Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:41212604-41542618

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124 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr55860 6 41216050 to 41216069 19 + TSS region transcription start site region 55860
Trbv23 6 41216073 to 41216526 453 + gene segment T cell receptor beta, variable V23
Tssr1818 6 41216086 to 41216097 11 + TSS region transcription start site region 1818
Tssr55861 6 41218074 to 41218095 21 + TSS region transcription start site region 55861
Trbv24 6 41218091 to 41218557 466 + gene segment T cell receptor beta, variable 24
Tssr60556 6 41218550 to 41218578 28 - TSS region transcription start site region 60556
Tssr60557 6 41218596 to 41218608 12 - TSS region transcription start site region 60557
Trbv25 6 41221931 to 41222203 272 + pseudogenic gene segment T cell receptor beta variable 25
Tssr55862 6 41227496 to 41227530 34 + TSS region transcription start site region 55862
Trbv26 6 41227525 to 41227913 388 + gene segment T cell receptor beta, variable 26
Tssr55863 6 41227536 to 41227549 13 + TSS region transcription start site region 55863
Gm2719 6 41253328 to 41253771 443 + pseudogene predicted pseudogene 2719
Trbv27 6 41258303 to 41258579 276 + pseudogenic gene segment T cell receptor beta variable 27
Trbv28 6 41266887 to 41267150 263 + pseudogenic gene segment T cell receptor beta variable 28
Tssr55864 6 41271377 to 41271411 34 + TSS region transcription start site region 55864
Trbv29 6 41271403 to 41271881 478 + pseudogenic gene segment T cell receptor beta, variable 29
Tssr55865 6 41271421 to 41271424 3 + TSS region transcription start site region 55865
Tssr55866 6 41281267 to 41281304 37 + TSS region transcription start site region 55866
Trbv30 6 41281376 to 41281990 614 + gene segment T cell receptor beta, variable 30
Tssr55867 6 41302265 to 41302279 14 + TSS region transcription start site region 55867
Try4 6 41302272 to 41305533 3261 + protein coding gene trypsin 4
Gm18964 6 41306203 to 41306747 544 - pseudogene predicted gene, 18964
Try5 6 41311232 to 41314710 3478 - protein coding gene trypsin 5
Tssr60558 6 41311305 to 41311317 12 - TSS region transcription start site region 60558
Tssr1819 6 41312277 to 41312297 20 + TSS region transcription start site region 1819
Tssr1820 6 41312310 to 41312334 24 + TSS region transcription start site region 1820
Tssr60559 6 41313445 to 41313468 23 - TSS region transcription start site region 60559
Tssr60560 6 41314700 to 41314715 15 - TSS region transcription start site region 60560
Tssr55868 6 41339781 to 41339788 7 + TSS region transcription start site region 55868
Tssr55869 6 41339800 to 41339811 11 + TSS region transcription start site region 55869
Tssr55870 6 41339818 to 41339851 33 + TSS region transcription start site region 55870
Try10 6 41354105 to 41357914 3809 + protein coding gene trypsin 10
Tssr55871 6 41354170 to 41354185 15 + TSS region transcription start site region 55871
Prss3 6 41373759 to 41377613 3854 - protein coding gene protease, serine 3
Tssr60561 6 41377604 to 41377618 14 - TSS region transcription start site region 60561
Gm5771 6 41392356 to 41397230 4874 + protein coding gene predicted gene 5771
Tssr55872 6 41392371 to 41392380 9 + TSS region transcription start site region 55872
Gm38306 6 41406915 to 41407267 352 + pseudogene predicted gene, 38306
Gm5409 6 41416912 to 41419589 2677 + pseudogene predicted pseudogene 5409
Gm10334 6 41442214 to 41446097 3883 - protein coding gene predicted gene 10334
Tssr60562 6 41446062 to 41446086 24 - TSS region transcription start site region 60562
Tssr55873 6 41458898 to 41458901 3 + TSS region transcription start site region 55873
Tssr55874 6 41458923 to 41458936 13 + TSS region transcription start site region 55874
Prss1 6 41458932 to 41463786 4854 + protein coding gene protease, serine 1 (trypsin 1)
Gm37301 6 41480508 to 41481719 1211 + pseudogene predicted gene, 37301
Gm29813 6 41494521 to 41494967 446 - pseudogene predicted gene, 29813
Gm37841 6 41496929 to 41497304 375 + pseudogene predicted gene, 37841
Gm38018 6 41504124 to 41505654 1530 + pseudogene predicted gene, 38018
Tssr60563 6 41519897 to 41519912 15 - TSS region transcription start site region 60563
Tssr55875 6 41521782 to 41521797 15 + TSS region transcription start site region 55875
Prss2 6 41521787 to 41525079 3292 + protein coding gene protease, serine 2
Tssr55876 6 41522863 to 41522892 29 + TSS region transcription start site region 55876
Tssr55877 6 41523730 to 41523754 24 + TSS region transcription start site region 55877
Tssr55878 6 41523760 to 41523771 11 + TSS region transcription start site region 55878
Tssr55879 6 41523774 to 41523785 11 + TSS region transcription start site region 55879
Tssr55880 6 41523897 to 41523923 26 + TSS region transcription start site region 55880
Tssr60564 6 41523939 to 41523954 15 - TSS region transcription start site region 60564
Tssr55881 6 41523942 to 41523958 16 + TSS region transcription start site region 55881
Tssr60565 6 41523962 to 41523982 20 - TSS region transcription start site region 60565
Tssr55882 6 41523988 to 41524002 14 + TSS region transcription start site region 55882
Tssr55883 6 41524009 to 41524033 24 + TSS region transcription start site region 55883
Tssr55884 6 41524927 to 41524937 10 + TSS region transcription start site region 55884
Tssr55885 6 41525023 to 41525043 20 + TSS region transcription start site region 55885
Tssr60566 6 41532818 to 41532829 11 - TSS region transcription start site region 60566
Tssr60567 6 41532868 to 41532876 8 - TSS region transcription start site region 60567
Tssr55886 6 41532921 to 41532934 13 + TSS region transcription start site region 55886
Tssr55887 6 41532949 to 41532970 21 + TSS region transcription start site region 55887
Tssr55888 6 41532982 to 41533003 21 + TSS region transcription start site region 55888
Tssr55889 6 41533008 to 41533015 7 + TSS region transcription start site region 55889
Tssr55890 6 41533017 to 41533037 20 + TSS region transcription start site region 55890
Tssr55891 6 41533038 to 41533047 9 + TSS region transcription start site region 55891
Tssr55892 6 41533086 to 41533097 11 + TSS region transcription start site region 55892
Tssr55893 6 41533114 to 41533132 18 + TSS region transcription start site region 55893
Tssr55894 6 41533147 to 41533159 12 + TSS region transcription start site region 55894
Tssr55895 6 41533174 to 41533189 15 + TSS region transcription start site region 55895
Trbd1 6 41533201 to 41533212 11 + gene segment T cell receptor beta, D region 1
Tssr55896 6 41533204 to 41533219 15 + TSS region transcription start site region 55896
Tssr55897 6 41533220 to 41533227 7 + TSS region transcription start site region 55897
Tssr55898 6 41533246 to 41533257 11 + TSS region transcription start site region 55898
Tssr55899 6 41533267 to 41533278 11 + TSS region transcription start site region 55899
Tssr55900 6 41533506 to 41533518 12 + TSS region transcription start site region 55900
Tssr55901 6 41533671 to 41533682 11 + TSS region transcription start site region 55901
Tssr55902 6 41533728 to 41533752 24 + TSS region transcription start site region 55902
Tssr55903 6 41533766 to 41533787 21 + TSS region transcription start site region 55903
Tssr55904 6 41533789 to 41533800 11 + TSS region transcription start site region 55904
Tssr55905 6 41533818 to 41533835 17 + TSS region transcription start site region 55905
Tssr55906 6 41533854 to 41533881 27 + TSS region transcription start site region 55906
Trbj1-1 6 41533864 to 41533911 47 + gene segment T cell receptor beta joining 1-1
Tssr55907 6 41533905 to 41533910 5 + TSS region transcription start site region 55907
Tssr55908 6 41533992 to 41534015 23 + TSS region transcription start site region 55908
Trbj1-2 6 41534001 to 41534048 47 + gene segment T cell receptor beta joining 1-2
Tssr55909 6 41534315 to 41534338 23 + TSS region transcription start site region 55909
Trbj1-3 6 41534323 to 41534372 49 + gene segment T cell receptor beta joining 1-3
Tssr55910 6 41534804 to 41534827 23 + TSS region transcription start site region 55910
Trbj1-4 6 41534811 to 41534861 50 + gene segment T cell receptor beta joining 1-4
Tssr55911 6 41534888 to 41534896 8 + TSS region transcription start site region 55911
Tssr55912 6 41535047 to 41535067 20 + TSS region transcription start site region 55912
Tssr55913 6 41535076 to 41535097 21 + TSS region transcription start site region 55913
Trbj1-5 6 41535084 to 41535133 49 + gene segment T cell receptor beta joining 1-5
Tssr55914 6 41535468 to 41535479 11 + TSS region transcription start site region 55914
Tssr55915 6 41535491 to 41535498 7 + TSS region transcription start site region 55915
Tssr55916 6 41535513 to 41535529 16 + TSS region transcription start site region 55916
Tssr55917 6 41535545 to 41535576 31 + TSS region transcription start site region 55917
Trbj1-6 6 41535554 to 41535606 52 + gene segment T cell receptor beta joining 1-6
Trbj1-7 6 41535642 to 41535687 45 + gene segment T cell receptor beta joining 1-7
Tssr55918 6 41536483 to 41536517 34 + TSS region transcription start site region 55918
Trbc1 6 41538219 to 41539665 1446 + gene segment T cell receptor beta, constant region 1
Tssr60568 6 41538687 to 41538692 5 - TSS region transcription start site region 60568
Tssr55919 6 41539069 to 41539080 11 + TSS region transcription start site region 55919
Tssr55920 6 41539199 to 41539211 12 + TSS region transcription start site region 55920
Tssr55921 6 41539241 to 41539253 12 + TSS region transcription start site region 55921
Tssr60569 6 41539281 to 41539294 13 - TSS region transcription start site region 60569
Tssr60570 6 41539855 to 41539898 43 - TSS region transcription start site region 60570
Tssr60571 6 41541259 to 41541267 8 - TSS region transcription start site region 60571
Tssr60572 6 41541753 to 41541777 24 - TSS region transcription start site region 60572
Tssr60573 6 41541782 to 41541799 17 - TSS region transcription start site region 60573
Tssr60574 6 41541802 to 41541816 14 - TSS region transcription start site region 60574
Tssr55922 6 41541890 to 41541903 13 + TSS region transcription start site region 55922
Tssr55923 6 41541944 to 41541954 10 + TSS region transcription start site region 55923
Tssr55924 6 41542045 to 41542079 34 + TSS region transcription start site region 55924
Trbd2 6 41542163 to 41542176 13 + gene segment T cell receptor beta, D region 2
Tssr55925 6 41542544 to 41542557 13 + TSS region transcription start site region 55925
Tssr55926 6 41542564 to 41542581 17 + TSS region transcription start site region 55926
Tssr55927 6 41542606 to 41542622 16 + TSS region transcription start site region 55927