Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:40992728-41122737

Filter by:
91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm2663 6 40995830 to 40999479 3649 - protein coding gene predicted gene 2663
Tssr60532 6 40999466 to 40999468 2 - TSS region transcription start site region 60532
Tssr60533 6 40999479 to 40999498 19 - TSS region transcription start site region 60533
Gm38015 6 41011181 to 41011368 187 - pseudogene predicted gene, 38015
Gm37878 6 41021243 to 41021884 641 - pseudogene predicted gene, 37878
Gm38294 6 41026265 to 41026645 380 + pseudogene predicted gene, 38294
2210010C04Rik 6 41030268 to 41035509 5241 - protein coding gene RIKEN cDNA 2210010C04 gene
Tssr60534 6 41030696 to 41030709 13 - TSS region transcription start site region 60534
Tssr60535 6 41030915 to 41030926 11 - TSS region transcription start site region 60535
Tssr60536 6 41030940 to 41030962 22 - TSS region transcription start site region 60536
Tssr60537 6 41031586 to 41031681 95 - TSS region transcription start site region 60537
Tssr55776 6 41031625 to 41031667 42 + TSS region transcription start site region 55776
Tssr60538 6 41031684 to 41031744 60 - TSS region transcription start site region 60538
Tssr60539 6 41032398 to 41032445 47 - TSS region transcription start site region 60539
Tssr1817 6 41032956 to 41032967 11 + TSS region transcription start site region 1817
Tssr60540 6 41032981 to 41032999 18 - TSS region transcription start site region 60540
Tssr60541 6 41033019 to 41033024 5 - TSS region transcription start site region 60541
Tssr60542 6 41033029 to 41033041 12 - TSS region transcription start site region 60542
Tssr60543 6 41033045 to 41033184 139 - TSS region transcription start site region 60543
Tssr55777 6 41033045 to 41033057 12 + TSS region transcription start site region 55777
Tssr55778 6 41033070 to 41033088 18 + TSS region transcription start site region 55778
Tssr55779 6 41033091 to 41033112 21 + TSS region transcription start site region 55779
Tssr55780 6 41033156 to 41033166 10 + TSS region transcription start site region 55780
Tssr60544 6 41033185 to 41033188 3 - TSS region transcription start site region 60544
Tssr60545 6 41033190 to 41033195 5 - TSS region transcription start site region 60545
Tssr60546 6 41034269 to 41034286 17 - TSS region transcription start site region 60546
Tssr60547 6 41034288 to 41034304 16 - TSS region transcription start site region 60547
Tssr60548 6 41034310 to 41034314 4 - TSS region transcription start site region 60548
Tssr60549 6 41034321 to 41034371 50 - TSS region transcription start site region 60549
Tssr60550 6 41034375 to 41034389 14 - TSS region transcription start site region 60550
Tssr60551 6 41034394 to 41034415 21 - TSS region transcription start site region 60551
Tssr60552 6 41035501 to 41035514 13 - TSS region transcription start site region 60552
Tssr55781 6 41046841 to 41046872 31 + TSS region transcription start site region 55781
Tssr55782 6 41046880 to 41046891 11 + TSS region transcription start site region 55782
Tssr55783 6 41047071 to 41047085 14 + TSS region transcription start site region 55783
Tssr55784 6 41047324 to 41047350 26 + TSS region transcription start site region 55784
Tssr55785 6 41047403 to 41047416 13 + TSS region transcription start site region 55785
Tssr55786 6 41047425 to 41047458 33 + TSS region transcription start site region 55786
Tssr55787 6 41047466 to 41047490 24 + TSS region transcription start site region 55787
Tssr55788 6 41047497 to 41047507 10 + TSS region transcription start site region 55788
Tssr55789 6 41047516 to 41047539 23 + TSS region transcription start site region 55789
Trbv2 6 41047556 to 41047995 439 + gene segment T cell receptor beta, variable 2
Tssr55790 6 41047568 to 41047578 10 + TSS region transcription start site region 55790
Tssr55791 6 41048139 to 41048153 14 + TSS region transcription start site region 55791
Tssr55792 6 41048252 to 41048261 9 + TSS region transcription start site region 55792
Tssr55793 6 41048283 to 41048299 16 + TSS region transcription start site region 55793
Tssr55794 6 41048327 to 41048347 20 + TSS region transcription start site region 55794
Tssr55795 6 41048352 to 41048353 1 + TSS region transcription start site region 55795
Trbv3 6 41048394 to 41048824 430 + gene segment T cell receptor beta, variable 3
Tssr55796 6 41055863 to 41055893 30 + TSS region transcription start site region 55796
5830405F06Rik 6 41055883 to 41063102 7219 + lincRNA gene RIKEN cDNA 5830405F06 gene
Tssr55797 6 41055901 to 41055927 26 + TSS region transcription start site region 55797
Tssr55798 6 41057728 to 41057737 9 + TSS region transcription start site region 55798
Tssr55799 6 41058394 to 41058417 23 + TSS region transcription start site region 55799
Tssr55800 6 41058552 to 41058564 12 + TSS region transcription start site region 55800
Tssr55801 6 41059142 to 41059164 22 + TSS region transcription start site region 55801
Tssr55802 6 41059338 to 41059391 53 + TSS region transcription start site region 55802
Tssr55803 6 41059400 to 41059430 30 + TSS region transcription start site region 55803
Tssr55804 6 41059433 to 41059455 22 + TSS region transcription start site region 55804
Trbv4 6 41059443 to 41059886 443 + gene segment T cell receptor beta, variable 10
Tssr55805 6 41062291 to 41062302 11 + TSS region transcription start site region 55805
Tssr55806 6 41062321 to 41062338 17 + TSS region transcription start site region 55806
Tssr55807 6 41062342 to 41062356 14 + TSS region transcription start site region 55807
Trbv5 6 41062359 to 41062803 444 + gene segment T cell receptor beta, variable 5
Trbv6 6 41066879 to 41067154 275 + pseudogenic gene segment T cell receptor beta variable 6
Trbv7 6 41080253 to 41080654 401 + pseudogenic gene segment T cell receptor beta variable 7
Gm49885 6 41081587 to 41091983 10396 + sense overlapping lncRNA gene predicted gene, 49885
Trbv8 6 41084821 to 41085105 284 + pseudogenic gene segment T cell receptor beta variable 8
Trbv9 6 41087999 to 41088288 289 + pseudogenic gene segment T cell receptor beta variable 9
Trbv10 6 41091940 to 41092228 288 + pseudogenic gene segment T cell receptor beta variable 10
Trbv11 6 41107044 to 41107303 259 + pseudogenic gene segment T cell receptor beta variable 11
Tssr55808 6 41113368 to 41113379 11 + TSS region transcription start site region 55808
Tssr55809 6 41113516 to 41113547 31 + TSS region transcription start site region 55809
Tssr55810 6 41113552 to 41113581 29 + TSS region transcription start site region 55810
Trbv12-1 6 41113567 to 41114067 500 + gene segment T cell receptor beta, variable 12-1
Tssr55811 6 41113582 to 41113593 11 + TSS region transcription start site region 55811
Tssr55812 6 41115998 to 41115999 1 + TSS region transcription start site region 55812
Tssr55813 6 41116000 to 41116025 25 + TSS region transcription start site region 55813
Trbv13-1 6 41116036 to 41116468 432 + gene segment T cell receptor beta, variable 13-1
Tssr55814 6 41116037 to 41116055 18 + TSS region transcription start site region 55814
Tssr55815 6 41118449 to 41118460 11 + TSS region transcription start site region 55815
Tssr55816 6 41118495 to 41118506 11 + TSS region transcription start site region 55816
Tssr55817 6 41118818 to 41118851 33 + TSS region transcription start site region 55817
Trbv12-2 6 41118864 to 41119364 500 + gene segment T cell receptor beta, variable 12-2
Tssr55818 6 41121323 to 41121334 11 + TSS region transcription start site region 55818
Tssr55819 6 41121339 to 41121382 43 + TSS region transcription start site region 55819
Trbv13-2 6 41121396 to 41121832 436 + gene segment T cell receptor beta, variable 13-2
Tssr55820 6 41121549 to 41121566 17 + TSS region transcription start site region 55820
Tssr60553 6 41121833 to 41121849 16 - TSS region transcription start site region 60553
Tssr55821 6 41122004 to 41122013 9 + TSS region transcription start site region 55821
Tssr55822 6 41122030 to 41122042 12 + TSS region transcription start site region 55822