Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:39484617-40274622

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dennd2a 6 39462378 to 39557867 95489 - protein coding gene DENN/MADD domain containing 2A
Tssr60488 6 39527393 to 39527433 40 - TSS region transcription start site region 60488
8030453O22Rik 6 39527532 to 39544489 16957 + unclassified non-coding RNA gene RIKEN cDNA 8030453O22 gene
Tssr55729 6 39527535 to 39527550 15 + TSS region transcription start site region 55729
Cpgi17324 6 39556951 to 39558517 1566 CpG island CpG island 17324
Tssr60489 6 39557677 to 39557700 23 - TSS region transcription start site region 60489
Tssr60490 6 39557706 to 39557742 36 - TSS region transcription start site region 60490
Tssr60491 6 39557775 to 39557793 18 - TSS region transcription start site region 60491
Tssr60492 6 39557798 to 39557827 29 - TSS region transcription start site region 60492
Tssr60493 6 39557830 to 39557851 21 - TSS region transcription start site region 60493
Tssr60494 6 39558101 to 39558111 10 - TSS region transcription start site region 60494
Tssr60495 6 39558131 to 39558139 8 - TSS region transcription start site region 60495
Tssr60496 6 39558156 to 39558169 13 - TSS region transcription start site region 60496
D6Mit173 6 39573128 to 39573272 144 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 173
Cpgi17325 6 39573686 to 39574397 711 CpG island CpG island 17325
Tssr55730 6 39573858 to 39573887 29 + TSS region transcription start site region 55730
Adck2 6 39573873 to 39588769 14896 + protein coding gene aarF domain containing kinase 2
Tssr55731 6 39573894 to 39573940 46 + TSS region transcription start site region 55731
Gm16272 6 39584092 to 39592784 8692 - antisense lncRNA gene predicted gene 16272
Gm42420 6 39585753 to 39596595 10842 + protein coding gene predicted gene, 42420
Cpgi17326 6 39592285 to 39593099 814 CpG island CpG island 17326
Tssr60497 6 39592521 to 39592554 33 - TSS region transcription start site region 60497
Ndufb2 6 39592550 to 39599472 6922 + protein coding gene NADH:ubiquinone oxidoreductase subunit B2
Tssr55732 6 39592569 to 39592588 19 + TSS region transcription start site region 55732
Tssr55733 6 39592590 to 39592617 27 + TSS region transcription start site region 55733
Braf 6 39603237 to 39725463 122226 - protein coding gene Braf transforming gene
Tssr60498 6 39603689 to 39603712 23 - TSS region transcription start site region 60498
Tssr60499 6 39607666 to 39607670 4 - TSS region transcription start site region 60499
Gm34389 6 39616502 to 39625074 8572 + lncRNA gene predicted gene, 34389
D6Mit153 6 39637674 to 39637807 133 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 153
Tssr60500 6 39637869 to 39637880 11 - TSS region transcription start site region 60500
Fth-ps2 6 39653299 to 39653788 489 - pseudogene ferritin heavy chain, pseudogene 2
Tssr1816 6 39653799 to 39653804 5 + TSS region transcription start site region 1816
Tssr60501 6 39654112 to 39654117 5 - TSS region transcription start site region 60501
Tssr60502 6 39705723 to 39705771 48 - TSS region transcription start site region 60502
Tssr60503 6 39708836 to 39708840 4 - TSS region transcription start site region 60503
Cpgi17327 6 39724613 to 39725717 1104 CpG island CpG island 17327
Tssr60504 6 39725293 to 39725357 64 - TSS region transcription start site region 60504
Tssr60505 6 39725419 to 39725429 10 - TSS region transcription start site region 60505
Tssr60506 6 39725448 to 39725478 30 - TSS region transcription start site region 60506
Tssr60507 6 39725487 to 39725504 17 - TSS region transcription start site region 60507
Mrps33 6 39801804 to 39810936 9132 - protein coding gene mitochondrial ribosomal protein S33
5730402E23Rik 6 39810180 to 39810647 467 unclassified gene RIKEN cDNA 5730402E23 gene
Cpgi17328 6 39810511 to 39811215 704 CpG island CpG island 17328
Tssr60508 6 39810865 to 39810876 11 - TSS region transcription start site region 60508
Tssr60509 6 39810881 to 39810905 24 - TSS region transcription start site region 60509
Gm7554 6 39828200 to 39828773 573 - pseudogene predicted gene 7554
Gm7556 6 39843212 to 39844295 1083 - pseudogene predicted gene 7556
Tssr60510 6 39844357 to 39844401 44 - TSS region transcription start site region 60510
Cpgi17329 6 39871376 to 39873623 2247 CpG island CpG island 17329
Tssr55734 6 39871433 to 39871460 27 + TSS region transcription start site region 55734
Tssr55735 6 39871461 to 39871506 45 + TSS region transcription start site region 55735
Tssr55736 6 39871509 to 39871520 11 + TSS region transcription start site region 55736
Gm26833 6 39871532 to 39871971 439 - antisense lncRNA gene predicted gene, 26833
Tssr55737 6 39871551 to 39871560 9 + TSS region transcription start site region 55737
Tssr55738 6 39872208 to 39872219 11 + TSS region transcription start site region 55738
Tmem178b 6 39873271 to 40255150 381879 + protein coding gene transmembrane protein 178B
Tssr55739 6 39876864 to 39876867 3 + TSS region transcription start site region 55739
Tssr55740 6 39879617 to 39879622 5 + TSS region transcription start site region 55740
D6Mit161.1 6 39929287 to 39929422 135 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 161.1
D6Mit161 6 39929398 to 39929531 133 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 161
D6Mit239 6 39929402 to 39929526 124 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 239
D6Mit161.2 6 39929498 to 39929617 119 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 161.2
Gm37995 6 40026894 to 40028607 1713 + unclassified gene predicted gene, 37995
Tssr55741 6 40038280 to 40038285 5 + TSS region transcription start site region 55741
Tssr60511 6 40049669 to 40049717 48 - TSS region transcription start site region 60511
Gm37673 6 40098722 to 40101172 2450 + unclassified gene predicted gene, 37673
Gm26638 6 40118779 to 40129477 10698 + sense intronic lncRNA gene predicted gene, 26638
Gm26807 6 40203298 to 40209259 5961 - antisense lncRNA gene predicted gene, 26807
Tssr55742 6 40221811 to 40221823 12 + TSS region transcription start site region 55742
Gm37003 6 40226219 to 40229045 2826 + unclassified gene predicted gene, 37003