Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:41156232-41469710

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr55843 6 41163014 to 41163030 16 + TSS region transcription start site region 55843
Trbv17 6 41163092 to 41163556 464 + gene segment T cell receptor beta, variable 17
Tssr60554 6 41163553 to 41163576 23 - TSS region transcription start site region 60554
Trbv18 6 41175315 to 41175608 293 + pseudogenic gene segment T cell receptor beta variable 18
Tssr55844 6 41177441 to 41177468 27 + TSS region transcription start site region 55844
Tssr55845 6 41177504 to 41177516 12 + TSS region transcription start site region 55845
Tssr55846 6 41178162 to 41178166 4 + TSS region transcription start site region 55846
Tssr55847 6 41178308 to 41178317 9 + TSS region transcription start site region 55847
Tssr55848 6 41178320 to 41178335 15 + TSS region transcription start site region 55848
Tssr55849 6 41178380 to 41178401 21 + TSS region transcription start site region 55849
Tssr55850 6 41178408 to 41178453 45 + TSS region transcription start site region 55850
Tssr55851 6 41178483 to 41178506 23 + TSS region transcription start site region 55851
Trbv19 6 41178589 to 41179048 459 + gene segment T cell receptor beta, variable 19
Tssr55852 6 41178731 to 41178748 17 + TSS region transcription start site region 55852
Tssr55853 6 41178838 to 41178860 22 + TSS region transcription start site region 55853
Tssr55854 6 41178982 to 41178996 14 + TSS region transcription start site region 55854
D6Mit182 6 41182508 to 41182652 144 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 182
D6Mit182.1 6 41182633 to 41182761 128 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 182.1
Tssr55855 6 41187392 to 41187403 11 + TSS region transcription start site region 55855
Tssr55856 6 41188198 to 41188207 9 + TSS region transcription start site region 55856
Tssr55857 6 41188216 to 41188242 26 + TSS region transcription start site region 55857
Trbv20 6 41188273 to 41188977 704 + gene segment T cell receptor beta, variable 20
Tssr55858 6 41188312 to 41188334 22 + TSS region transcription start site region 55858
Tssr55859 6 41188395 to 41188406 11 + TSS region transcription start site region 55859
D6Mit311 6 41195002 to 41195118 116 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 311
Tssr60555 6 41197007 to 41197021 14 - TSS region transcription start site region 60555
Trbv21 6 41202587 to 41203044 457 + gene segment T cell receptor beta, variable 21
Trbv22 6 41212244 to 41212534 290 + pseudogenic gene segment T cell receptor beta variable 22
Tssr55860 6 41216050 to 41216069 19 + TSS region transcription start site region 55860
Trbv23 6 41216073 to 41216526 453 + gene segment T cell receptor beta, variable V23
Tssr1818 6 41216086 to 41216097 11 + TSS region transcription start site region 1818
Tssr55861 6 41218074 to 41218095 21 + TSS region transcription start site region 55861
Trbv24 6 41218091 to 41218557 466 + gene segment T cell receptor beta, variable 24
Tssr60556 6 41218550 to 41218578 28 - TSS region transcription start site region 60556
Tssr60557 6 41218596 to 41218608 12 - TSS region transcription start site region 60557
Trbv25 6 41221931 to 41222203 272 + pseudogenic gene segment T cell receptor beta variable 25
Tssr55862 6 41227496 to 41227530 34 + TSS region transcription start site region 55862
Trbv26 6 41227525 to 41227913 388 + gene segment T cell receptor beta, variable 26
Tssr55863 6 41227536 to 41227549 13 + TSS region transcription start site region 55863
Gm2719 6 41253328 to 41253771 443 + pseudogene predicted pseudogene 2719
Trbv27 6 41258303 to 41258579 276 + pseudogenic gene segment T cell receptor beta variable 27
Trbv28 6 41266887 to 41267150 263 + pseudogenic gene segment T cell receptor beta variable 28
Tssr55864 6 41271377 to 41271411 34 + TSS region transcription start site region 55864
Trbv29 6 41271403 to 41271881 478 + pseudogenic gene segment T cell receptor beta, variable 29
Tssr55865 6 41271421 to 41271424 3 + TSS region transcription start site region 55865
Tssr55866 6 41281267 to 41281304 37 + TSS region transcription start site region 55866
Trbv30 6 41281376 to 41281990 614 + gene segment T cell receptor beta, variable 30
Tssr55867 6 41302265 to 41302279 14 + TSS region transcription start site region 55867
Try4 6 41302272 to 41305533 3261 + protein coding gene trypsin 4
Gm18964 6 41306203 to 41306747 544 - pseudogene predicted gene, 18964
Try5 6 41311232 to 41314710 3478 - protein coding gene trypsin 5
Tssr60558 6 41311305 to 41311317 12 - TSS region transcription start site region 60558
Tssr1819 6 41312277 to 41312297 20 + TSS region transcription start site region 1819
Tssr1820 6 41312310 to 41312334 24 + TSS region transcription start site region 1820
Tssr60559 6 41313445 to 41313468 23 - TSS region transcription start site region 60559
Tssr60560 6 41314700 to 41314715 15 - TSS region transcription start site region 60560
Tssr55868 6 41339781 to 41339788 7 + TSS region transcription start site region 55868
Tssr55869 6 41339800 to 41339811 11 + TSS region transcription start site region 55869
Tssr55870 6 41339818 to 41339851 33 + TSS region transcription start site region 55870
Try10 6 41354105 to 41357914 3809 + protein coding gene trypsin 10
Tssr55871 6 41354170 to 41354185 15 + TSS region transcription start site region 55871
Prss3 6 41373759 to 41377613 3854 - protein coding gene protease, serine 3
Tssr60561 6 41377604 to 41377618 14 - TSS region transcription start site region 60561
Gm5771 6 41392356 to 41397230 4874 + protein coding gene predicted gene 5771
Tssr55872 6 41392371 to 41392380 9 + TSS region transcription start site region 55872
Gm38306 6 41406915 to 41407267 352 + pseudogene predicted gene, 38306
Gm5409 6 41416912 to 41419589 2677 + pseudogene predicted pseudogene 5409
Gm10334 6 41442214 to 41446097 3883 - protein coding gene predicted gene 10334
Tssr60562 6 41446062 to 41446086 24 - TSS region transcription start site region 60562
Tssr55873 6 41458898 to 41458901 3 + TSS region transcription start site region 55873
Tssr55874 6 41458923 to 41458936 13 + TSS region transcription start site region 55874
Prss1 6 41458932 to 41463786 4854 + protein coding gene protease, serine 1 (trypsin 1)