Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:39006631-39406662

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tbxas1 6 38875404 to 39084585 209181 + protein coding gene thromboxane A synthase 1, platelet
Gm23010 6 39013666 to 39013791 125 + snoRNA gene predicted gene, 23010
Gm38489 6 39019198 to 39043829 24631 - lncRNA gene predicted gene, 38489
Tssr55704 6 39021665 to 39021676 11 + TSS region transcription start site region 55704
Tssr55705 6 39024305 to 39024307 2 + TSS region transcription start site region 55705
Tssr55706 6 39033383 to 39033401 18 + TSS region transcription start site region 55706
Tssr55707 6 39033499 to 39033511 12 + TSS region transcription start site region 55707
Tssr55708 6 39035542 to 39035572 30 + TSS region transcription start site region 55708
Gm46989 6 39044166 to 39056520 12354 - lncRNA gene predicted gene, 46989
Tssr55709 6 39044384 to 39044397 13 + TSS region transcription start site region 55709
Tssr55710 6 39044399 to 39044411 12 + TSS region transcription start site region 55710
Tssr60446 6 39049050 to 39049064 14 - TSS region transcription start site region 60446
1700025N23Rik 6 39063879 to 39067586 3707 - antisense lncRNA gene RIKEN cDNA 1700025N23 gene
Tssr60447 6 39067580 to 39067591 11 - TSS region transcription start site region 60447
Tssr60448 6 39078128 to 39078133 5 - TSS region transcription start site region 60448
Parp12 6 39086412 to 39118349 31937 - protein coding gene poly (ADP-ribose) polymerase family, member 12
Tssr60449 6 39087521 to 39087540 19 - TSS region transcription start site region 60449
Tssr60450 6 39087629 to 39087643 14 - TSS region transcription start site region 60450
Tssr60451 6 39089006 to 39089020 14 - TSS region transcription start site region 60451
Cpgi17318 6 39117531 to 39119047 1516 CpG island CpG island 17318
Tssr60452 6 39118164 to 39118177 13 - TSS region transcription start site region 60452
Tssr60453 6 39118182 to 39118207 25 - TSS region transcription start site region 60453
Tssr60454 6 39118211 to 39118252 41 - TSS region transcription start site region 60454
Tssr55711 6 39118268 to 39118342 74 + TSS region transcription start site region 55711
4930599N23Rik 6 39118473 to 39148312 29839 + antisense lncRNA gene RIKEN cDNA 4930599N23 gene
Gm42963 6 39125165 to 39126381 1216 - unclassified gene predicted gene 42963
Tssr55712 6 39126619 to 39126644 25 + TSS region transcription start site region 55712
Kdm7a 6 39136620 to 39206773 70153 - protein coding gene lysine (K)-specific demethylase 7A
Tssr55713 6 39150921 to 39150932 11 + TSS region transcription start site region 55713
Tssr60455 6 39165030 to 39165036 6 - TSS region transcription start site region 60455
Tssr60456 6 39196682 to 39196720 38 - TSS region transcription start site region 60456
Tssr60457 6 39202994 to 39202998 4 - TSS region transcription start site region 60457
Cpgi17319 6 39205261 to 39207474 2213 CpG island CpG island 17319
Tssr55714 6 39205494 to 39205506 12 + TSS region transcription start site region 55714
Tssr55715 6 39205512 to 39205526 14 + TSS region transcription start site region 55715
Tssr55716 6 39205536 to 39205547 11 + TSS region transcription start site region 55716
Tssr60458 6 39206631 to 39206662 31 - TSS region transcription start site region 60458
Tssr60459 6 39206668 to 39206685 17 - TSS region transcription start site region 60459
Tssr60460 6 39206709 to 39206750 41 - TSS region transcription start site region 60460
Tssr60461 6 39206782 to 39206831 49 - TSS region transcription start site region 60461
Gm49041 6 39207068 to 39207611 543 + bidirectional promoter lncRNA gene predicted gene, 49041
Tssr60462 6 39207150 to 39207161 11 - TSS region transcription start site region 60462
Tssr60463 6 39207171 to 39207211 40 - TSS region transcription start site region 60463
Tssr60464 6 39207331 to 39207366 35 - TSS region transcription start site region 60464
Tssr60465 6 39207468 to 39207479 11 - TSS region transcription start site region 60465
Tssr55717 6 39226465 to 39226499 34 + TSS region transcription start site region 55717
Gm38794 6 39227565 to 39245345 17780 + lncRNA gene predicted gene, 38794
Gm43479 6 39240114 to 39242541 2427 + lincRNA gene predicted gene 43479
Tssr60466 6 39241672 to 39241691 19 - TSS region transcription start site region 60466
Gm34147 6 39246153 to 39265611 19458 - lncRNA gene predicted gene, 34147
Cpgi17320 6 39256501 to 39257587 1086 CpG island CpG island 17320
Gm26008 6 39265844 to 39265942 98 - snRNA gene predicted gene, 26008
Slc37a3 6 39334773 to 39377675 42902 - protein coding gene solute carrier family 37 (glycerol-3-phosphate transporter), member 3
D6Mit78 6 39342345 to 39342487 142 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 78
Cpgi17321 6 39344190 to 39344375 185 CpG island CpG island 17321
Tssr60467 6 39347421 to 39347440 19 - TSS region transcription start site region 60467
Cpgi17322 6 39377254 to 39377917 663 CpG island CpG island 17322
Tssr60468 6 39377614 to 39377631 17 - TSS region transcription start site region 60468
Tssr60469 6 39377641 to 39377678 37 - TSS region transcription start site region 60469
Tssr60470 6 39377681 to 39377710 29 - TSS region transcription start site region 60470
Tssr55718 6 39379974 to 39379995 21 + TSS region transcription start site region 55718
Tssr55719 6 39380021 to 39380047 26 + TSS region transcription start site region 55719
Tssr55720 6 39381102 to 39381117 15 + TSS region transcription start site region 55720
Rab19 6 39381175 to 39390380 9205 + protein coding gene RAB19, member RAS oncogene family
Tssr55721 6 39381347 to 39381366 19 + TSS region transcription start site region 55721
Tssr55722 6 39381386 to 39381411 25 + TSS region transcription start site region 55722
D6Mit1002 6 39393083 to 39393231 148 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 1002
Mkrn1 6 39397804 to 39420462 22658 - protein coding gene makorin, ring finger protein, 1