Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:39149773-39562675

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kdm7a 6 39136620 to 39206773 70153 - protein coding gene lysine (K)-specific demethylase 7A
Tssr55713 6 39150921 to 39150932 11 + TSS region transcription start site region 55713
Tssr60455 6 39165030 to 39165036 6 - TSS region transcription start site region 60455
Tssr60456 6 39196682 to 39196720 38 - TSS region transcription start site region 60456
Tssr60457 6 39202994 to 39202998 4 - TSS region transcription start site region 60457
Cpgi17319 6 39205261 to 39207474 2213 CpG island CpG island 17319
Tssr55714 6 39205494 to 39205506 12 + TSS region transcription start site region 55714
Tssr55715 6 39205512 to 39205526 14 + TSS region transcription start site region 55715
Tssr55716 6 39205536 to 39205547 11 + TSS region transcription start site region 55716
Tssr60458 6 39206631 to 39206662 31 - TSS region transcription start site region 60458
Tssr60459 6 39206668 to 39206685 17 - TSS region transcription start site region 60459
Tssr60460 6 39206709 to 39206750 41 - TSS region transcription start site region 60460
Tssr60461 6 39206782 to 39206831 49 - TSS region transcription start site region 60461
Gm49041 6 39207068 to 39207611 543 + bidirectional promoter lncRNA gene predicted gene, 49041
Tssr60462 6 39207150 to 39207161 11 - TSS region transcription start site region 60462
Tssr60463 6 39207171 to 39207211 40 - TSS region transcription start site region 60463
Tssr60464 6 39207331 to 39207366 35 - TSS region transcription start site region 60464
Tssr60465 6 39207468 to 39207479 11 - TSS region transcription start site region 60465
Tssr55717 6 39226465 to 39226499 34 + TSS region transcription start site region 55717
Gm38794 6 39227565 to 39245345 17780 + lncRNA gene predicted gene, 38794
Gm43479 6 39240114 to 39242541 2427 + lincRNA gene predicted gene 43479
Tssr60466 6 39241672 to 39241691 19 - TSS region transcription start site region 60466
Gm34147 6 39246153 to 39265611 19458 - lncRNA gene predicted gene, 34147
Cpgi17320 6 39256501 to 39257587 1086 CpG island CpG island 17320
Gm26008 6 39265844 to 39265942 98 - snRNA gene predicted gene, 26008
Slc37a3 6 39334773 to 39377675 42902 - protein coding gene solute carrier family 37 (glycerol-3-phosphate transporter), member 3
D6Mit78 6 39342345 to 39342487 142 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 78
Cpgi17321 6 39344190 to 39344375 185 CpG island CpG island 17321
Tssr60467 6 39347421 to 39347440 19 - TSS region transcription start site region 60467
Cpgi17322 6 39377254 to 39377917 663 CpG island CpG island 17322
Tssr60468 6 39377614 to 39377631 17 - TSS region transcription start site region 60468
Tssr60469 6 39377641 to 39377678 37 - TSS region transcription start site region 60469
Tssr60470 6 39377681 to 39377710 29 - TSS region transcription start site region 60470
Tssr55718 6 39379974 to 39379995 21 + TSS region transcription start site region 55718
Tssr55719 6 39380021 to 39380047 26 + TSS region transcription start site region 55719
Tssr55720 6 39381102 to 39381117 15 + TSS region transcription start site region 55720
Rab19 6 39381175 to 39390380 9205 + protein coding gene RAB19, member RAS oncogene family
Tssr55721 6 39381347 to 39381366 19 + TSS region transcription start site region 55721
Tssr55722 6 39381386 to 39381411 25 + TSS region transcription start site region 55722
D6Mit1002 6 39393083 to 39393231 148 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 1002
Mkrn1 6 39397804 to 39420462 22658 - protein coding gene makorin, ring finger protein, 1
Tssr60471 6 39412221 to 39412223 2 - TSS region transcription start site region 60471
Cpgi17323 6 39419439 to 39420859 1420 CpG island CpG island 17323
Tssr60472 6 39419571 to 39419582 11 - TSS region transcription start site region 60472
Tssr60473 6 39419691 to 39419698 7 - TSS region transcription start site region 60473
Tssr60474 6 39419761 to 39419817 56 - TSS region transcription start site region 60474
Tssr60475 6 39419820 to 39419827 7 - TSS region transcription start site region 60475
Tssr55723 6 39419821 to 39419842 21 + TSS region transcription start site region 55723
Tssr60476 6 39419942 to 39419958 16 - TSS region transcription start site region 60476
Tssr60477 6 39419967 to 39420074 107 - TSS region transcription start site region 60477
Tssr60478 6 39420243 to 39420270 27 - TSS region transcription start site region 60478
Tssr60479 6 39420281 to 39420329 48 - TSS region transcription start site region 60479
Gm10244 6 39420378 to 39421294 916 + antisense lncRNA gene predicted gene 10244
Tssr60480 6 39420402 to 39420413 11 - TSS region transcription start site region 60480
Tssr60481 6 39420418 to 39420481 63 - TSS region transcription start site region 60481
Tssr60482 6 39420498 to 39420505 7 - TSS region transcription start site region 60482
Tssr55724 6 39420573 to 39420597 24 + TSS region transcription start site region 55724
Tssr60483 6 39420647 to 39420665 18 - TSS region transcription start site region 60483
Gm25402 6 39422289 to 39422419 130 - snoRNA gene predicted gene, 25402
Tssr60484 6 39423453 to 39423466 13 - TSS region transcription start site region 60484
Tssr55725 6 39431028 to 39431053 25 + TSS region transcription start site region 55725
Tssr55726 6 39437882 to 39437885 3 + TSS region transcription start site region 55726
Tssr55727 6 39442271 to 39442277 6 + TSS region transcription start site region 55727
Tssr60485 6 39445408 to 39445416 8 - TSS region transcription start site region 60485
Tssr60486 6 39445804 to 39445820 16 - TSS region transcription start site region 60486
Tssr55728 6 39446907 to 39446913 6 + TSS region transcription start site region 55728
Tssr60487 6 39447574 to 39447581 7 - TSS region transcription start site region 60487
Dennd2a 6 39462378 to 39557867 95489 - protein coding gene DENN/MADD domain containing 2A
Tssr60488 6 39527393 to 39527433 40 - TSS region transcription start site region 60488
8030453O22Rik 6 39527532 to 39544489 16957 + unclassified non-coding RNA gene RIKEN cDNA 8030453O22 gene
Tssr55729 6 39527535 to 39527550 15 + TSS region transcription start site region 55729
Cpgi17324 6 39556951 to 39558517 1566 CpG island CpG island 17324
Tssr60489 6 39557677 to 39557700 23 - TSS region transcription start site region 60489
Tssr60490 6 39557706 to 39557742 36 - TSS region transcription start site region 60490
Tssr60491 6 39557775 to 39557793 18 - TSS region transcription start site region 60491
Tssr60492 6 39557798 to 39557827 29 - TSS region transcription start site region 60492
Tssr60493 6 39557830 to 39557851 21 - TSS region transcription start site region 60493
Tssr60494 6 39558101 to 39558111 10 - TSS region transcription start site region 60494
Tssr60495 6 39558131 to 39558139 8 - TSS region transcription start site region 60495
Tssr60496 6 39558156 to 39558169 13 - TSS region transcription start site region 60496