Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:39663298-40749259

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Braf 6 39603237 to 39725463 122226 - protein coding gene Braf transforming gene
Tssr60502 6 39705723 to 39705771 48 - TSS region transcription start site region 60502
Tssr60503 6 39708836 to 39708840 4 - TSS region transcription start site region 60503
Cpgi17327 6 39724613 to 39725717 1104 CpG island CpG island 17327
Tssr60504 6 39725293 to 39725357 64 - TSS region transcription start site region 60504
Tssr60505 6 39725419 to 39725429 10 - TSS region transcription start site region 60505
Tssr60506 6 39725448 to 39725478 30 - TSS region transcription start site region 60506
Tssr60507 6 39725487 to 39725504 17 - TSS region transcription start site region 60507
Mrps33 6 39801804 to 39810936 9132 - protein coding gene mitochondrial ribosomal protein S33
5730402E23Rik 6 39810180 to 39810647 467 unclassified gene RIKEN cDNA 5730402E23 gene
Cpgi17328 6 39810511 to 39811215 704 CpG island CpG island 17328
Tssr60508 6 39810865 to 39810876 11 - TSS region transcription start site region 60508
Tssr60509 6 39810881 to 39810905 24 - TSS region transcription start site region 60509
Gm7554 6 39828200 to 39828773 573 - pseudogene predicted gene 7554
Gm7556 6 39843212 to 39844295 1083 - pseudogene predicted gene 7556
Tssr60510 6 39844357 to 39844401 44 - TSS region transcription start site region 60510
Cpgi17329 6 39871376 to 39873623 2247 CpG island CpG island 17329
Tssr55734 6 39871433 to 39871460 27 + TSS region transcription start site region 55734
Tssr55735 6 39871461 to 39871506 45 + TSS region transcription start site region 55735
Tssr55736 6 39871509 to 39871520 11 + TSS region transcription start site region 55736
Gm26833 6 39871532 to 39871971 439 - antisense lncRNA gene predicted gene, 26833
Tssr55737 6 39871551 to 39871560 9 + TSS region transcription start site region 55737
Tssr55738 6 39872208 to 39872219 11 + TSS region transcription start site region 55738
Tmem178b 6 39873271 to 40255150 381879 + protein coding gene transmembrane protein 178B
Tssr55739 6 39876864 to 39876867 3 + TSS region transcription start site region 55739
Tssr55740 6 39879617 to 39879622 5 + TSS region transcription start site region 55740
D6Mit161.1 6 39929287 to 39929422 135 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 161.1
D6Mit161 6 39929398 to 39929531 133 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 161
D6Mit239 6 39929402 to 39929526 124 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 239
D6Mit161.2 6 39929498 to 39929617 119 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 161.2
Gm37995 6 40026894 to 40028607 1713 + unclassified gene predicted gene, 37995
Tssr55741 6 40038280 to 40038285 5 + TSS region transcription start site region 55741
Tssr60511 6 40049669 to 40049717 48 - TSS region transcription start site region 60511
Gm37673 6 40098722 to 40101172 2450 + unclassified gene predicted gene, 37673
Gm26638 6 40118779 to 40129477 10698 + sense intronic lncRNA gene predicted gene, 26638
Gm26807 6 40203298 to 40209259 5961 - antisense lncRNA gene predicted gene, 26807
Tssr55742 6 40221811 to 40221823 12 + TSS region transcription start site region 55742
Gm37003 6 40226219 to 40229045 2826 + unclassified gene predicted gene, 37003
Agk 6 40325172 to 40396762 71590 + protein coding gene acylglycerol kinase
Cpgi17330 6 40325286 to 40325831 545 CpG island CpG island 17330
Tssr55743 6 40325471 to 40325501 30 + TSS region transcription start site region 55743
Tssr55744 6 40359905 to 40359940 35 + TSS region transcription start site region 55744
E330009J07Rik 6 40401375 to 40436135 34760 - protein coding gene RIKEN cDNA E330009J07 gene
Tssr60512 6 40401771 to 40401775 4 - TSS region transcription start site region 60512
Tssr60513 6 40431578 to 40431581 3 - TSS region transcription start site region 60513
Tssr60514 6 40435150 to 40435157 7 - TSS region transcription start site region 60514
Cpgi17331 6 40435155 to 40436464 1309 CpG island CpG island 17331
Tssr60515 6 40436078 to 40436088 10 - TSS region transcription start site region 60515
Tssr60516 6 40436089 to 40436101 12 - TSS region transcription start site region 60516
Tssr60517 6 40436104 to 40436151 47 - TSS region transcription start site region 60517
Wee2 6 40439088 to 40466813 27725 + protein coding gene WEE1 homolog 2 (S. pombe)
A930033M24Rik 6 40470542 to 40471279 737 unclassified gene RIKEN cDNA A930033M24 gene
Cpgi17332 6 40471214 to 40471831 617 CpG island CpG island 17332
Tssr55745 6 40471361 to 40471511 150 + TSS region transcription start site region 55745
Ssbp1 6 40471415 to 40481823 10408 + protein coding gene single-stranded DNA binding protein 1
Tssr55746 6 40480308 to 40480312 4 + TSS region transcription start site region 55746
Tas2r137 6 40491238 to 40492239 1001 + protein coding gene taste receptor, type 2, member 137
Tas2r108 6 40493592 to 40494485 893 + protein coding gene taste receptor, type 2, member 108
Prss37 6 40514824 to 40519508 4684 - protein coding gene protease, serine 37
Tssr60518 6 40519469 to 40519490 21 - TSS region transcription start site region 60518
Gm43295 6 40522804 to 40523215 411 - pseudogene predicted gene 43295
Olfr461 6 40544036 to 40544977 941 - protein coding gene olfactory receptor 461
Olfr460 6 40569152 to 40572504 3352 + protein coding gene olfactory receptor 460
Clec5a 6 40574898 to 40585805 10907 - protein coding gene C-type lectin domain family 5, member a
Tssr60519 6 40577420 to 40577434 14 - TSS region transcription start site region 60519
Tssr60520 6 40577733 to 40577745 12 - TSS region transcription start site region 60520
Tssr60521 6 40585756 to 40585763 7 - TSS region transcription start site region 60521
Tssr60522 6 40585783 to 40585811 28 - TSS region transcription start site region 60522
Tssr60523 6 40585817 to 40585828 11 - TSS region transcription start site region 60523
Tssr60524 6 40585831 to 40585847 16 - TSS region transcription start site region 60524
Tas2r138 6 40612315 to 40613310 995 - protein coding gene taste receptor, type 2, member 138
D6Mit382 6 40627019 to 40627162 143 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology-382
Tssr55747 6 40628570 to 40628579 9 + TSS region transcription start site region 55747
Tssr55748 6 40628588 to 40628595 7 + TSS region transcription start site region 55748
Tssr55749 6 40628601 to 40628610 9 + TSS region transcription start site region 55749
Tssr55750 6 40628613 to 40628627 14 + TSS region transcription start site region 55750
Tssr55751 6 40628824 to 40628839 15 + TSS region transcription start site region 55751
Mgam 6 40628831 to 40769123 140292 + protein coding gene maltase-glucoamylase
Tssr55752 6 40634807 to 40634864 57 + TSS region transcription start site region 55752
Tssr55753 6 40635055 to 40635067 12 + TSS region transcription start site region 55753
Tssr55754 6 40635072 to 40635111 39 + TSS region transcription start site region 55754
Tssr55755 6 40642981 to 40643003 22 + TSS region transcription start site region 55755
Tssr55756 6 40643527 to 40643529 2 + TSS region transcription start site region 55756
Tssr55757 6 40656409 to 40656420 11 + TSS region transcription start site region 55757
Tssr55758 6 40735370 to 40735373 3 + TSS region transcription start site region 55758
Tssr55759 6 40740419 to 40740422 3 + TSS region transcription start site region 55759