Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:39841375-40996135

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107 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm7556 6 39843212 to 39844295 1083 - pseudogene predicted gene 7556
Tssr60510 6 39844357 to 39844401 44 - TSS region transcription start site region 60510
Cpgi17329 6 39871376 to 39873623 2247 CpG island CpG island 17329
Tssr55734 6 39871433 to 39871460 27 + TSS region transcription start site region 55734
Tssr55735 6 39871461 to 39871506 45 + TSS region transcription start site region 55735
Tssr55736 6 39871509 to 39871520 11 + TSS region transcription start site region 55736
Gm26833 6 39871532 to 39871971 439 - antisense lncRNA gene predicted gene, 26833
Tssr55737 6 39871551 to 39871560 9 + TSS region transcription start site region 55737
Tssr55738 6 39872208 to 39872219 11 + TSS region transcription start site region 55738
Tmem178b 6 39873271 to 40255150 381879 + protein coding gene transmembrane protein 178B
Tssr55739 6 39876864 to 39876867 3 + TSS region transcription start site region 55739
Tssr55740 6 39879617 to 39879622 5 + TSS region transcription start site region 55740
D6Mit161.1 6 39929287 to 39929422 135 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 161.1
D6Mit161 6 39929398 to 39929531 133 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 161
D6Mit239 6 39929402 to 39929526 124 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 239
D6Mit161.2 6 39929498 to 39929617 119 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 161.2
Gm37995 6 40026894 to 40028607 1713 + unclassified gene predicted gene, 37995
Tssr55741 6 40038280 to 40038285 5 + TSS region transcription start site region 55741
Tssr60511 6 40049669 to 40049717 48 - TSS region transcription start site region 60511
Gm37673 6 40098722 to 40101172 2450 + unclassified gene predicted gene, 37673
Gm26638 6 40118779 to 40129477 10698 + sense intronic lncRNA gene predicted gene, 26638
Gm26807 6 40203298 to 40209259 5961 - antisense lncRNA gene predicted gene, 26807
Tssr55742 6 40221811 to 40221823 12 + TSS region transcription start site region 55742
Gm37003 6 40226219 to 40229045 2826 + unclassified gene predicted gene, 37003
Agk 6 40325172 to 40396762 71590 + protein coding gene acylglycerol kinase
Cpgi17330 6 40325286 to 40325831 545 CpG island CpG island 17330
Tssr55743 6 40325471 to 40325501 30 + TSS region transcription start site region 55743
Tssr55744 6 40359905 to 40359940 35 + TSS region transcription start site region 55744
E330009J07Rik 6 40401375 to 40436135 34760 - protein coding gene RIKEN cDNA E330009J07 gene
Tssr60512 6 40401771 to 40401775 4 - TSS region transcription start site region 60512
Tssr60513 6 40431578 to 40431581 3 - TSS region transcription start site region 60513
Tssr60514 6 40435150 to 40435157 7 - TSS region transcription start site region 60514
Cpgi17331 6 40435155 to 40436464 1309 CpG island CpG island 17331
Tssr60515 6 40436078 to 40436088 10 - TSS region transcription start site region 60515
Tssr60516 6 40436089 to 40436101 12 - TSS region transcription start site region 60516
Tssr60517 6 40436104 to 40436151 47 - TSS region transcription start site region 60517
Wee2 6 40439088 to 40466813 27725 + protein coding gene WEE1 homolog 2 (S. pombe)
A930033M24Rik 6 40470542 to 40471279 737 unclassified gene RIKEN cDNA A930033M24 gene
Cpgi17332 6 40471214 to 40471831 617 CpG island CpG island 17332
Tssr55745 6 40471361 to 40471511 150 + TSS region transcription start site region 55745
Ssbp1 6 40471415 to 40481823 10408 + protein coding gene single-stranded DNA binding protein 1
Tssr55746 6 40480308 to 40480312 4 + TSS region transcription start site region 55746
Tas2r137 6 40491238 to 40492239 1001 + protein coding gene taste receptor, type 2, member 137
Tas2r108 6 40493592 to 40494485 893 + protein coding gene taste receptor, type 2, member 108
Prss37 6 40514824 to 40519508 4684 - protein coding gene protease, serine 37
Tssr60518 6 40519469 to 40519490 21 - TSS region transcription start site region 60518
Gm43295 6 40522804 to 40523215 411 - pseudogene predicted gene 43295
Olfr461 6 40544036 to 40544977 941 - protein coding gene olfactory receptor 461
Olfr460 6 40569152 to 40572504 3352 + protein coding gene olfactory receptor 460
Clec5a 6 40574898 to 40585805 10907 - protein coding gene C-type lectin domain family 5, member a
Tssr60519 6 40577420 to 40577434 14 - TSS region transcription start site region 60519
Tssr60520 6 40577733 to 40577745 12 - TSS region transcription start site region 60520
Tssr60521 6 40585756 to 40585763 7 - TSS region transcription start site region 60521
Tssr60522 6 40585783 to 40585811 28 - TSS region transcription start site region 60522
Tssr60523 6 40585817 to 40585828 11 - TSS region transcription start site region 60523
Tssr60524 6 40585831 to 40585847 16 - TSS region transcription start site region 60524
Tas2r138 6 40612315 to 40613310 995 - protein coding gene taste receptor, type 2, member 138
D6Mit382 6 40627019 to 40627162 143 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology-382
Tssr55747 6 40628570 to 40628579 9 + TSS region transcription start site region 55747
Tssr55748 6 40628588 to 40628595 7 + TSS region transcription start site region 55748
Tssr55749 6 40628601 to 40628610 9 + TSS region transcription start site region 55749
Tssr55750 6 40628613 to 40628627 14 + TSS region transcription start site region 55750
Tssr55751 6 40628824 to 40628839 15 + TSS region transcription start site region 55751
Mgam 6 40628831 to 40769123 140292 + protein coding gene maltase-glucoamylase
Tssr55752 6 40634807 to 40634864 57 + TSS region transcription start site region 55752
Tssr55753 6 40635055 to 40635067 12 + TSS region transcription start site region 55753
Tssr55754 6 40635072 to 40635111 39 + TSS region transcription start site region 55754
Tssr55755 6 40642981 to 40643003 22 + TSS region transcription start site region 55755
Tssr55756 6 40643527 to 40643529 2 + TSS region transcription start site region 55756
Tssr55757 6 40656409 to 40656420 11 + TSS region transcription start site region 55757
Tssr55758 6 40735370 to 40735373 3 + TSS region transcription start site region 55758
Tssr55759 6 40740419 to 40740422 3 + TSS region transcription start site region 55759
Tssr55760 6 40765963 to 40765979 16 + TSS region transcription start site region 55760
Tssr55761 6 40768412 to 40768422 10 + TSS region transcription start site region 55761
Tssr55762 6 40768587 to 40768607 20 + TSS region transcription start site region 55762
Tssr55763 6 40768710 to 40768726 16 + TSS region transcription start site region 55763
Tssr55764 6 40768860 to 40768869 9 + TSS region transcription start site region 55764
Tssr55765 6 40769030 to 40769071 41 + TSS region transcription start site region 55765
Tssr55766 6 40778683 to 40778733 50 + TSS region transcription start site region 55766
Tssr55767 6 40778814 to 40778817 3 + TSS region transcription start site region 55767
Mgam2-ps 6 40797824 to 40855590 57766 + pseudogene maltase-glucoamylase 2, pseudogene
Tssr55768 6 40812575 to 40812607 32 + TSS region transcription start site region 55768
Moxd2 6 40878794 to 40887494 8700 - protein coding gene monooxygenase, DBH-like 2
Gm38276 6 40889528 to 40890870 1342 - unclassified gene predicted gene, 38276
Tssr55769 6 40891196 to 40891207 11 + TSS region transcription start site region 55769
Tssr55770 6 40891221 to 40891242 21 + TSS region transcription start site region 55770
Trbv4c2 6 40891296 to 71379171 30487875 QTL T cell receptor beta variable 4, control 2
Tcrb 6 40891296 to 41558371 667075 + complex/cluster/region T cell receptor beta chain
Trbv1 6 40891296 to 40891885 589 + gene segment T cell receptor beta, variable 1
Tssr55771 6 40891350 to 40891359 9 + TSS region transcription start site region 55771
Tssr55772 6 40891403 to 40891427 24 + TSS region transcription start site region 55772
Tssr55773 6 40891431 to 40891451 20 + TSS region transcription start site region 55773
Tssr55774 6 40891676 to 40891692 16 + TSS region transcription start site region 55774
Prss58 6 40895270 to 40900387 5117 - protein coding gene protease, serine 58
Tssr60525 6 40900368 to 40900394 26 - TSS region transcription start site region 60525
1700074P13Rik 6 40920437 to 40940557 20120 - protein coding gene RIKEN cDNA 1700074P13 gene
Tssr60526 6 40929712 to 40929716 4 - TSS region transcription start site region 60526
Tssr60527 6 40929731 to 40929745 14 - TSS region transcription start site region 60527
Tssr60528 6 40940527 to 40940554 27 - TSS region transcription start site region 60528
Tssr60529 6 40940932 to 40940946 14 - TSS region transcription start site region 60529
Tssr60530 6 40940970 to 40940977 7 - TSS region transcription start site region 60530
Gm4744 6 40948375 to 40951870 3495 - protein coding gene predicted gene 4744
Gm29588 6 40950224 to 40950521 297 + antisense lncRNA gene predicted gene 29588
Tssr60531 6 40954377 to 40954385 8 - TSS region transcription start site region 60531
Tssr55775 6 40964760 to 40964781 21 + TSS region transcription start site region 55775
1810009J06Rik 6 40964772 to 40968427 3655 + protein coding gene RIKEN cDNA 1810009J06 gene
Gm2663 6 40995830 to 40999479 3649 - protein coding gene predicted gene 2663