Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:38960723-40450771

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187 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cia6b 6 34734663 to 38969603 4234940 QTL collagen induced arthritis QTL 6b
Tbxas1 6 38875404 to 39084585 209181 + protein coding gene thromboxane A synthase 1, platelet
Gm42962 6 38917098 to 38984325 67227 - antisense lncRNA gene predicted gene 42962
D6Mit90 6 38969475 to 38969603 128 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 90
Tssr55699 6 38980996 to 38981004 8 + TSS region transcription start site region 55699
Tssr55700 6 38983303 to 38983317 14 + TSS region transcription start site region 55700
Tssr55701 6 38983325 to 38983338 13 + TSS region transcription start site region 55701
Gm38688 6 38988836 to 39006437 17601 - lncRNA gene predicted gene, 38688
Tssr55702 6 39002685 to 39002697 12 + TSS region transcription start site region 55702
Tssr55703 6 39004035 to 39004050 15 + TSS region transcription start site region 55703
Gm23010 6 39013666 to 39013791 125 + snoRNA gene predicted gene, 23010
Gm38489 6 39019198 to 39043829 24631 - lncRNA gene predicted gene, 38489
Tssr55704 6 39021665 to 39021676 11 + TSS region transcription start site region 55704
Tssr55705 6 39024305 to 39024307 2 + TSS region transcription start site region 55705
Tssr55706 6 39033383 to 39033401 18 + TSS region transcription start site region 55706
Tssr55707 6 39033499 to 39033511 12 + TSS region transcription start site region 55707
Tssr55708 6 39035542 to 39035572 30 + TSS region transcription start site region 55708
Gm46989 6 39044166 to 39056520 12354 - lncRNA gene predicted gene, 46989
Tssr55709 6 39044384 to 39044397 13 + TSS region transcription start site region 55709
Tssr55710 6 39044399 to 39044411 12 + TSS region transcription start site region 55710
Tssr60446 6 39049050 to 39049064 14 - TSS region transcription start site region 60446
1700025N23Rik 6 39063879 to 39067586 3707 - antisense lncRNA gene RIKEN cDNA 1700025N23 gene
Tssr60447 6 39067580 to 39067591 11 - TSS region transcription start site region 60447
Tssr60448 6 39078128 to 39078133 5 - TSS region transcription start site region 60448
Parp12 6 39086412 to 39118349 31937 - protein coding gene poly (ADP-ribose) polymerase family, member 12
Tssr60449 6 39087521 to 39087540 19 - TSS region transcription start site region 60449
Tssr60450 6 39087629 to 39087643 14 - TSS region transcription start site region 60450
Tssr60451 6 39089006 to 39089020 14 - TSS region transcription start site region 60451
Cpgi17318 6 39117531 to 39119047 1516 CpG island CpG island 17318
Tssr60452 6 39118164 to 39118177 13 - TSS region transcription start site region 60452
Tssr60453 6 39118182 to 39118207 25 - TSS region transcription start site region 60453
Tssr60454 6 39118211 to 39118252 41 - TSS region transcription start site region 60454
Tssr55711 6 39118268 to 39118342 74 + TSS region transcription start site region 55711
4930599N23Rik 6 39118473 to 39148312 29839 + antisense lncRNA gene RIKEN cDNA 4930599N23 gene
Gm42963 6 39125165 to 39126381 1216 - unclassified gene predicted gene 42963
Tssr55712 6 39126619 to 39126644 25 + TSS region transcription start site region 55712
Kdm7a 6 39136620 to 39206773 70153 - protein coding gene lysine (K)-specific demethylase 7A
Tssr55713 6 39150921 to 39150932 11 + TSS region transcription start site region 55713
Tssr60455 6 39165030 to 39165036 6 - TSS region transcription start site region 60455
Tssr60456 6 39196682 to 39196720 38 - TSS region transcription start site region 60456
Tssr60457 6 39202994 to 39202998 4 - TSS region transcription start site region 60457
Cpgi17319 6 39205261 to 39207474 2213 CpG island CpG island 17319
Tssr55714 6 39205494 to 39205506 12 + TSS region transcription start site region 55714
Tssr55715 6 39205512 to 39205526 14 + TSS region transcription start site region 55715
Tssr55716 6 39205536 to 39205547 11 + TSS region transcription start site region 55716
Tssr60458 6 39206631 to 39206662 31 - TSS region transcription start site region 60458
Tssr60459 6 39206668 to 39206685 17 - TSS region transcription start site region 60459
Tssr60460 6 39206709 to 39206750 41 - TSS region transcription start site region 60460
Tssr60461 6 39206782 to 39206831 49 - TSS region transcription start site region 60461
Gm49041 6 39207068 to 39207611 543 + bidirectional promoter lncRNA gene predicted gene, 49041
Tssr60462 6 39207150 to 39207161 11 - TSS region transcription start site region 60462
Tssr60463 6 39207171 to 39207211 40 - TSS region transcription start site region 60463
Tssr60464 6 39207331 to 39207366 35 - TSS region transcription start site region 60464
Tssr60465 6 39207468 to 39207479 11 - TSS region transcription start site region 60465
Tssr55717 6 39226465 to 39226499 34 + TSS region transcription start site region 55717
Gm38794 6 39227565 to 39245345 17780 + lncRNA gene predicted gene, 38794
Gm43479 6 39240114 to 39242541 2427 + lincRNA gene predicted gene 43479
Tssr60466 6 39241672 to 39241691 19 - TSS region transcription start site region 60466
Gm34147 6 39246153 to 39265611 19458 - lncRNA gene predicted gene, 34147
Cpgi17320 6 39256501 to 39257587 1086 CpG island CpG island 17320
Gm26008 6 39265844 to 39265942 98 - snRNA gene predicted gene, 26008
Slc37a3 6 39334773 to 39377675 42902 - protein coding gene solute carrier family 37 (glycerol-3-phosphate transporter), member 3
D6Mit78 6 39342345 to 39342487 142 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 78
Cpgi17321 6 39344190 to 39344375 185 CpG island CpG island 17321
Tssr60467 6 39347421 to 39347440 19 - TSS region transcription start site region 60467
Cpgi17322 6 39377254 to 39377917 663 CpG island CpG island 17322
Tssr60468 6 39377614 to 39377631 17 - TSS region transcription start site region 60468
Tssr60469 6 39377641 to 39377678 37 - TSS region transcription start site region 60469
Tssr60470 6 39377681 to 39377710 29 - TSS region transcription start site region 60470
Tssr55718 6 39379974 to 39379995 21 + TSS region transcription start site region 55718
Tssr55719 6 39380021 to 39380047 26 + TSS region transcription start site region 55719
Tssr55720 6 39381102 to 39381117 15 + TSS region transcription start site region 55720
Rab19 6 39381175 to 39390380 9205 + protein coding gene RAB19, member RAS oncogene family
Tssr55721 6 39381347 to 39381366 19 + TSS region transcription start site region 55721
Tssr55722 6 39381386 to 39381411 25 + TSS region transcription start site region 55722
D6Mit1002 6 39393083 to 39393231 148 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 1002
Mkrn1 6 39397804 to 39420462 22658 - protein coding gene makorin, ring finger protein, 1
Tssr60471 6 39412221 to 39412223 2 - TSS region transcription start site region 60471
Cpgi17323 6 39419439 to 39420859 1420 CpG island CpG island 17323
Tssr60472 6 39419571 to 39419582 11 - TSS region transcription start site region 60472
Tssr60473 6 39419691 to 39419698 7 - TSS region transcription start site region 60473
Tssr60474 6 39419761 to 39419817 56 - TSS region transcription start site region 60474
Tssr60475 6 39419820 to 39419827 7 - TSS region transcription start site region 60475
Tssr55723 6 39419821 to 39419842 21 + TSS region transcription start site region 55723
Tssr60476 6 39419942 to 39419958 16 - TSS region transcription start site region 60476
Tssr60477 6 39419967 to 39420074 107 - TSS region transcription start site region 60477
Tssr60478 6 39420243 to 39420270 27 - TSS region transcription start site region 60478
Tssr60479 6 39420281 to 39420329 48 - TSS region transcription start site region 60479
Gm10244 6 39420378 to 39421294 916 + antisense lncRNA gene predicted gene 10244
Tssr60480 6 39420402 to 39420413 11 - TSS region transcription start site region 60480
Tssr60481 6 39420418 to 39420481 63 - TSS region transcription start site region 60481
Tssr60482 6 39420498 to 39420505 7 - TSS region transcription start site region 60482
Tssr55724 6 39420573 to 39420597 24 + TSS region transcription start site region 55724
Tssr60483 6 39420647 to 39420665 18 - TSS region transcription start site region 60483
Gm25402 6 39422289 to 39422419 130 - snoRNA gene predicted gene, 25402
Tssr60484 6 39423453 to 39423466 13 - TSS region transcription start site region 60484
Tssr55725 6 39431028 to 39431053 25 + TSS region transcription start site region 55725
Tssr55726 6 39437882 to 39437885 3 + TSS region transcription start site region 55726
Tssr55727 6 39442271 to 39442277 6 + TSS region transcription start site region 55727
Tssr60485 6 39445408 to 39445416 8 - TSS region transcription start site region 60485
Tssr60486 6 39445804 to 39445820 16 - TSS region transcription start site region 60486
Tssr55728 6 39446907 to 39446913 6 + TSS region transcription start site region 55728
Tssr60487 6 39447574 to 39447581 7 - TSS region transcription start site region 60487
Dennd2a 6 39462378 to 39557867 95489 - protein coding gene DENN/MADD domain containing 2A
Tssr60488 6 39527393 to 39527433 40 - TSS region transcription start site region 60488
8030453O22Rik 6 39527532 to 39544489 16957 + unclassified non-coding RNA gene RIKEN cDNA 8030453O22 gene
Tssr55729 6 39527535 to 39527550 15 + TSS region transcription start site region 55729
Cpgi17324 6 39556951 to 39558517 1566 CpG island CpG island 17324
Tssr60489 6 39557677 to 39557700 23 - TSS region transcription start site region 60489
Tssr60490 6 39557706 to 39557742 36 - TSS region transcription start site region 60490
Tssr60491 6 39557775 to 39557793 18 - TSS region transcription start site region 60491
Tssr60492 6 39557798 to 39557827 29 - TSS region transcription start site region 60492
Tssr60493 6 39557830 to 39557851 21 - TSS region transcription start site region 60493
Tssr60494 6 39558101 to 39558111 10 - TSS region transcription start site region 60494
Tssr60495 6 39558131 to 39558139 8 - TSS region transcription start site region 60495
Tssr60496 6 39558156 to 39558169 13 - TSS region transcription start site region 60496
D6Mit173 6 39573128 to 39573272 144 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 173
Cpgi17325 6 39573686 to 39574397 711 CpG island CpG island 17325
Tssr55730 6 39573858 to 39573887 29 + TSS region transcription start site region 55730
Adck2 6 39573873 to 39588769 14896 + protein coding gene aarF domain containing kinase 2
Tssr55731 6 39573894 to 39573940 46 + TSS region transcription start site region 55731
Gm16272 6 39584092 to 39592784 8692 - antisense lncRNA gene predicted gene 16272
Gm42420 6 39585753 to 39596595 10842 + protein coding gene predicted gene, 42420
Cpgi17326 6 39592285 to 39593099 814 CpG island CpG island 17326
Tssr60497 6 39592521 to 39592554 33 - TSS region transcription start site region 60497
Ndufb2 6 39592550 to 39599472 6922 + protein coding gene NADH:ubiquinone oxidoreductase subunit B2
Tssr55732 6 39592569 to 39592588 19 + TSS region transcription start site region 55732
Tssr55733 6 39592590 to 39592617 27 + TSS region transcription start site region 55733
Braf 6 39603237 to 39725463 122226 - protein coding gene Braf transforming gene
Tssr60498 6 39603689 to 39603712 23 - TSS region transcription start site region 60498
Tssr60499 6 39607666 to 39607670 4 - TSS region transcription start site region 60499
Gm34389 6 39616502 to 39625074 8572 + lncRNA gene predicted gene, 34389
D6Mit153 6 39637674 to 39637807 133 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 153
Tssr60500 6 39637869 to 39637880 11 - TSS region transcription start site region 60500
Fth-ps2 6 39653299 to 39653788 489 - pseudogene ferritin heavy chain, pseudogene 2
Tssr1816 6 39653799 to 39653804 5 + TSS region transcription start site region 1816
Tssr60501 6 39654112 to 39654117 5 - TSS region transcription start site region 60501
Tssr60502 6 39705723 to 39705771 48 - TSS region transcription start site region 60502
Tssr60503 6 39708836 to 39708840 4 - TSS region transcription start site region 60503
Cpgi17327 6 39724613 to 39725717 1104 CpG island CpG island 17327
Tssr60504 6 39725293 to 39725357 64 - TSS region transcription start site region 60504
Tssr60505 6 39725419 to 39725429 10 - TSS region transcription start site region 60505
Tssr60506 6 39725448 to 39725478 30 - TSS region transcription start site region 60506
Tssr60507 6 39725487 to 39725504 17 - TSS region transcription start site region 60507
Mrps33 6 39801804 to 39810936 9132 - protein coding gene mitochondrial ribosomal protein S33
5730402E23Rik 6 39810180 to 39810647 467 unclassified gene RIKEN cDNA 5730402E23 gene
Cpgi17328 6 39810511 to 39811215 704 CpG island CpG island 17328
Tssr60508 6 39810865 to 39810876 11 - TSS region transcription start site region 60508
Tssr60509 6 39810881 to 39810905 24 - TSS region transcription start site region 60509
Gm7554 6 39828200 to 39828773 573 - pseudogene predicted gene 7554
Gm7556 6 39843212 to 39844295 1083 - pseudogene predicted gene 7556
Tssr60510 6 39844357 to 39844401 44 - TSS region transcription start site region 60510
Cpgi17329 6 39871376 to 39873623 2247 CpG island CpG island 17329
Tssr55734 6 39871433 to 39871460 27 + TSS region transcription start site region 55734
Tssr55735 6 39871461 to 39871506 45 + TSS region transcription start site region 55735
Tssr55736 6 39871509 to 39871520 11 + TSS region transcription start site region 55736
Gm26833 6 39871532 to 39871971 439 - antisense lncRNA gene predicted gene, 26833
Tssr55737 6 39871551 to 39871560 9 + TSS region transcription start site region 55737
Tssr55738 6 39872208 to 39872219 11 + TSS region transcription start site region 55738
Tmem178b 6 39873271 to 40255150 381879 + protein coding gene transmembrane protein 178B
Tssr55739 6 39876864 to 39876867 3 + TSS region transcription start site region 55739
Tssr55740 6 39879617 to 39879622 5 + TSS region transcription start site region 55740
D6Mit161.1 6 39929287 to 39929422 135 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 161.1
D6Mit161 6 39929398 to 39929531 133 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 161
D6Mit239 6 39929402 to 39929526 124 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 239
D6Mit161.2 6 39929498 to 39929617 119 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 161.2
Gm37995 6 40026894 to 40028607 1713 + unclassified gene predicted gene, 37995
Tssr55741 6 40038280 to 40038285 5 + TSS region transcription start site region 55741
Tssr60511 6 40049669 to 40049717 48 - TSS region transcription start site region 60511
Gm37673 6 40098722 to 40101172 2450 + unclassified gene predicted gene, 37673
Gm26638 6 40118779 to 40129477 10698 + sense intronic lncRNA gene predicted gene, 26638
Gm26807 6 40203298 to 40209259 5961 - antisense lncRNA gene predicted gene, 26807
Tssr55742 6 40221811 to 40221823 12 + TSS region transcription start site region 55742
Gm37003 6 40226219 to 40229045 2826 + unclassified gene predicted gene, 37003
Agk 6 40325172 to 40396762 71590 + protein coding gene acylglycerol kinase
Cpgi17330 6 40325286 to 40325831 545 CpG island CpG island 17330
Tssr55743 6 40325471 to 40325501 30 + TSS region transcription start site region 55743
Tssr55744 6 40359905 to 40359940 35 + TSS region transcription start site region 55744
E330009J07Rik 6 40401375 to 40436135 34760 - protein coding gene RIKEN cDNA E330009J07 gene
Tssr60512 6 40401771 to 40401775 4 - TSS region transcription start site region 60512
Tssr60513 6 40431578 to 40431581 3 - TSS region transcription start site region 60513
Tssr60514 6 40435150 to 40435157 7 - TSS region transcription start site region 60514
Cpgi17331 6 40435155 to 40436464 1309 CpG island CpG island 17331
Tssr60515 6 40436078 to 40436088 10 - TSS region transcription start site region 60515
Tssr60516 6 40436089 to 40436101 12 - TSS region transcription start site region 60516
Tssr60517 6 40436104 to 40436151 47 - TSS region transcription start site region 60517
Wee2 6 40439088 to 40466813 27725 + protein coding gene WEE1 homolog 2 (S. pombe)