactory receptor 451, pseudogene 1