Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:41048582-41178593

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trbv3 6 41048394 to 41048824 430 + gene segment T cell receptor beta, variable 3
Tssr55796 6 41055863 to 41055893 30 + TSS region transcription start site region 55796
5830405F06Rik 6 41055883 to 41063102 7219 + lincRNA gene RIKEN cDNA 5830405F06 gene
Tssr55797 6 41055901 to 41055927 26 + TSS region transcription start site region 55797
Tssr55798 6 41057728 to 41057737 9 + TSS region transcription start site region 55798
Tssr55799 6 41058394 to 41058417 23 + TSS region transcription start site region 55799
Tssr55800 6 41058552 to 41058564 12 + TSS region transcription start site region 55800
Tssr55801 6 41059142 to 41059164 22 + TSS region transcription start site region 55801
Tssr55802 6 41059338 to 41059391 53 + TSS region transcription start site region 55802
Tssr55803 6 41059400 to 41059430 30 + TSS region transcription start site region 55803
Tssr55804 6 41059433 to 41059455 22 + TSS region transcription start site region 55804
Trbv4 6 41059443 to 41059886 443 + gene segment T cell receptor beta, variable 10
Tssr55805 6 41062291 to 41062302 11 + TSS region transcription start site region 55805
Tssr55806 6 41062321 to 41062338 17 + TSS region transcription start site region 55806
Tssr55807 6 41062342 to 41062356 14 + TSS region transcription start site region 55807
Trbv5 6 41062359 to 41062803 444 + gene segment T cell receptor beta, variable 5
Trbv6 6 41066879 to 41067154 275 + pseudogenic gene segment T cell receptor beta variable 6
Trbv7 6 41080253 to 41080654 401 + pseudogenic gene segment T cell receptor beta variable 7
Gm49885 6 41081587 to 41091983 10396 + sense overlapping lncRNA gene predicted gene, 49885
Trbv8 6 41084821 to 41085105 284 + pseudogenic gene segment T cell receptor beta variable 8
Trbv9 6 41087999 to 41088288 289 + pseudogenic gene segment T cell receptor beta variable 9
Trbv10 6 41091940 to 41092228 288 + pseudogenic gene segment T cell receptor beta variable 10
Trbv11 6 41107044 to 41107303 259 + pseudogenic gene segment T cell receptor beta variable 11
Tssr55808 6 41113368 to 41113379 11 + TSS region transcription start site region 55808
Tssr55809 6 41113516 to 41113547 31 + TSS region transcription start site region 55809
Tssr55810 6 41113552 to 41113581 29 + TSS region transcription start site region 55810
Trbv12-1 6 41113567 to 41114067 500 + gene segment T cell receptor beta, variable 12-1
Tssr55811 6 41113582 to 41113593 11 + TSS region transcription start site region 55811
Tssr55812 6 41115998 to 41115999 1 + TSS region transcription start site region 55812
Tssr55813 6 41116000 to 41116025 25 + TSS region transcription start site region 55813
Trbv13-1 6 41116036 to 41116468 432 + gene segment T cell receptor beta, variable 13-1
Tssr55814 6 41116037 to 41116055 18 + TSS region transcription start site region 55814
Tssr55815 6 41118449 to 41118460 11 + TSS region transcription start site region 55815
Tssr55816 6 41118495 to 41118506 11 + TSS region transcription start site region 55816
Tssr55817 6 41118818 to 41118851 33 + TSS region transcription start site region 55817
Trbv12-2 6 41118864 to 41119364 500 + gene segment T cell receptor beta, variable 12-2
Tssr55818 6 41121323 to 41121334 11 + TSS region transcription start site region 55818
Tssr55819 6 41121339 to 41121382 43 + TSS region transcription start site region 55819
Trbv13-2 6 41121396 to 41121832 436 + gene segment T cell receptor beta, variable 13-2
Tssr55820 6 41121549 to 41121566 17 + TSS region transcription start site region 55820
Tssr60553 6 41121833 to 41121849 16 - TSS region transcription start site region 60553
Tssr55821 6 41122004 to 41122013 9 + TSS region transcription start site region 55821
Tssr55822 6 41122030 to 41122042 12 + TSS region transcription start site region 55822
Trbv12-3 6 41127592 to 41128076 484 + pseudogenic gene segment T cell receptor beta, variable 12-3
Tssr55823 6 41130086 to 41130101 15 + TSS region transcription start site region 55823
Tssr55824 6 41130113 to 41130143 30 + TSS region transcription start site region 55824
Trbv13-3 6 41130147 to 41130585 438 + gene segment T cell receptor beta, variable 13-3
Tssr55825 6 41130155 to 41130171 16 + TSS region transcription start site region 55825
Tssr55826 6 41130265 to 41130292 27 + TSS region transcription start site region 55826
Tssr55827 6 41135091 to 41135100 9 + TSS region transcription start site region 55827
Tssr55828 6 41135131 to 41135165 34 + TSS region transcription start site region 55828
Trbv14 6 41135167 to 41135616 449 + gene segment T cell receptor beta, variable 14
Tssr55829 6 41137328 to 41137352 24 + TSS region transcription start site region 55829
Tssr55830 6 41137632 to 41137679 47 + TSS region transcription start site region 55830
Tssr55831 6 41141144 to 41141182 38 + TSS region transcription start site region 55831
Tssr55832 6 41141186 to 41141199 13 + TSS region transcription start site region 55832
Trbv15 6 41141211 to 41141658 447 + gene segment T cell receptor beta, variable 15
Tssr55833 6 41141282 to 41141293 11 + TSS region transcription start site region 55833
Tssr55834 6 41141297 to 41141307 10 + TSS region transcription start site region 55834
Tssr55835 6 41150317 to 41150322 5 + TSS region transcription start site region 55835
Tssr55836 6 41151150 to 41151161 11 + TSS region transcription start site region 55836
Tssr55837 6 41151167 to 41151194 27 + TSS region transcription start site region 55837
Tssr55838 6 41151198 to 41151203 5 + TSS region transcription start site region 55838
Tssr55839 6 41151644 to 41151649 5 + TSS region transcription start site region 55839
Tssr55840 6 41151675 to 41151685 10 + TSS region transcription start site region 55840
Tssr55841 6 41151702 to 41151735 33 + TSS region transcription start site region 55841
Tssr55842 6 41151739 to 41151760 21 + TSS region transcription start site region 55842
Trbv16 6 41151791 to 41152230 439 + gene segment T cell receptor beta, variable 16
Tssr55843 6 41163014 to 41163030 16 + TSS region transcription start site region 55843
Trbv17 6 41163092 to 41163556 464 + gene segment T cell receptor beta, variable 17
Tssr60554 6 41163553 to 41163576 23 - TSS region transcription start site region 60554
Trbv18 6 41175315 to 41175608 293 + pseudogenic gene segment T cell receptor beta variable 18
Tssr55844 6 41177441 to 41177468 27 + TSS region transcription start site region 55844
Tssr55845 6 41177504 to 41177516 12 + TSS region transcription start site region 55845
Tssr55846 6 41178162 to 41178166 4 + TSS region transcription start site region 55846
Tssr55847 6 41178308 to 41178317 9 + TSS region transcription start site region 55847
Tssr55848 6 41178320 to 41178335 15 + TSS region transcription start site region 55848
Tssr55849 6 41178380 to 41178401 21 + TSS region transcription start site region 55849
Tssr55850 6 41178408 to 41178453 45 + TSS region transcription start site region 55850
Tssr55851 6 41178483 to 41178506 23 + TSS region transcription start site region 55851
Trbv19 6 41178589 to 41179048 459 + gene segment T cell receptor beta, variable 19