Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:39878298-40534259

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37 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tmem178b 6 39873271 to 40255150 381879 + protein coding gene transmembrane protein 178B
Tssr55740 6 39879617 to 39879622 5 + TSS region transcription start site region 55740
D6Mit161.1 6 39929287 to 39929422 135 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 161.1
D6Mit161 6 39929398 to 39929531 133 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 161
D6Mit239 6 39929402 to 39929526 124 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 239
D6Mit161.2 6 39929498 to 39929617 119 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 161.2
Gm37995 6 40026894 to 40028607 1713 + unclassified gene predicted gene, 37995
Tssr55741 6 40038280 to 40038285 5 + TSS region transcription start site region 55741
Tssr60511 6 40049669 to 40049717 48 - TSS region transcription start site region 60511
Gm37673 6 40098722 to 40101172 2450 + unclassified gene predicted gene, 37673
Gm26638 6 40118779 to 40129477 10698 + sense intronic lncRNA gene predicted gene, 26638
Gm26807 6 40203298 to 40209259 5961 - antisense lncRNA gene predicted gene, 26807
Tssr55742 6 40221811 to 40221823 12 + TSS region transcription start site region 55742
Gm37003 6 40226219 to 40229045 2826 + unclassified gene predicted gene, 37003
Agk 6 40325172 to 40396762 71590 + protein coding gene acylglycerol kinase
Cpgi17330 6 40325286 to 40325831 545 CpG island CpG island 17330
Tssr55743 6 40325471 to 40325501 30 + TSS region transcription start site region 55743
Tssr55744 6 40359905 to 40359940 35 + TSS region transcription start site region 55744
E330009J07Rik 6 40401375 to 40436135 34760 - protein coding gene RIKEN cDNA E330009J07 gene
Tssr60512 6 40401771 to 40401775 4 - TSS region transcription start site region 60512
Tssr60513 6 40431578 to 40431581 3 - TSS region transcription start site region 60513
Tssr60514 6 40435150 to 40435157 7 - TSS region transcription start site region 60514
Cpgi17331 6 40435155 to 40436464 1309 CpG island CpG island 17331
Tssr60515 6 40436078 to 40436088 10 - TSS region transcription start site region 60515
Tssr60516 6 40436089 to 40436101 12 - TSS region transcription start site region 60516
Tssr60517 6 40436104 to 40436151 47 - TSS region transcription start site region 60517
Wee2 6 40439088 to 40466813 27725 + protein coding gene WEE1 homolog 2 (S. pombe)
A930033M24Rik 6 40470542 to 40471279 737 unclassified gene RIKEN cDNA A930033M24 gene
Cpgi17332 6 40471214 to 40471831 617 CpG island CpG island 17332
Tssr55745 6 40471361 to 40471511 150 + TSS region transcription start site region 55745
Ssbp1 6 40471415 to 40481823 10408 + protein coding gene single-stranded DNA binding protein 1
Tssr55746 6 40480308 to 40480312 4 + TSS region transcription start site region 55746
Tas2r137 6 40491238 to 40492239 1001 + protein coding gene taste receptor, type 2, member 137
Tas2r108 6 40493592 to 40494485 893 + protein coding gene taste receptor, type 2, member 108
Prss37 6 40514824 to 40519508 4684 - protein coding gene protease, serine 37
Tssr60518 6 40519469 to 40519490 21 - TSS region transcription start site region 60518
Gm43295 6 40522804 to 40523215 411 - pseudogene predicted gene 43295