Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:39408873-39753769

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mkrn1 6 39397804 to 39420462 22658 - protein coding gene makorin, ring finger protein, 1
Tssr60471 6 39412221 to 39412223 2 - TSS region transcription start site region 60471
Cpgi17323 6 39419439 to 39420859 1420 CpG island CpG island 17323
Tssr60472 6 39419571 to 39419582 11 - TSS region transcription start site region 60472
Tssr60473 6 39419691 to 39419698 7 - TSS region transcription start site region 60473
Tssr60474 6 39419761 to 39419817 56 - TSS region transcription start site region 60474
Tssr60475 6 39419820 to 39419827 7 - TSS region transcription start site region 60475
Tssr55723 6 39419821 to 39419842 21 + TSS region transcription start site region 55723
Tssr60476 6 39419942 to 39419958 16 - TSS region transcription start site region 60476
Tssr60477 6 39419967 to 39420074 107 - TSS region transcription start site region 60477
Tssr60478 6 39420243 to 39420270 27 - TSS region transcription start site region 60478
Tssr60479 6 39420281 to 39420329 48 - TSS region transcription start site region 60479
Gm10244 6 39420378 to 39421294 916 + antisense lncRNA gene predicted gene 10244
Tssr60480 6 39420402 to 39420413 11 - TSS region transcription start site region 60480
Tssr60481 6 39420418 to 39420481 63 - TSS region transcription start site region 60481
Tssr60482 6 39420498 to 39420505 7 - TSS region transcription start site region 60482
Tssr55724 6 39420573 to 39420597 24 + TSS region transcription start site region 55724
Tssr60483 6 39420647 to 39420665 18 - TSS region transcription start site region 60483
Gm25402 6 39422289 to 39422419 130 - snoRNA gene predicted gene, 25402
Tssr60484 6 39423453 to 39423466 13 - TSS region transcription start site region 60484
Tssr55725 6 39431028 to 39431053 25 + TSS region transcription start site region 55725
Tssr55726 6 39437882 to 39437885 3 + TSS region transcription start site region 55726
Tssr55727 6 39442271 to 39442277 6 + TSS region transcription start site region 55727
Tssr60485 6 39445408 to 39445416 8 - TSS region transcription start site region 60485
Tssr60486 6 39445804 to 39445820 16 - TSS region transcription start site region 60486
Tssr55728 6 39446907 to 39446913 6 + TSS region transcription start site region 55728
Tssr60487 6 39447574 to 39447581 7 - TSS region transcription start site region 60487
Dennd2a 6 39462378 to 39557867 95489 - protein coding gene DENN/MADD domain containing 2A
Tssr60488 6 39527393 to 39527433 40 - TSS region transcription start site region 60488
8030453O22Rik 6 39527532 to 39544489 16957 + unclassified non-coding RNA gene RIKEN cDNA 8030453O22 gene
Tssr55729 6 39527535 to 39527550 15 + TSS region transcription start site region 55729
Cpgi17324 6 39556951 to 39558517 1566 CpG island CpG island 17324
Tssr60489 6 39557677 to 39557700 23 - TSS region transcription start site region 60489
Tssr60490 6 39557706 to 39557742 36 - TSS region transcription start site region 60490
Tssr60491 6 39557775 to 39557793 18 - TSS region transcription start site region 60491
Tssr60492 6 39557798 to 39557827 29 - TSS region transcription start site region 60492
Tssr60493 6 39557830 to 39557851 21 - TSS region transcription start site region 60493
Tssr60494 6 39558101 to 39558111 10 - TSS region transcription start site region 60494
Tssr60495 6 39558131 to 39558139 8 - TSS region transcription start site region 60495
Tssr60496 6 39558156 to 39558169 13 - TSS region transcription start site region 60496
D6Mit173 6 39573128 to 39573272 144 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 173
Cpgi17325 6 39573686 to 39574397 711 CpG island CpG island 17325
Tssr55730 6 39573858 to 39573887 29 + TSS region transcription start site region 55730
Adck2 6 39573873 to 39588769 14896 + protein coding gene aarF domain containing kinase 2
Tssr55731 6 39573894 to 39573940 46 + TSS region transcription start site region 55731
Gm16272 6 39584092 to 39592784 8692 - antisense lncRNA gene predicted gene 16272
Gm42420 6 39585753 to 39596595 10842 + protein coding gene predicted gene, 42420
Cpgi17326 6 39592285 to 39593099 814 CpG island CpG island 17326
Tssr60497 6 39592521 to 39592554 33 - TSS region transcription start site region 60497
Ndufb2 6 39592550 to 39599472 6922 + protein coding gene NADH:ubiquinone oxidoreductase subunit B2
Tssr55732 6 39592569 to 39592588 19 + TSS region transcription start site region 55732
Tssr55733 6 39592590 to 39592617 27 + TSS region transcription start site region 55733
Braf 6 39603237 to 39725463 122226 - protein coding gene Braf transforming gene
Tssr60498 6 39603689 to 39603712 23 - TSS region transcription start site region 60498
Tssr60499 6 39607666 to 39607670 4 - TSS region transcription start site region 60499
Gm34389 6 39616502 to 39625074 8572 + lncRNA gene predicted gene, 34389
D6Mit153 6 39637674 to 39637807 133 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 153
Tssr60500 6 39637869 to 39637880 11 - TSS region transcription start site region 60500
Fth-ps2 6 39653299 to 39653788 489 - pseudogene ferritin heavy chain, pseudogene 2
Tssr1816 6 39653799 to 39653804 5 + TSS region transcription start site region 1816
Tssr60501 6 39654112 to 39654117 5 - TSS region transcription start site region 60501
Tssr60502 6 39705723 to 39705771 48 - TSS region transcription start site region 60502
Tssr60503 6 39708836 to 39708840 4 - TSS region transcription start site region 60503
Cpgi17327 6 39724613 to 39725717 1104 CpG island CpG island 17327
Tssr60504 6 39725293 to 39725357 64 - TSS region transcription start site region 60504
Tssr60505 6 39725419 to 39725429 10 - TSS region transcription start site region 60505
Tssr60506 6 39725448 to 39725478 30 - TSS region transcription start site region 60506
Tssr60507 6 39725487 to 39725504 17 - TSS region transcription start site region 60507