Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:41377453-41717464

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200 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tcrb 6 40891296 to 41558371 667075 + complex/cluster/region T cell receptor beta chain
Prss3 6 41373759 to 41377613 3854 - protein coding gene protease, serine 3
Tssr60561 6 41377604 to 41377618 14 - TSS region transcription start site region 60561
Gm5771 6 41392356 to 41397230 4874 + protein coding gene predicted gene 5771
Tssr55872 6 41392371 to 41392380 9 + TSS region transcription start site region 55872
Gm38306 6 41406915 to 41407267 352 + pseudogene predicted gene, 38306
Gm5409 6 41416912 to 41419589 2677 + pseudogene predicted pseudogene 5409
Gm10334 6 41442214 to 41446097 3883 - protein coding gene predicted gene 10334
Tssr60562 6 41446062 to 41446086 24 - TSS region transcription start site region 60562
Tssr55873 6 41458898 to 41458901 3 + TSS region transcription start site region 55873
Tssr55874 6 41458923 to 41458936 13 + TSS region transcription start site region 55874
Prss1 6 41458932 to 41463786 4854 + protein coding gene protease, serine 1 (trypsin 1)
Gm37301 6 41480508 to 41481719 1211 + pseudogene predicted gene, 37301
Gm29813 6 41494521 to 41494967 446 - pseudogene predicted gene, 29813
Gm37841 6 41496929 to 41497304 375 + pseudogene predicted gene, 37841
Gm38018 6 41504124 to 41505654 1530 + pseudogene predicted gene, 38018
Tssr60563 6 41519897 to 41519912 15 - TSS region transcription start site region 60563
Tssr55875 6 41521782 to 41521797 15 + TSS region transcription start site region 55875
Prss2 6 41521787 to 41525079 3292 + protein coding gene protease, serine 2
Tssr55876 6 41522863 to 41522892 29 + TSS region transcription start site region 55876
Tssr55877 6 41523730 to 41523754 24 + TSS region transcription start site region 55877
Tssr55878 6 41523760 to 41523771 11 + TSS region transcription start site region 55878
Tssr55879 6 41523774 to 41523785 11 + TSS region transcription start site region 55879
Tssr55880 6 41523897 to 41523923 26 + TSS region transcription start site region 55880
Tssr60564 6 41523939 to 41523954 15 - TSS region transcription start site region 60564
Tssr55881 6 41523942 to 41523958 16 + TSS region transcription start site region 55881
Tssr60565 6 41523962 to 41523982 20 - TSS region transcription start site region 60565
Tssr55882 6 41523988 to 41524002 14 + TSS region transcription start site region 55882
Tssr55883 6 41524009 to 41524033 24 + TSS region transcription start site region 55883
Tssr55884 6 41524927 to 41524937 10 + TSS region transcription start site region 55884
Tssr55885 6 41525023 to 41525043 20 + TSS region transcription start site region 55885
Tssr60566 6 41532818 to 41532829 11 - TSS region transcription start site region 60566
Tssr60567 6 41532868 to 41532876 8 - TSS region transcription start site region 60567
Tssr55886 6 41532921 to 41532934 13 + TSS region transcription start site region 55886
Tssr55887 6 41532949 to 41532970 21 + TSS region transcription start site region 55887
Tssr55888 6 41532982 to 41533003 21 + TSS region transcription start site region 55888
Tssr55889 6 41533008 to 41533015 7 + TSS region transcription start site region 55889
Tssr55890 6 41533017 to 41533037 20 + TSS region transcription start site region 55890
Tssr55891 6 41533038 to 41533047 9 + TSS region transcription start site region 55891
Tssr55892 6 41533086 to 41533097 11 + TSS region transcription start site region 55892
Tssr55893 6 41533114 to 41533132 18 + TSS region transcription start site region 55893
Tssr55894 6 41533147 to 41533159 12 + TSS region transcription start site region 55894
Tssr55895 6 41533174 to 41533189 15 + TSS region transcription start site region 55895
Trbd1 6 41533201 to 41533212 11 + gene segment T cell receptor beta, D region 1
Tssr55896 6 41533204 to 41533219 15 + TSS region transcription start site region 55896
Tssr55897 6 41533220 to 41533227 7 + TSS region transcription start site region 55897
Tssr55898 6 41533246 to 41533257 11 + TSS region transcription start site region 55898
Tssr55899 6 41533267 to 41533278 11 + TSS region transcription start site region 55899
Tssr55900 6 41533506 to 41533518 12 + TSS region transcription start site region 55900
Tssr55901 6 41533671 to 41533682 11 + TSS region transcription start site region 55901
Tssr55902 6 41533728 to 41533752 24 + TSS region transcription start site region 55902
Tssr55903 6 41533766 to 41533787 21 + TSS region transcription start site region 55903
Tssr55904 6 41533789 to 41533800 11 + TSS region transcription start site region 55904
Tssr55905 6 41533818 to 41533835 17 + TSS region transcription start site region 55905
Tssr55906 6 41533854 to 41533881 27 + TSS region transcription start site region 55906
Trbj1-1 6 41533864 to 41533911 47 + gene segment T cell receptor beta joining 1-1
Tssr55907 6 41533905 to 41533910 5 + TSS region transcription start site region 55907
Tssr55908 6 41533992 to 41534015 23 + TSS region transcription start site region 55908
Trbj1-2 6 41534001 to 41534048 47 + gene segment T cell receptor beta joining 1-2
Tssr55909 6 41534315 to 41534338 23 + TSS region transcription start site region 55909
Trbj1-3 6 41534323 to 41534372 49 + gene segment T cell receptor beta joining 1-3
Tssr55910 6 41534804 to 41534827 23 + TSS region transcription start site region 55910
Trbj1-4 6 41534811 to 41534861 50 + gene segment T cell receptor beta joining 1-4
Tssr55911 6 41534888 to 41534896 8 + TSS region transcription start site region 55911
Tssr55912 6 41535047 to 41535067 20 + TSS region transcription start site region 55912
Tssr55913 6 41535076 to 41535097 21 + TSS region transcription start site region 55913
Trbj1-5 6 41535084 to 41535133 49 + gene segment T cell receptor beta joining 1-5
Tssr55914 6 41535468 to 41535479 11 + TSS region transcription start site region 55914
Tssr55915 6 41535491 to 41535498 7 + TSS region transcription start site region 55915
Tssr55916 6 41535513 to 41535529 16 + TSS region transcription start site region 55916
Tssr55917 6 41535545 to 41535576 31 + TSS region transcription start site region 55917
Trbj1-6 6 41535554 to 41535606 52 + gene segment T cell receptor beta joining 1-6
Trbj1-7 6 41535642 to 41535687 45 + gene segment T cell receptor beta joining 1-7
Tssr55918 6 41536483 to 41536517 34 + TSS region transcription start site region 55918
Trbc1 6 41538219 to 41539665 1446 + gene segment T cell receptor beta, constant region 1
Tssr60568 6 41538687 to 41538692 5 - TSS region transcription start site region 60568
Tssr55919 6 41539069 to 41539080 11 + TSS region transcription start site region 55919
Tssr55920 6 41539199 to 41539211 12 + TSS region transcription start site region 55920
Tssr55921 6 41539241 to 41539253 12 + TSS region transcription start site region 55921
Tssr60569 6 41539281 to 41539294 13 - TSS region transcription start site region 60569
Tssr60570 6 41539855 to 41539898 43 - TSS region transcription start site region 60570
Tssr60571 6 41541259 to 41541267 8 - TSS region transcription start site region 60571
Tssr60572 6 41541753 to 41541777 24 - TSS region transcription start site region 60572
Tssr60573 6 41541782 to 41541799 17 - TSS region transcription start site region 60573
Tssr60574 6 41541802 to 41541816 14 - TSS region transcription start site region 60574
Tssr55922 6 41541890 to 41541903 13 + TSS region transcription start site region 55922
Tssr55923 6 41541944 to 41541954 10 + TSS region transcription start site region 55923
Tssr55924 6 41542045 to 41542079 34 + TSS region transcription start site region 55924
Trbd2 6 41542163 to 41542176 13 + gene segment T cell receptor beta, D region 2
Tssr55925 6 41542544 to 41542557 13 + TSS region transcription start site region 55925
Tssr55926 6 41542564 to 41542581 17 + TSS region transcription start site region 55926
Tssr55927 6 41542606 to 41542622 16 + TSS region transcription start site region 55927
Tssr55928 6 41542644 to 41542663 19 + TSS region transcription start site region 55928
Tssr55929 6 41542720 to 41542777 57 + TSS region transcription start site region 55929
Trbj2-1 6 41542754 to 41542803 49 + gene segment T cell receptor beta joining 2-1
Tssr55930 6 41542949 to 41542972 23 + TSS region transcription start site region 55930
Trbj2-2 6 41542957 to 41543007 50 + gene segment T cell receptor beta joining 2-2
Tssr55931 6 41543066 to 41543077 11 + TSS region transcription start site region 55931
Tssr55932 6 41543198 to 41543205 7 + TSS region transcription start site region 55932
Tssr55933 6 41543216 to 41543234 18 + TSS region transcription start site region 55933
Trbj2-3 6 41543223 to 41543271 48 + gene segment T cell receptor beta joining 2-3
Tssr55934 6 41543322 to 41543333 11 + TSS region transcription start site region 55934
Tssr55935 6 41543339 to 41543351 12 + TSS region transcription start site region 55935
Tssr55936 6 41543354 to 41543379 25 + TSS region transcription start site region 55936
Trbj2-4 6 41543362 to 41543410 48 + gene segment T cell receptor beta joining 2-4
Tssr55937 6 41543445 to 41543473 28 + TSS region transcription start site region 55937
Trbj2-5 6 41543453 to 41543501 48 + gene segment T cell receptor beta joining 2-5
Tssr55938 6 41543495 to 41543504 9 + TSS region transcription start site region 55938
Tssr60575 6 41543545 to 41543555 10 - TSS region transcription start site region 60575
Tssr55939 6 41543572 to 41543577 5 + TSS region transcription start site region 55939
Tssr55940 6 41543581 to 41543620 39 + TSS region transcription start site region 55940
Trbj2-6 6 41543598 to 41543645 47 + pseudogenic gene segment T cell receptor beta joining 2-6
Tssr55941 6 41543625 to 41543642 17 + TSS region transcription start site region 55941
Tssr55942 6 41543670 to 41543703 33 + TSS region transcription start site region 55942
Tssr55943 6 41543802 to 41543827 25 + TSS region transcription start site region 55943
Trbj2-7 6 41543810 to 41543856 46 + gene segment T cell receptor beta joining 2-7
Tssr55944 6 41544002 to 41544029 27 + TSS region transcription start site region 55944
Tssr60576 6 41544269 to 41544279 10 - TSS region transcription start site region 60576
Tssr60577 6 41544356 to 41544369 13 - TSS region transcription start site region 60577
Tssr60578 6 41544377 to 41544390 13 - TSS region transcription start site region 60578
Tssr55945 6 41544509 to 41544520 11 + TSS region transcription start site region 55945
Tssr55946 6 41544820 to 41544833 13 + TSS region transcription start site region 55946
Tssr60579 6 41544834 to 41544857 23 - TSS region transcription start site region 60579
Tssr1821 6 41544865 to 41544890 25 + TSS region transcription start site region 1821
Tssr55947 6 41544994 to 41545017 23 + TSS region transcription start site region 55947
Tssr55948 6 41546077 to 41546095 18 + TSS region transcription start site region 55948
Tssr55949 6 41546263 to 41546306 43 + TSS region transcription start site region 55949
Tssr55950 6 41546570 to 41546577 7 + TSS region transcription start site region 55950
Trbc2 6 41546730 to 41548181 1451 + gene segment T cell receptor beta, constant 2
Tssr55951 6 41547297 to 41547308 11 + TSS region transcription start site region 55951
Tssr55952 6 41547344 to 41547378 34 + TSS region transcription start site region 55952
Tssr55953 6 41547380 to 41547385 5 + TSS region transcription start site region 55953
Tssr55954 6 41547428 to 41547435 7 + TSS region transcription start site region 55954
Tssr55955 6 41547453 to 41547464 11 + TSS region transcription start site region 55955
Tssr55956 6 41547494 to 41547508 14 + TSS region transcription start site region 55956
Tssr1822 6 41547520 to 41547521 1 + TSS region transcription start site region 1822
Tssr55957 6 41547782 to 41547794 12 + TSS region transcription start site region 55957
Tssr55958 6 41553537 to 41553559 22 + TSS region transcription start site region 55958
Tssr55959 6 41553564 to 41553595 31 + TSS region transcription start site region 55959
Tssr55960 6 41553624 to 41553632 8 + TSS region transcription start site region 55960
Tssr60580 6 41554410 to 41554423 13 - TSS region transcription start site region 60580
Tssr55961 6 41554515 to 41554523 8 + TSS region transcription start site region 55961
Tssr55962 6 41554721 to 41554742 21 + TSS region transcription start site region 55962
Tssr55963 6 41554810 to 41554831 21 + TSS region transcription start site region 55963
Tssr55964 6 41554854 to 41554865 11 + TSS region transcription start site region 55964
Tssr55965 6 41557678 to 41557733 55 + TSS region transcription start site region 55965
Trbv31 6 41557693 to 41558371 678 - gene segment T cell receptor beta, variable 31
Tssr60581 6 41557817 to 41557835 18 - TSS region transcription start site region 60581
Tssr60582 6 41558358 to 41558371 13 - TSS region transcription start site region 60582
Tssr60583 6 41558391 to 41558414 23 - TSS region transcription start site region 60583
Gm38582 6 41558488 to 41603450 44962 + lncRNA gene predicted gene, 38582
Tssr55966 6 41558502 to 41558522 20 + TSS region transcription start site region 55966
Tssr55967 6 41558529 to 41558544 15 + TSS region transcription start site region 55967
Tssr55968 6 41558545 to 41558569 24 + TSS region transcription start site region 55968
Tssr55969 6 41559660 to 41559676 16 + TSS region transcription start site region 55969
B630006K09Rik 6 41567293 to 41570710 3417 unclassified gene RIKEN cDNA B630006K09 gene
Tssr55970 6 41570627 to 41570632 5 + TSS region transcription start site region 55970
Tssr55971 6 41572177 to 41572185 8 + TSS region transcription start site region 55971
Tssr55972 6 41582086 to 41582089 3 + TSS region transcription start site region 55972
Tssr55973 6 41590157 to 41590160 3 + TSS region transcription start site region 55973
D6Mit117 6 41598320 to 41598437 117 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 117
Gm27549 6 41602244 to 41602305 61 - snRNA gene predicted gene, 27549
Cpgi17333 6 41604607 to 41605921 1314 CpG island CpG island 17333
Tssr55974 6 41605024 to 41605033 9 + TSS region transcription start site region 55974
Tssr55975 6 41605148 to 41605175 27 + TSS region transcription start site region 55975
Ephb6 6 41605482 to 41620509 15027 + protein coding gene Eph receptor B6
Tssr55976 6 41605496 to 41605569 73 + TSS region transcription start site region 55976
Tssr55977 6 41605651 to 41605671 20 + TSS region transcription start site region 55977
Trpv6 6 41620624 to 41636405 15781 - protein coding gene transient receptor potential cation channel, subfamily V, member 6
Gm38795 6 41621779 to 41624061 2282 + lncRNA gene predicted gene, 38795
Tssr60584 6 41636310 to 41636313 3 - TSS region transcription start site region 60584
Tssr60585 6 41636337 to 41636365 28 - TSS region transcription start site region 60585
Tssr60586 6 41636372 to 41636384 12 - TSS region transcription start site region 60586
Tssr60587 6 41636389 to 41636409 20 - TSS region transcription start site region 60587
Tssr55978 6 41641718 to 41641733 15 + TSS region transcription start site region 55978
Gm34642 6 41641730 to 41658800 17070 + lncRNA gene predicted gene, 34642
Tssr55979 6 41641735 to 41641753 18 + TSS region transcription start site region 55979
Trpv5 6 41652173 to 41680769 28596 - protein coding gene transient receptor potential cation channel, subfamily V, member 5
Tssr60588 6 41680730 to 41680743 13 - TSS region transcription start site region 60588
Tssr60589 6 41680785 to 41680796 11 - TSS region transcription start site region 60589
Tssr60590 6 41680808 to 41680818 10 - TSS region transcription start site region 60590
Tssr60591 6 41680834 to 41680844 10 - TSS region transcription start site region 60591
Tssr55980 6 41684353 to 41684358 5 + TSS region transcription start site region 55980
Tssr55981 6 41684363 to 41684368 5 + TSS region transcription start site region 55981
Tssr55982 6 41684378 to 41684402 24 + TSS region transcription start site region 55982
Tssr55983 6 41684414 to 41684441 27 + TSS region transcription start site region 55983
Llcfc1 6 41684431 to 41685717 1286 + protein coding gene LLLL and CFNLAS motif containing 1
Tssr55984 6 41684447 to 41684454 7 + TSS region transcription start site region 55984
Kel 6 41686329 to 41704334 18005 - protein coding gene Kell blood group
Tssr60592 6 41687517 to 41687523 6 - TSS region transcription start site region 60592
Tssr60593 6 41687556 to 41687584 28 - TSS region transcription start site region 60593
Gm37527 6 41692640 to 41696186 3546 - unclassified gene predicted gene, 37527
Tssr60594 6 41693300 to 41693304 4 - TSS region transcription start site region 60594
Tssr60595 6 41699929 to 41699930 1 - TSS region transcription start site region 60595
Tssr60596 6 41700726 to 41700729 3 - TSS region transcription start site region 60596
Tssr60597 6 41701909 to 41701913 4 - TSS region transcription start site region 60597
Tssr60598 6 41703084 to 41703098 14 - TSS region transcription start site region 60598
Tssr60599 6 41704263 to 41704323 60 - TSS region transcription start site region 60599
Tssr60600 6 41704340 to 41704351 11 - TSS region transcription start site region 60600
Gm38796 6 41706187 to 41710140 3953 + lncRNA gene predicted gene, 38796