Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:41875328-42556287

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112 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr55991 6 41951625 to 41951629 4 + TSS region transcription start site region 55991
Sval1 6 41951630 to 41956098 4468 + protein coding gene seminal vesicle antigen-like 1
Sval3 6 41968140 to 41973090 4950 + protein coding gene seminal vesicle antigen-like 3
AU046084 6 42032400 to 42033085 685 unclassified gene expressed sequence AU046084
Tssr55992 6 42038374 to 42038400 26 + TSS region transcription start site region 55992
Sva 6 42038394 to 42042851 4457 + protein coding gene seminal vesicle antigen
Tssr55993 6 42038454 to 42038470 16 + TSS region transcription start site region 55993
Tssr55994 6 42040066 to 42040084 18 + TSS region transcription start site region 55994
Tssr55995 6 42040087 to 42040098 11 + TSS region transcription start site region 55995
Tssr60601 6 42040142 to 42040153 11 - TSS region transcription start site region 60601
Tssr60602 6 42040179 to 42040189 10 - TSS region transcription start site region 60602
Tssr55996 6 42077928 to 42077929 1 + TSS region transcription start site region 55996
Gm34701 6 42105700 to 42106548 848 - lncRNA gene predicted gene, 34701
Tas2r139 6 42140936 to 42141895 959 + protein coding gene taste receptor, type 2, member 139
Tas2r144 6 42215328 to 42216287 959 + protein coding gene taste receptor, type 2, member 144
Cpgi17334 6 42245839 to 42246205 366 CpG island CpG island 17334
Tssr55997 6 42245895 to 42245903 8 + TSS region transcription start site region 55997
Tssr55998 6 42245907 to 42245977 70 + TSS region transcription start site region 55998
Gstk1 6 42245935 to 42250441 4506 + protein coding gene glutathione S-transferase kappa 1
Tssr55999 6 42245982 to 42246013 31 + TSS region transcription start site region 55999
Tssr56000 6 42247408 to 42247471 63 + TSS region transcription start site region 56000
D6Mit271 6 42248461 to 42248576 115 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 271
Tssr56001 6 42249352 to 42249371 19 + TSS region transcription start site region 56001
Tssr56002 6 42249839 to 42249848 9 + TSS region transcription start site region 56002
Tssr56003 6 42261957 to 42262007 50 + TSS region transcription start site region 56003
Tmem139 6 42261970 to 42264555 2585 + protein coding gene transmembrane protein 139
Cpgi17335 6 42264595 to 42265488 893 CpG island CpG island 17335
Tssr56004 6 42264983 to 42265032 49 + TSS region transcription start site region 56004
Casp2 6 42264985 to 42282508 17523 + protein coding gene caspase 2
Tssr56005 6 42265041 to 42265124 83 + TSS region transcription start site region 56005
Gm25108 6 42275650 to 42275727 77 + snoRNA gene predicted gene, 25108
Tssr56006 6 42280845 to 42280848 3 + TSS region transcription start site region 56006
Tssr56007 6 42282215 to 42282218 3 + TSS region transcription start site region 56007
Tssr56008 6 42286660 to 42286671 11 + TSS region transcription start site region 56008
Tssr56009 6 42286676 to 42286687 11 + TSS region transcription start site region 56009
Clcn1 6 42286685 to 42315756 29071 + protein coding gene chloride channel, voltage-sensitive 1
Tssr56010 6 42286709 to 42286718 9 + TSS region transcription start site region 56010
Gm38797 6 42310146 to 42313025 2879 - lncRNA gene predicted gene, 38797
Fam131b 6 42315312 to 42324643 9331 - protein coding gene family with sequence similarity 131, member B
Tssr60603 6 42323328 to 42323339 11 - TSS region transcription start site region 60603
Tssr60604 6 42323349 to 42323370 21 - TSS region transcription start site region 60604
Cpgi17336 6 42323664 to 42325239 1575 CpG island CpG island 17336
Tssr60605 6 42324554 to 42324599 45 - TSS region transcription start site region 60605
Tssr60606 6 42324648 to 42324671 23 - TSS region transcription start site region 60606
Gm44284 6 42328713 to 42350862 22149 - antisense lncRNA gene predicted gene, 44284
Gm24611 6 42337677 to 42337783 106 - snRNA gene predicted gene, 24611
Tssr60607 6 42340232 to 42340239 7 - TSS region transcription start site region 60607
Cpgi17337 6 42349476 to 42350791 1315 CpG island CpG island 17337
Tssr56011 6 42349594 to 42349629 35 + TSS region transcription start site region 56011
Zyx 6 42349630 to 42360213 10583 + protein coding gene zyxin
Tssr56012 6 42349665 to 42349681 16 + TSS region transcription start site region 56012
Tssr60608 6 42349671 to 42349680 9 - TSS region transcription start site region 60608
Tssr60609 6 42349692 to 42349717 25 - TSS region transcription start site region 60609
Tssr56013 6 42349791 to 42349800 9 + TSS region transcription start site region 56013
Tssr56014 6 42349826 to 42349837 11 + TSS region transcription start site region 56014
Tssr56015 6 42350000 to 42350076 76 + TSS region transcription start site region 56015
Tssr56016 6 42350082 to 42350091 9 + TSS region transcription start site region 56016
Tssr56017 6 42350099 to 42350110 11 + TSS region transcription start site region 56017
Tssr56018 6 42350247 to 42350356 109 + TSS region transcription start site region 56018
Tssr60610 6 42350447 to 42350476 29 - TSS region transcription start site region 60610
Tssr56019 6 42350621 to 42350634 13 + TSS region transcription start site region 56019
Tssr56020 6 42350710 to 42350754 44 + TSS region transcription start site region 56020
Tssr56021 6 42350778 to 42350790 12 + TSS region transcription start site region 56021
Tssr56022 6 42350937 to 42350956 19 + TSS region transcription start site region 56022
Tssr56023 6 42350978 to 42350987 9 + TSS region transcription start site region 56023
Tssr56024 6 42351005 to 42351018 13 + TSS region transcription start site region 56024
Tssr56025 6 42351040 to 42351061 21 + TSS region transcription start site region 56025
Tssr56026 6 42351068 to 42351082 14 + TSS region transcription start site region 56026
Tssr56027 6 42351105 to 42351127 22 + TSS region transcription start site region 56027
Tssr56028 6 42351150 to 42351164 14 + TSS region transcription start site region 56028
Tssr56029 6 42351270 to 42351290 20 + TSS region transcription start site region 56029
Tssr60611 6 42351291 to 42351300 9 - TSS region transcription start site region 60611
Tssr56030 6 42351296 to 42351311 15 + TSS region transcription start site region 56030
Tssr60612 6 42351305 to 42351322 17 - TSS region transcription start site region 60612
Tssr56031 6 42351323 to 42351334 11 + TSS region transcription start site region 56031
Tssr60613 6 42351332 to 42351362 30 - TSS region transcription start site region 60613
Tssr56032 6 42351475 to 42351501 26 + TSS region transcription start site region 56032
Tssr60614 6 42351527 to 42351566 39 - TSS region transcription start site region 60614
Tssr56033 6 42351542 to 42351557 15 + TSS region transcription start site region 56033
Tssr56034 6 42351566 to 42351589 23 + TSS region transcription start site region 56034
Tssr60615 6 42351593 to 42351653 60 - TSS region transcription start site region 60615
Tssr56035 6 42351698 to 42351707 9 + TSS region transcription start site region 56035
Tssr56036 6 42351750 to 42351759 9 + TSS region transcription start site region 56036
Tssr56037 6 42351856 to 42351885 29 + TSS region transcription start site region 56037
Tssr60616 6 42353316 to 42353328 12 - TSS region transcription start site region 60616
Tssr56038 6 42353474 to 42353482 8 + TSS region transcription start site region 56038
Tssr56039 6 42353527 to 42353532 5 + TSS region transcription start site region 56039
Tssr56040 6 42355953 to 42355976 23 + TSS region transcription start site region 56040
Tssr56041 6 42357321 to 42357336 15 + TSS region transcription start site region 56041
Tssr56042 6 42358281 to 42358299 18 + TSS region transcription start site region 56042
Tssr56043 6 42358304 to 42358320 16 + TSS region transcription start site region 56043
Tssr60617 6 42358391 to 42358393 2 - TSS region transcription start site region 60617
Epha1 6 42358487 to 42373268 14781 - protein coding gene Eph receptor A1
2010310C07Rik 6 42370671 to 42380558 9887 + antisense lncRNA gene RIKEN cDNA 2010310C07 gene
Cpgi17338 6 42372858 to 42373284 426 CpG island CpG island 17338
Tssr60618 6 42373238 to 42373253 15 - TSS region transcription start site region 60618
Tssr60619 6 42373254 to 42373274 20 - TSS region transcription start site region 60619
Tssr56044 6 42397325 to 42397335 10 + TSS region transcription start site region 56044
Tssr1823 6 42397363 to 42397368 5 + TSS region transcription start site region 1823
Tas2r143 6 42400238 to 42401119 881 + protein coding gene taste receptor, type 2, member 143
Tas2r135 6 42405529 to 42406494 965 + protein coding gene taste receptor, type 2, member 135
Tssr56045 6 42416986 to 42416989 3 + TSS region transcription start site region 56045
Tas2r126 6 42434535 to 42435461 926 + protein coding gene taste receptor, type 2, member 126
Gm44470 6 42443790 to 42443931 141 - pseudogene predicted gene, 44470
Gm34818 6 42445242 to 42445912 670 - pseudogene predicted gene, 34818
Olfr458 6 42460076 to 42461017 941 - protein coding gene olfactory receptor 458
Olfr457 6 42471235 to 42472176 941 - protein coding gene olfactory receptor 457
Olfr456 6 42486163 to 42487214 1051 - protein coding gene olfactory receptor 456
Gm34752 6 42509630 to 42521467 11837 + lncRNA gene predicted gene, 34752
Gm4877 6 42519516 to 42520313 797 - pseudogene predicted gene 4877
Olfr455 6 42538067 to 42539020 953 - protein coding gene olfactory receptor 455
Cpgi17339 6 42538447 to 42538632 185 CpG island CpG island 17339