Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:39716232-42909710

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701 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Braf 6 39603237 to 39725463 122226 - protein coding gene Braf transforming gene
Cpgi17327 6 39724613 to 39725717 1104 CpG island CpG island 17327
Tssr60504 6 39725293 to 39725357 64 - TSS region transcription start site region 60504
Tssr60505 6 39725419 to 39725429 10 - TSS region transcription start site region 60505
Tssr60506 6 39725448 to 39725478 30 - TSS region transcription start site region 60506
Tssr60507 6 39725487 to 39725504 17 - TSS region transcription start site region 60507
Mrps33 6 39801804 to 39810936 9132 - protein coding gene mitochondrial ribosomal protein S33
5730402E23Rik 6 39810180 to 39810647 467 unclassified gene RIKEN cDNA 5730402E23 gene
Cpgi17328 6 39810511 to 39811215 704 CpG island CpG island 17328
Tssr60508 6 39810865 to 39810876 11 - TSS region transcription start site region 60508
Tssr60509 6 39810881 to 39810905 24 - TSS region transcription start site region 60509
Gm7554 6 39828200 to 39828773 573 - pseudogene predicted gene 7554
Gm7556 6 39843212 to 39844295 1083 - pseudogene predicted gene 7556
Tssr60510 6 39844357 to 39844401 44 - TSS region transcription start site region 60510
Cpgi17329 6 39871376 to 39873623 2247 CpG island CpG island 17329
Tssr55734 6 39871433 to 39871460 27 + TSS region transcription start site region 55734
Tssr55735 6 39871461 to 39871506 45 + TSS region transcription start site region 55735
Tssr55736 6 39871509 to 39871520 11 + TSS region transcription start site region 55736
Gm26833 6 39871532 to 39871971 439 - antisense lncRNA gene predicted gene, 26833
Tssr55737 6 39871551 to 39871560 9 + TSS region transcription start site region 55737
Tssr55738 6 39872208 to 39872219 11 + TSS region transcription start site region 55738
Tmem178b 6 39873271 to 40255150 381879 + protein coding gene transmembrane protein 178B
Tssr55739 6 39876864 to 39876867 3 + TSS region transcription start site region 55739
Tssr55740 6 39879617 to 39879622 5 + TSS region transcription start site region 55740
D6Mit161.1 6 39929287 to 39929422 135 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 161.1
D6Mit161 6 39929398 to 39929531 133 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 161
D6Mit239 6 39929402 to 39929526 124 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 239
D6Mit161.2 6 39929498 to 39929617 119 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 161.2
Gm37995 6 40026894 to 40028607 1713 + unclassified gene predicted gene, 37995
Tssr55741 6 40038280 to 40038285 5 + TSS region transcription start site region 55741
Tssr60511 6 40049669 to 40049717 48 - TSS region transcription start site region 60511
Gm37673 6 40098722 to 40101172 2450 + unclassified gene predicted gene, 37673
Gm26638 6 40118779 to 40129477 10698 + sense intronic lncRNA gene predicted gene, 26638
Gm26807 6 40203298 to 40209259 5961 - antisense lncRNA gene predicted gene, 26807
Tssr55742 6 40221811 to 40221823 12 + TSS region transcription start site region 55742
Gm37003 6 40226219 to 40229045 2826 + unclassified gene predicted gene, 37003
Agk 6 40325172 to 40396762 71590 + protein coding gene acylglycerol kinase
Cpgi17330 6 40325286 to 40325831 545 CpG island CpG island 17330
Tssr55743 6 40325471 to 40325501 30 + TSS region transcription start site region 55743
Tssr55744 6 40359905 to 40359940 35 + TSS region transcription start site region 55744
E330009J07Rik 6 40401375 to 40436135 34760 - protein coding gene RIKEN cDNA E330009J07 gene
Tssr60512 6 40401771 to 40401775 4 - TSS region transcription start site region 60512
Tssr60513 6 40431578 to 40431581 3 - TSS region transcription start site region 60513
Tssr60514 6 40435150 to 40435157 7 - TSS region transcription start site region 60514
Cpgi17331 6 40435155 to 40436464 1309 CpG island CpG island 17331
Tssr60515 6 40436078 to 40436088 10 - TSS region transcription start site region 60515
Tssr60516 6 40436089 to 40436101 12 - TSS region transcription start site region 60516
Tssr60517 6 40436104 to 40436151 47 - TSS region transcription start site region 60517
Wee2 6 40439088 to 40466813 27725 + protein coding gene WEE1 homolog 2 (S. pombe)
A930033M24Rik 6 40470542 to 40471279 737 unclassified gene RIKEN cDNA A930033M24 gene
Cpgi17332 6 40471214 to 40471831 617 CpG island CpG island 17332
Tssr55745 6 40471361 to 40471511 150 + TSS region transcription start site region 55745
Ssbp1 6 40471415 to 40481823 10408 + protein coding gene single-stranded DNA binding protein 1
Tssr55746 6 40480308 to 40480312 4 + TSS region transcription start site region 55746
Tas2r137 6 40491238 to 40492239 1001 + protein coding gene taste receptor, type 2, member 137
Tas2r108 6 40493592 to 40494485 893 + protein coding gene taste receptor, type 2, member 108
Prss37 6 40514824 to 40519508 4684 - protein coding gene protease, serine 37
Tssr60518 6 40519469 to 40519490 21 - TSS region transcription start site region 60518
Gm43295 6 40522804 to 40523215 411 - pseudogene predicted gene 43295
Olfr461 6 40544036 to 40544977 941 - protein coding gene olfactory receptor 461
Olfr460 6 40569152 to 40572504 3352 + protein coding gene olfactory receptor 460
Clec5a 6 40574898 to 40585805 10907 - protein coding gene C-type lectin domain family 5, member a
Tssr60519 6 40577420 to 40577434 14 - TSS region transcription start site region 60519
Tssr60520 6 40577733 to 40577745 12 - TSS region transcription start site region 60520
Tssr60521 6 40585756 to 40585763 7 - TSS region transcription start site region 60521
Tssr60522 6 40585783 to 40585811 28 - TSS region transcription start site region 60522
Tssr60523 6 40585817 to 40585828 11 - TSS region transcription start site region 60523
Tssr60524 6 40585831 to 40585847 16 - TSS region transcription start site region 60524
Tas2r138 6 40612315 to 40613310 995 - protein coding gene taste receptor, type 2, member 138
D6Mit382 6 40627019 to 40627162 143 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology-382
Tssr55747 6 40628570 to 40628579 9 + TSS region transcription start site region 55747
Tssr55748 6 40628588 to 40628595 7 + TSS region transcription start site region 55748
Tssr55749 6 40628601 to 40628610 9 + TSS region transcription start site region 55749
Tssr55750 6 40628613 to 40628627 14 + TSS region transcription start site region 55750
Tssr55751 6 40628824 to 40628839 15 + TSS region transcription start site region 55751
Mgam 6 40628831 to 40769123 140292 + protein coding gene maltase-glucoamylase
Tssr55752 6 40634807 to 40634864 57 + TSS region transcription start site region 55752
Tssr55753 6 40635055 to 40635067 12 + TSS region transcription start site region 55753
Tssr55754 6 40635072 to 40635111 39 + TSS region transcription start site region 55754
Tssr55755 6 40642981 to 40643003 22 + TSS region transcription start site region 55755
Tssr55756 6 40643527 to 40643529 2 + TSS region transcription start site region 55756
Tssr55757 6 40656409 to 40656420 11 + TSS region transcription start site region 55757
Tssr55758 6 40735370 to 40735373 3 + TSS region transcription start site region 55758
Tssr55759 6 40740419 to 40740422 3 + TSS region transcription start site region 55759
Tssr55760 6 40765963 to 40765979 16 + TSS region transcription start site region 55760
Tssr55761 6 40768412 to 40768422 10 + TSS region transcription start site region 55761
Tssr55762 6 40768587 to 40768607 20 + TSS region transcription start site region 55762
Tssr55763 6 40768710 to 40768726 16 + TSS region transcription start site region 55763
Tssr55764 6 40768860 to 40768869 9 + TSS region transcription start site region 55764
Tssr55765 6 40769030 to 40769071 41 + TSS region transcription start site region 55765
Tssr55766 6 40778683 to 40778733 50 + TSS region transcription start site region 55766
Tssr55767 6 40778814 to 40778817 3 + TSS region transcription start site region 55767
Mgam2-ps 6 40797824 to 40855590 57766 + pseudogene maltase-glucoamylase 2, pseudogene
Tssr55768 6 40812575 to 40812607 32 + TSS region transcription start site region 55768
Moxd2 6 40878794 to 40887494 8700 - protein coding gene monooxygenase, DBH-like 2
Gm38276 6 40889528 to 40890870 1342 - unclassified gene predicted gene, 38276
Tssr55769 6 40891196 to 40891207 11 + TSS region transcription start site region 55769
Tssr55770 6 40891221 to 40891242 21 + TSS region transcription start site region 55770
Tcrb 6 40891296 to 41558371 667075 + complex/cluster/region T cell receptor beta chain
Trbv4c2 6 40891296 to 71379171 30487875 QTL T cell receptor beta variable 4, control 2
Trbv1 6 40891296 to 40891885 589 + gene segment T cell receptor beta, variable 1
Tssr55771 6 40891350 to 40891359 9 + TSS region transcription start site region 55771
Tssr55772 6 40891403 to 40891427 24 + TSS region transcription start site region 55772
Tssr55773 6 40891431 to 40891451 20 + TSS region transcription start site region 55773
Tssr55774 6 40891676 to 40891692 16 + TSS region transcription start site region 55774
Prss58 6 40895270 to 40900387 5117 - protein coding gene protease, serine 58
Tssr60525 6 40900368 to 40900394 26 - TSS region transcription start site region 60525
1700074P13Rik 6 40920437 to 40940557 20120 - protein coding gene RIKEN cDNA 1700074P13 gene
Tssr60526 6 40929712 to 40929716 4 - TSS region transcription start site region 60526
Tssr60527 6 40929731 to 40929745 14 - TSS region transcription start site region 60527
Tssr60528 6 40940527 to 40940554 27 - TSS region transcription start site region 60528
Tssr60529 6 40940932 to 40940946 14 - TSS region transcription start site region 60529
Tssr60530 6 40940970 to 40940977 7 - TSS region transcription start site region 60530
Gm4744 6 40948375 to 40951870 3495 - protein coding gene predicted gene 4744
Gm29588 6 40950224 to 40950521 297 + antisense lncRNA gene predicted gene 29588
Tssr60531 6 40954377 to 40954385 8 - TSS region transcription start site region 60531
Tssr55775 6 40964760 to 40964781 21 + TSS region transcription start site region 55775
1810009J06Rik 6 40964772 to 40968427 3655 + protein coding gene RIKEN cDNA 1810009J06 gene
Gm2663 6 40995830 to 40999479 3649 - protein coding gene predicted gene 2663
Tssr60532 6 40999466 to 40999468 2 - TSS region transcription start site region 60532
Tssr60533 6 40999479 to 40999498 19 - TSS region transcription start site region 60533
Gm38015 6 41011181 to 41011368 187 - pseudogene predicted gene, 38015
Gm37878 6 41021243 to 41021884 641 - pseudogene predicted gene, 37878
Gm38294 6 41026265 to 41026645 380 + pseudogene predicted gene, 38294
2210010C04Rik 6 41030268 to 41035509 5241 - protein coding gene RIKEN cDNA 2210010C04 gene
Tssr60534 6 41030696 to 41030709 13 - TSS region transcription start site region 60534
Tssr60535 6 41030915 to 41030926 11 - TSS region transcription start site region 60535
Tssr60536 6 41030940 to 41030962 22 - TSS region transcription start site region 60536
Tssr60537 6 41031586 to 41031681 95 - TSS region transcription start site region 60537
Tssr55776 6 41031625 to 41031667 42 + TSS region transcription start site region 55776
Tssr60538 6 41031684 to 41031744 60 - TSS region transcription start site region 60538
Tssr60539 6 41032398 to 41032445 47 - TSS region transcription start site region 60539
Tssr1817 6 41032956 to 41032967 11 + TSS region transcription start site region 1817
Tssr60540 6 41032981 to 41032999 18 - TSS region transcription start site region 60540
Tssr60541 6 41033019 to 41033024 5 - TSS region transcription start site region 60541
Tssr60542 6 41033029 to 41033041 12 - TSS region transcription start site region 60542
Tssr55777 6 41033045 to 41033057 12 + TSS region transcription start site region 55777
Tssr60543 6 41033045 to 41033184 139 - TSS region transcription start site region 60543
Tssr55778 6 41033070 to 41033088 18 + TSS region transcription start site region 55778
Tssr55779 6 41033091 to 41033112 21 + TSS region transcription start site region 55779
Tssr55780 6 41033156 to 41033166 10 + TSS region transcription start site region 55780
Tssr60544 6 41033185 to 41033188 3 - TSS region transcription start site region 60544
Tssr60545 6 41033190 to 41033195 5 - TSS region transcription start site region 60545
Tssr60546 6 41034269 to 41034286 17 - TSS region transcription start site region 60546
Tssr60547 6 41034288 to 41034304 16 - TSS region transcription start site region 60547
Tssr60548 6 41034310 to 41034314 4 - TSS region transcription start site region 60548
Tssr60549 6 41034321 to 41034371 50 - TSS region transcription start site region 60549
Tssr60550 6 41034375 to 41034389 14 - TSS region transcription start site region 60550
Tssr60551 6 41034394 to 41034415 21 - TSS region transcription start site region 60551
Tssr60552 6 41035501 to 41035514 13 - TSS region transcription start site region 60552
Tssr55781 6 41046841 to 41046872 31 + TSS region transcription start site region 55781
Tssr55782 6 41046880 to 41046891 11 + TSS region transcription start site region 55782
Tssr55783 6 41047071 to 41047085 14 + TSS region transcription start site region 55783
Tssr55784 6 41047324 to 41047350 26 + TSS region transcription start site region 55784
Tssr55785 6 41047403 to 41047416 13 + TSS region transcription start site region 55785
Tssr55786 6 41047425 to 41047458 33 + TSS region transcription start site region 55786
Tssr55787 6 41047466 to 41047490 24 + TSS region transcription start site region 55787
Tssr55788 6 41047497 to 41047507 10 + TSS region transcription start site region 55788
Tssr55789 6 41047516 to 41047539 23 + TSS region transcription start site region 55789
Trbv2 6 41047556 to 41047995 439 + gene segment T cell receptor beta, variable 2
Tssr55790 6 41047568 to 41047578 10 + TSS region transcription start site region 55790
Tssr55791 6 41048139 to 41048153 14 + TSS region transcription start site region 55791
Tssr55792 6 41048252 to 41048261 9 + TSS region transcription start site region 55792
Tssr55793 6 41048283 to 41048299 16 + TSS region transcription start site region 55793
Tssr55794 6 41048327 to 41048347 20 + TSS region transcription start site region 55794
Tssr55795 6 41048352 to 41048353 1 + TSS region transcription start site region 55795
Trbv3 6 41048394 to 41048824 430 + gene segment T cell receptor beta, variable 3
Tssr55796 6 41055863 to 41055893 30 + TSS region transcription start site region 55796
5830405F06Rik 6 41055883 to 41063102 7219 + lincRNA gene RIKEN cDNA 5830405F06 gene
Tssr55797 6 41055901 to 41055927 26 + TSS region transcription start site region 55797
Tssr55798 6 41057728 to 41057737 9 + TSS region transcription start site region 55798
Tssr55799 6 41058394 to 41058417 23 + TSS region transcription start site region 55799
Tssr55800 6 41058552 to 41058564 12 + TSS region transcription start site region 55800
Tssr55801 6 41059142 to 41059164 22 + TSS region transcription start site region 55801
Tssr55802 6 41059338 to 41059391 53 + TSS region transcription start site region 55802
Tssr55803 6 41059400 to 41059430 30 + TSS region transcription start site region 55803
Tssr55804 6 41059433 to 41059455 22 + TSS region transcription start site region 55804
Trbv4 6 41059443 to 41059886 443 + gene segment T cell receptor beta, variable 10
Tssr55805 6 41062291 to 41062302 11 + TSS region transcription start site region 55805
Tssr55806 6 41062321 to 41062338 17 + TSS region transcription start site region 55806
Tssr55807 6 41062342 to 41062356 14 + TSS region transcription start site region 55807
Trbv5 6 41062359 to 41062803 444 + gene segment T cell receptor beta, variable 5
Trbv6 6 41066879 to 41067154 275 + pseudogenic gene segment T cell receptor beta variable 6
Trbv7 6 41080253 to 41080654 401 + pseudogenic gene segment T cell receptor beta variable 7
Gm49885 6 41081587 to 41091983 10396 + sense overlapping lncRNA gene predicted gene, 49885
Trbv8 6 41084821 to 41085105 284 + pseudogenic gene segment T cell receptor beta variable 8
Trbv9 6 41087999 to 41088288 289 + pseudogenic gene segment T cell receptor beta variable 9
Trbv10 6 41091940 to 41092228 288 + pseudogenic gene segment T cell receptor beta variable 10
Trbv11 6 41107044 to 41107303 259 + pseudogenic gene segment T cell receptor beta variable 11
Tssr55808 6 41113368 to 41113379 11 + TSS region transcription start site region 55808
Tssr55809 6 41113516 to 41113547 31 + TSS region transcription start site region 55809
Tssr55810 6 41113552 to 41113581 29 + TSS region transcription start site region 55810
Trbv12-1 6 41113567 to 41114067 500 + gene segment T cell receptor beta, variable 12-1
Tssr55811 6 41113582 to 41113593 11 + TSS region transcription start site region 55811
Tssr55812 6 41115998 to 41115999 1 + TSS region transcription start site region 55812
Tssr55813 6 41116000 to 41116025 25 + TSS region transcription start site region 55813
Trbv13-1 6 41116036 to 41116468 432 + gene segment T cell receptor beta, variable 13-1
Tssr55814 6 41116037 to 41116055 18 + TSS region transcription start site region 55814
Tssr55815 6 41118449 to 41118460 11 + TSS region transcription start site region 55815
Tssr55816 6 41118495 to 41118506 11 + TSS region transcription start site region 55816