Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:41588140-42353090

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm38582 6 41558488 to 41603450 44962 + lncRNA gene predicted gene, 38582
Tssr55973 6 41590157 to 41590160 3 + TSS region transcription start site region 55973
D6Mit117 6 41598320 to 41598437 117 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 117
Gm27549 6 41602244 to 41602305 61 - snRNA gene predicted gene, 27549
Cpgi17333 6 41604607 to 41605921 1314 CpG island CpG island 17333
Tssr55974 6 41605024 to 41605033 9 + TSS region transcription start site region 55974
Tssr55975 6 41605148 to 41605175 27 + TSS region transcription start site region 55975
Ephb6 6 41605482 to 41620509 15027 + protein coding gene Eph receptor B6
Tssr55976 6 41605496 to 41605569 73 + TSS region transcription start site region 55976
Tssr55977 6 41605651 to 41605671 20 + TSS region transcription start site region 55977
Trpv6 6 41620624 to 41636405 15781 - protein coding gene transient receptor potential cation channel, subfamily V, member 6
Gm38795 6 41621779 to 41624061 2282 + lncRNA gene predicted gene, 38795
Tssr60584 6 41636310 to 41636313 3 - TSS region transcription start site region 60584
Tssr60585 6 41636337 to 41636365 28 - TSS region transcription start site region 60585
Tssr60586 6 41636372 to 41636384 12 - TSS region transcription start site region 60586
Tssr60587 6 41636389 to 41636409 20 - TSS region transcription start site region 60587
Tssr55978 6 41641718 to 41641733 15 + TSS region transcription start site region 55978
Gm34642 6 41641730 to 41658800 17070 + lncRNA gene predicted gene, 34642
Tssr55979 6 41641735 to 41641753 18 + TSS region transcription start site region 55979
Trpv5 6 41652173 to 41680769 28596 - protein coding gene transient receptor potential cation channel, subfamily V, member 5
Tssr60588 6 41680730 to 41680743 13 - TSS region transcription start site region 60588
Tssr60589 6 41680785 to 41680796 11 - TSS region transcription start site region 60589
Tssr60590 6 41680808 to 41680818 10 - TSS region transcription start site region 60590
Tssr60591 6 41680834 to 41680844 10 - TSS region transcription start site region 60591
Tssr55980 6 41684353 to 41684358 5 + TSS region transcription start site region 55980
Tssr55981 6 41684363 to 41684368 5 + TSS region transcription start site region 55981
Tssr55982 6 41684378 to 41684402 24 + TSS region transcription start site region 55982
Tssr55983 6 41684414 to 41684441 27 + TSS region transcription start site region 55983
Llcfc1 6 41684431 to 41685717 1286 + protein coding gene LLLL and CFNLAS motif containing 1
Tssr55984 6 41684447 to 41684454 7 + TSS region transcription start site region 55984
Kel 6 41686329 to 41704334 18005 - protein coding gene Kell blood group
Tssr60592 6 41687517 to 41687523 6 - TSS region transcription start site region 60592
Tssr60593 6 41687556 to 41687584 28 - TSS region transcription start site region 60593
Gm37527 6 41692640 to 41696186 3546 - unclassified gene predicted gene, 37527
Tssr60594 6 41693300 to 41693304 4 - TSS region transcription start site region 60594
Tssr60595 6 41699929 to 41699930 1 - TSS region transcription start site region 60595
Tssr60596 6 41700726 to 41700729 3 - TSS region transcription start site region 60596
Tssr60597 6 41701909 to 41701913 4 - TSS region transcription start site region 60597
Tssr60598 6 41703084 to 41703098 14 - TSS region transcription start site region 60598
Tssr60599 6 41704263 to 41704323 60 - TSS region transcription start site region 60599
Tssr60600 6 41704340 to 41704351 11 - TSS region transcription start site region 60600
Gm38796 6 41706187 to 41710140 3953 + lncRNA gene predicted gene, 38796
Olfr459 6 41771353 to 41772297 944 - protein coding gene olfactory receptor 459
Tssr55985 6 41847543 to 41847557 14 + TSS region transcription start site region 55985
Pip 6 41847549 to 41852062 4513 + protein coding gene prolactin induced protein
Tssr55986 6 41851865 to 41851868 3 + TSS region transcription start site region 55986
Tssr55987 6 41852748 to 41852790 42 + TSS region transcription start site region 55987
Tssr55988 6 41852842 to 41852855 13 + TSS region transcription start site region 55988
Tssr55989 6 41852865 to 41852872 7 + TSS region transcription start site region 55989
Tssr55990 6 41860305 to 41860308 3 + TSS region transcription start site region 55990
Sval2 6 41860339 to 41864322 3983 + protein coding gene seminal vesicle antigen-like 2
Tssr55991 6 41951625 to 41951629 4 + TSS region transcription start site region 55991
Sval1 6 41951630 to 41956098 4468 + protein coding gene seminal vesicle antigen-like 1
Sval3 6 41968140 to 41973090 4950 + protein coding gene seminal vesicle antigen-like 3
AU046084 6 42032400 to 42033085 685 unclassified gene expressed sequence AU046084
Tssr55992 6 42038374 to 42038400 26 + TSS region transcription start site region 55992
Sva 6 42038394 to 42042851 4457 + protein coding gene seminal vesicle antigen
Tssr55993 6 42038454 to 42038470 16 + TSS region transcription start site region 55993
Tssr55994 6 42040066 to 42040084 18 + TSS region transcription start site region 55994
Tssr55995 6 42040087 to 42040098 11 + TSS region transcription start site region 55995
Tssr60601 6 42040142 to 42040153 11 - TSS region transcription start site region 60601
Tssr60602 6 42040179 to 42040189 10 - TSS region transcription start site region 60602
Tssr55996 6 42077928 to 42077929 1 + TSS region transcription start site region 55996
Gm34701 6 42105700 to 42106548 848 - lncRNA gene predicted gene, 34701
Tas2r139 6 42140936 to 42141895 959 + protein coding gene taste receptor, type 2, member 139
Tas2r144 6 42215328 to 42216287 959 + protein coding gene taste receptor, type 2, member 144
Cpgi17334 6 42245839 to 42246205 366 CpG island CpG island 17334
Tssr55997 6 42245895 to 42245903 8 + TSS region transcription start site region 55997
Tssr55998 6 42245907 to 42245977 70 + TSS region transcription start site region 55998
Gstk1 6 42245935 to 42250441 4506 + protein coding gene glutathione S-transferase kappa 1
Tssr55999 6 42245982 to 42246013 31 + TSS region transcription start site region 55999
Tssr56000 6 42247408 to 42247471 63 + TSS region transcription start site region 56000
D6Mit271 6 42248461 to 42248576 115 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 271
Tssr56001 6 42249352 to 42249371 19 + TSS region transcription start site region 56001
Tssr56002 6 42249839 to 42249848 9 + TSS region transcription start site region 56002
Tssr56003 6 42261957 to 42262007 50 + TSS region transcription start site region 56003
Tmem139 6 42261970 to 42264555 2585 + protein coding gene transmembrane protein 139
Cpgi17335 6 42264595 to 42265488 893 CpG island CpG island 17335
Tssr56004 6 42264983 to 42265032 49 + TSS region transcription start site region 56004
Casp2 6 42264985 to 42282508 17523 + protein coding gene caspase 2
Tssr56005 6 42265041 to 42265124 83 + TSS region transcription start site region 56005
Gm25108 6 42275650 to 42275727 77 + snoRNA gene predicted gene, 25108
Tssr56006 6 42280845 to 42280848 3 + TSS region transcription start site region 56006
Tssr56007 6 42282215 to 42282218 3 + TSS region transcription start site region 56007
Tssr56008 6 42286660 to 42286671 11 + TSS region transcription start site region 56008
Tssr56009 6 42286676 to 42286687 11 + TSS region transcription start site region 56009
Clcn1 6 42286685 to 42315756 29071 + protein coding gene chloride channel, voltage-sensitive 1
Tssr56010 6 42286709 to 42286718 9 + TSS region transcription start site region 56010
Gm38797 6 42310146 to 42313025 2879 - lncRNA gene predicted gene, 38797
Fam131b 6 42315312 to 42324643 9331 - protein coding gene family with sequence similarity 131, member B
Tssr60603 6 42323328 to 42323339 11 - TSS region transcription start site region 60603
Tssr60604 6 42323349 to 42323370 21 - TSS region transcription start site region 60604
Cpgi17336 6 42323664 to 42325239 1575 CpG island CpG island 17336
Tssr60605 6 42324554 to 42324599 45 - TSS region transcription start site region 60605
Tssr60606 6 42324648 to 42324671 23 - TSS region transcription start site region 60606
Gm44284 6 42328713 to 42350862 22149 - antisense lncRNA gene predicted gene, 44284
Gm24611 6 42337677 to 42337783 106 - snRNA gene predicted gene, 24611
Tssr60607 6 42340232 to 42340239 7 - TSS region transcription start site region 60607
Cpgi17337 6 42349476 to 42350791 1315 CpG island CpG island 17337
Tssr56011 6 42349594 to 42349629 35 + TSS region transcription start site region 56011
Zyx 6 42349630 to 42360213 10583 + protein coding gene zyxin
Tssr56012 6 42349665 to 42349681 16 + TSS region transcription start site region 56012
Tssr60608 6 42349671 to 42349680 9 - TSS region transcription start site region 60608
Tssr60609 6 42349692 to 42349717 25 - TSS region transcription start site region 60609
Tssr56013 6 42349791 to 42349800 9 + TSS region transcription start site region 56013
Tssr56014 6 42349826 to 42349837 11 + TSS region transcription start site region 56014
Tssr56015 6 42350000 to 42350076 76 + TSS region transcription start site region 56015
Tssr56016 6 42350082 to 42350091 9 + TSS region transcription start site region 56016
Tssr56017 6 42350099 to 42350110 11 + TSS region transcription start site region 56017
Tssr56018 6 42350247 to 42350356 109 + TSS region transcription start site region 56018
Tssr60610 6 42350447 to 42350476 29 - TSS region transcription start site region 60610
Tssr56019 6 42350621 to 42350634 13 + TSS region transcription start site region 56019
Tssr56020 6 42350710 to 42350754 44 + TSS region transcription start site region 56020
Tssr56021 6 42350778 to 42350790 12 + TSS region transcription start site region 56021
Tssr56022 6 42350937 to 42350956 19 + TSS region transcription start site region 56022
Tssr56023 6 42350978 to 42350987 9 + TSS region transcription start site region 56023
Tssr56024 6 42351005 to 42351018 13 + TSS region transcription start site region 56024
Tssr56025 6 42351040 to 42351061 21 + TSS region transcription start site region 56025
Tssr56026 6 42351068 to 42351082 14 + TSS region transcription start site region 56026
Tssr56027 6 42351105 to 42351127 22 + TSS region transcription start site region 56027
Tssr56028 6 42351150 to 42351164 14 + TSS region transcription start site region 56028
Tssr56029 6 42351270 to 42351290 20 + TSS region transcription start site region 56029
Tssr60611 6 42351291 to 42351300 9 - TSS region transcription start site region 60611
Tssr56030 6 42351296 to 42351311 15 + TSS region transcription start site region 56030
Tssr60612 6 42351305 to 42351322 17 - TSS region transcription start site region 60612
Tssr56031 6 42351323 to 42351334 11 + TSS region transcription start site region 56031
Tssr60613 6 42351332 to 42351362 30 - TSS region transcription start site region 60613
Tssr56032 6 42351475 to 42351501 26 + TSS region transcription start site region 56032
Tssr60614 6 42351527 to 42351566 39 - TSS region transcription start site region 60614
Tssr56033 6 42351542 to 42351557 15 + TSS region transcription start site region 56033
Tssr56034 6 42351566 to 42351589 23 + TSS region transcription start site region 56034
Tssr60615 6 42351593 to 42351653 60 - TSS region transcription start site region 60615
Tssr56035 6 42351698 to 42351707 9 + TSS region transcription start site region 56035
Tssr56036 6 42351750 to 42351759 9 + TSS region transcription start site region 56036
Tssr56037 6 42351856 to 42351885 29 + TSS region transcription start site region 56037