Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:40948380-41408401

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187 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm4744 6 40948375 to 40951870 3495 - protein coding gene predicted gene 4744
Gm29588 6 40950224 to 40950521 297 + antisense lncRNA gene predicted gene 29588
Tssr60531 6 40954377 to 40954385 8 - TSS region transcription start site region 60531
Tssr55775 6 40964760 to 40964781 21 + TSS region transcription start site region 55775
1810009J06Rik 6 40964772 to 40968427 3655 + protein coding gene RIKEN cDNA 1810009J06 gene
Gm2663 6 40995830 to 40999479 3649 - protein coding gene predicted gene 2663
Tssr60532 6 40999466 to 40999468 2 - TSS region transcription start site region 60532
Tssr60533 6 40999479 to 40999498 19 - TSS region transcription start site region 60533
Gm38015 6 41011181 to 41011368 187 - pseudogene predicted gene, 38015
Gm37878 6 41021243 to 41021884 641 - pseudogene predicted gene, 37878
Gm38294 6 41026265 to 41026645 380 + pseudogene predicted gene, 38294
2210010C04Rik 6 41030268 to 41035509 5241 - protein coding gene RIKEN cDNA 2210010C04 gene
Tssr60534 6 41030696 to 41030709 13 - TSS region transcription start site region 60534
Tssr60535 6 41030915 to 41030926 11 - TSS region transcription start site region 60535
Tssr60536 6 41030940 to 41030962 22 - TSS region transcription start site region 60536
Tssr60537 6 41031586 to 41031681 95 - TSS region transcription start site region 60537
Tssr55776 6 41031625 to 41031667 42 + TSS region transcription start site region 55776
Tssr60538 6 41031684 to 41031744 60 - TSS region transcription start site region 60538
Tssr60539 6 41032398 to 41032445 47 - TSS region transcription start site region 60539
Tssr1817 6 41032956 to 41032967 11 + TSS region transcription start site region 1817
Tssr60540 6 41032981 to 41032999 18 - TSS region transcription start site region 60540
Tssr60541 6 41033019 to 41033024 5 - TSS region transcription start site region 60541
Tssr60542 6 41033029 to 41033041 12 - TSS region transcription start site region 60542
Tssr60543 6 41033045 to 41033184 139 - TSS region transcription start site region 60543
Tssr55777 6 41033045 to 41033057 12 + TSS region transcription start site region 55777
Tssr55778 6 41033070 to 41033088 18 + TSS region transcription start site region 55778
Tssr55779 6 41033091 to 41033112 21 + TSS region transcription start site region 55779
Tssr55780 6 41033156 to 41033166 10 + TSS region transcription start site region 55780
Tssr60544 6 41033185 to 41033188 3 - TSS region transcription start site region 60544
Tssr60545 6 41033190 to 41033195 5 - TSS region transcription start site region 60545
Tssr60546 6 41034269 to 41034286 17 - TSS region transcription start site region 60546
Tssr60547 6 41034288 to 41034304 16 - TSS region transcription start site region 60547
Tssr60548 6 41034310 to 41034314 4 - TSS region transcription start site region 60548
Tssr60549 6 41034321 to 41034371 50 - TSS region transcription start site region 60549
Tssr60550 6 41034375 to 41034389 14 - TSS region transcription start site region 60550
Tssr60551 6 41034394 to 41034415 21 - TSS region transcription start site region 60551
Tssr60552 6 41035501 to 41035514 13 - TSS region transcription start site region 60552
Tssr55781 6 41046841 to 41046872 31 + TSS region transcription start site region 55781
Tssr55782 6 41046880 to 41046891 11 + TSS region transcription start site region 55782
Tssr55783 6 41047071 to 41047085 14 + TSS region transcription start site region 55783
Tssr55784 6 41047324 to 41047350 26 + TSS region transcription start site region 55784
Tssr55785 6 41047403 to 41047416 13 + TSS region transcription start site region 55785
Tssr55786 6 41047425 to 41047458 33 + TSS region transcription start site region 55786
Tssr55787 6 41047466 to 41047490 24 + TSS region transcription start site region 55787
Tssr55788 6 41047497 to 41047507 10 + TSS region transcription start site region 55788
Tssr55789 6 41047516 to 41047539 23 + TSS region transcription start site region 55789
Trbv2 6 41047556 to 41047995 439 + gene segment T cell receptor beta, variable 2
Tssr55790 6 41047568 to 41047578 10 + TSS region transcription start site region 55790
Tssr55791 6 41048139 to 41048153 14 + TSS region transcription start site region 55791
Tssr55792 6 41048252 to 41048261 9 + TSS region transcription start site region 55792
Tssr55793 6 41048283 to 41048299 16 + TSS region transcription start site region 55793
Tssr55794 6 41048327 to 41048347 20 + TSS region transcription start site region 55794
Tssr55795 6 41048352 to 41048353 1 + TSS region transcription start site region 55795
Trbv3 6 41048394 to 41048824 430 + gene segment T cell receptor beta, variable 3
Tssr55796 6 41055863 to 41055893 30 + TSS region transcription start site region 55796
5830405F06Rik 6 41055883 to 41063102 7219 + lincRNA gene RIKEN cDNA 5830405F06 gene
Tssr55797 6 41055901 to 41055927 26 + TSS region transcription start site region 55797
Tssr55798 6 41057728 to 41057737 9 + TSS region transcription start site region 55798
Tssr55799 6 41058394 to 41058417 23 + TSS region transcription start site region 55799
Tssr55800 6 41058552 to 41058564 12 + TSS region transcription start site region 55800
Tssr55801 6 41059142 to 41059164 22 + TSS region transcription start site region 55801
Tssr55802 6 41059338 to 41059391 53 + TSS region transcription start site region 55802
Tssr55803 6 41059400 to 41059430 30 + TSS region transcription start site region 55803
Tssr55804 6 41059433 to 41059455 22 + TSS region transcription start site region 55804
Trbv4 6 41059443 to 41059886 443 + gene segment T cell receptor beta, variable 10
Tssr55805 6 41062291 to 41062302 11 + TSS region transcription start site region 55805
Tssr55806 6 41062321 to 41062338 17 + TSS region transcription start site region 55806
Tssr55807 6 41062342 to 41062356 14 + TSS region transcription start site region 55807
Trbv5 6 41062359 to 41062803 444 + gene segment T cell receptor beta, variable 5
Trbv6 6 41066879 to 41067154 275 + pseudogenic gene segment T cell receptor beta variable 6
Trbv7 6 41080253 to 41080654 401 + pseudogenic gene segment T cell receptor beta variable 7
Gm49885 6 41081587 to 41091983 10396 + sense overlapping lncRNA gene predicted gene, 49885
Trbv8 6 41084821 to 41085105 284 + pseudogenic gene segment T cell receptor beta variable 8
Trbv9 6 41087999 to 41088288 289 + pseudogenic gene segment T cell receptor beta variable 9
Trbv10 6 41091940 to 41092228 288 + pseudogenic gene segment T cell receptor beta variable 10
Trbv11 6 41107044 to 41107303 259 + pseudogenic gene segment T cell receptor beta variable 11
Tssr55808 6 41113368 to 41113379 11 + TSS region transcription start site region 55808
Tssr55809 6 41113516 to 41113547 31 + TSS region transcription start site region 55809
Tssr55810 6 41113552 to 41113581 29 + TSS region transcription start site region 55810
Trbv12-1 6 41113567 to 41114067 500 + gene segment T cell receptor beta, variable 12-1
Tssr55811 6 41113582 to 41113593 11 + TSS region transcription start site region 55811
Tssr55812 6 41115998 to 41115999 1 + TSS region transcription start site region 55812
Tssr55813 6 41116000 to 41116025 25 + TSS region transcription start site region 55813
Trbv13-1 6 41116036 to 41116468 432 + gene segment T cell receptor beta, variable 13-1
Tssr55814 6 41116037 to 41116055 18 + TSS region transcription start site region 55814
Tssr55815 6 41118449 to 41118460 11 + TSS region transcription start site region 55815
Tssr55816 6 41118495 to 41118506 11 + TSS region transcription start site region 55816
Tssr55817 6 41118818 to 41118851 33 + TSS region transcription start site region 55817
Trbv12-2 6 41118864 to 41119364 500 + gene segment T cell receptor beta, variable 12-2
Tssr55818 6 41121323 to 41121334 11 + TSS region transcription start site region 55818
Tssr55819 6 41121339 to 41121382 43 + TSS region transcription start site region 55819
Trbv13-2 6 41121396 to 41121832 436 + gene segment T cell receptor beta, variable 13-2
Tssr55820 6 41121549 to 41121566 17 + TSS region transcription start site region 55820
Tssr60553 6 41121833 to 41121849 16 - TSS region transcription start site region 60553
Tssr55821 6 41122004 to 41122013 9 + TSS region transcription start site region 55821
Tssr55822 6 41122030 to 41122042 12 + TSS region transcription start site region 55822
Trbv12-3 6 41127592 to 41128076 484 + pseudogenic gene segment T cell receptor beta, variable 12-3
Tssr55823 6 41130086 to 41130101 15 + TSS region transcription start site region 55823
Tssr55824 6 41130113 to 41130143 30 + TSS region transcription start site region 55824
Trbv13-3 6 41130147 to 41130585 438 + gene segment T cell receptor beta, variable 13-3
Tssr55825 6 41130155 to 41130171 16 + TSS region transcription start site region 55825
Tssr55826 6 41130265 to 41130292 27 + TSS region transcription start site region 55826
Tssr55827 6 41135091 to 41135100 9 + TSS region transcription start site region 55827
Tssr55828 6 41135131 to 41135165 34 + TSS region transcription start site region 55828
Trbv14 6 41135167 to 41135616 449 + gene segment T cell receptor beta, variable 14
Tssr55829 6 41137328 to 41137352 24 + TSS region transcription start site region 55829
Tssr55830 6 41137632 to 41137679 47 + TSS region transcription start site region 55830
Tssr55831 6 41141144 to 41141182 38 + TSS region transcription start site region 55831
Tssr55832 6 41141186 to 41141199 13 + TSS region transcription start site region 55832
Trbv15 6 41141211 to 41141658 447 + gene segment T cell receptor beta, variable 15
Tssr55833 6 41141282 to 41141293 11 + TSS region transcription start site region 55833
Tssr55834 6 41141297 to 41141307 10 + TSS region transcription start site region 55834
Tssr55835 6 41150317 to 41150322 5 + TSS region transcription start site region 55835
Tssr55836 6 41151150 to 41151161 11 + TSS region transcription start site region 55836
Tssr55837 6 41151167 to 41151194 27 + TSS region transcription start site region 55837
Tssr55838 6 41151198 to 41151203 5 + TSS region transcription start site region 55838
Tssr55839 6 41151644 to 41151649 5 + TSS region transcription start site region 55839
Tssr55840 6 41151675 to 41151685 10 + TSS region transcription start site region 55840
Tssr55841 6 41151702 to 41151735 33 + TSS region transcription start site region 55841
Tssr55842 6 41151739 to 41151760 21 + TSS region transcription start site region 55842
Trbv16 6 41151791 to 41152230 439 + gene segment T cell receptor beta, variable 16
Tssr55843 6 41163014 to 41163030 16 + TSS region transcription start site region 55843
Trbv17 6 41163092 to 41163556 464 + gene segment T cell receptor beta, variable 17
Tssr60554 6 41163553 to 41163576 23 - TSS region transcription start site region 60554
Trbv18 6 41175315 to 41175608 293 + pseudogenic gene segment T cell receptor beta variable 18
Tssr55844 6 41177441 to 41177468 27 + TSS region transcription start site region 55844
Tssr55845 6 41177504 to 41177516 12 + TSS region transcription start site region 55845
Tssr55846 6 41178162 to 41178166 4 + TSS region transcription start site region 55846
Tssr55847 6 41178308 to 41178317 9 + TSS region transcription start site region 55847
Tssr55848 6 41178320 to 41178335 15 + TSS region transcription start site region 55848
Tssr55849 6 41178380 to 41178401 21 + TSS region transcription start site region 55849
Tssr55850 6 41178408 to 41178453 45 + TSS region transcription start site region 55850
Tssr55851 6 41178483 to 41178506 23 + TSS region transcription start site region 55851
Trbv19 6 41178589 to 41179048 459 + gene segment T cell receptor beta, variable 19
Tssr55852 6 41178731 to 41178748 17 + TSS region transcription start site region 55852
Tssr55853 6 41178838 to 41178860 22 + TSS region transcription start site region 55853
Tssr55854 6 41178982 to 41178996 14 + TSS region transcription start site region 55854
D6Mit182 6 41182508 to 41182652 144 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 182
D6Mit182.1 6 41182633 to 41182761 128 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 182.1
Tssr55855 6 41187392 to 41187403 11 + TSS region transcription start site region 55855
Tssr55856 6 41188198 to 41188207 9 + TSS region transcription start site region 55856
Tssr55857 6 41188216 to 41188242 26 + TSS region transcription start site region 55857
Trbv20 6 41188273 to 41188977 704 + gene segment T cell receptor beta, variable 20
Tssr55858 6 41188312 to 41188334 22 + TSS region transcription start site region 55858
Tssr55859 6 41188395 to 41188406 11 + TSS region transcription start site region 55859
D6Mit311 6 41195002 to 41195118 116 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 311
Tssr60555 6 41197007 to 41197021 14 - TSS region transcription start site region 60555
Trbv21 6 41202587 to 41203044 457 + gene segment T cell receptor beta, variable 21
Trbv22 6 41212244 to 41212534 290 + pseudogenic gene segment T cell receptor beta variable 22
Tssr55860 6 41216050 to 41216069 19 + TSS region transcription start site region 55860
Trbv23 6 41216073 to 41216526 453 + gene segment T cell receptor beta, variable V23
Tssr1818 6 41216086 to 41216097 11 + TSS region transcription start site region 1818
Tssr55861 6 41218074 to 41218095 21 + TSS region transcription start site region 55861
Trbv24 6 41218091 to 41218557 466 + gene segment T cell receptor beta, variable 24
Tssr60556 6 41218550 to 41218578 28 - TSS region transcription start site region 60556
Tssr60557 6 41218596 to 41218608 12 - TSS region transcription start site region 60557
Trbv25 6 41221931 to 41222203 272 + pseudogenic gene segment T cell receptor beta variable 25
Tssr55862 6 41227496 to 41227530 34 + TSS region transcription start site region 55862
Trbv26 6 41227525 to 41227913 388 + gene segment T cell receptor beta, variable 26
Tssr55863 6 41227536 to 41227549 13 + TSS region transcription start site region 55863
Gm2719 6 41253328 to 41253771 443 + pseudogene predicted pseudogene 2719
Trbv27 6 41258303 to 41258579 276 + pseudogenic gene segment T cell receptor beta variable 27
Trbv28 6 41266887 to 41267150 263 + pseudogenic gene segment T cell receptor beta variable 28
Tssr55864 6 41271377 to 41271411 34 + TSS region transcription start site region 55864
Trbv29 6 41271403 to 41271881 478 + pseudogenic gene segment T cell receptor beta, variable 29
Tssr55865 6 41271421 to 41271424 3 + TSS region transcription start site region 55865
Tssr55866 6 41281267 to 41281304 37 + TSS region transcription start site region 55866
Trbv30 6 41281376 to 41281990 614 + gene segment T cell receptor beta, variable 30
Tssr55867 6 41302265 to 41302279 14 + TSS region transcription start site region 55867
Try4 6 41302272 to 41305533 3261 + protein coding gene trypsin 4
Gm18964 6 41306203 to 41306747 544 - pseudogene predicted gene, 18964
Try5 6 41311232 to 41314710 3478 - protein coding gene trypsin 5
Tssr60558 6 41311305 to 41311317 12 - TSS region transcription start site region 60558
Tssr1819 6 41312277 to 41312297 20 + TSS region transcription start site region 1819
Tssr1820 6 41312310 to 41312334 24 + TSS region transcription start site region 1820
Tssr60559 6 41313445 to 41313468 23 - TSS region transcription start site region 60559
Tssr60560 6 41314700 to 41314715 15 - TSS region transcription start site region 60560
Tssr55868 6 41339781 to 41339788 7 + TSS region transcription start site region 55868
Tssr55869 6 41339800 to 41339811 11 + TSS region transcription start site region 55869
Tssr55870 6 41339818 to 41339851 33 + TSS region transcription start site region 55870
Try10 6 41354105 to 41357914 3809 + protein coding gene trypsin 10
Tssr55871 6 41354170 to 41354185 15 + TSS region transcription start site region 55871
Prss3 6 41373759 to 41377613 3854 - protein coding gene protease, serine 3
Tssr60561 6 41377604 to 41377618 14 - TSS region transcription start site region 60561
Gm5771 6 41392356 to 41397230 4874 + protein coding gene predicted gene 5771
Tssr55872 6 41392371 to 41392380 9 + TSS region transcription start site region 55872
Gm38306 6 41406915 to 41407267 352 + pseudogene predicted gene, 38306