Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:38665904-39085920

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cia6b 6 34734663 to 38969603 4234940 QTL collagen induced arthritis QTL 6b
Clec2l 6 38663069 to 38680864 17795 + protein coding gene C-type lectin domain family 2, member L
Cplaq9 6 38669625 to 92607450 53937825 QTL circadian period of locomotor activity 9
D6Mit91 6 38669625 to 38669724 99 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 91
Tssr55680 6 38674653 to 38674655 2 + TSS region transcription start site region 55680
Cpgi17316 6 38676829 to 38676982 153 CpG island CpG island 17316
Tssr60419 6 38688022 to 38688032 10 - TSS region transcription start site region 60419
Tssr60420 6 38688108 to 38688132 24 - TSS region transcription start site region 60420
Tssr60421 6 38689045 to 38689073 28 - TSS region transcription start site region 60421
Tssr60422 6 38689531 to 38689555 24 - TSS region transcription start site region 60422
Tssr60423 6 38691876 to 38691899 23 - TSS region transcription start site region 60423
Tssr60424 6 38693039 to 38693041 2 - TSS region transcription start site region 60424
Tssr60425 6 38693489 to 38693520 31 - TSS region transcription start site region 60425
Hipk2 6 38694390 to 38876165 181775 - protein coding gene homeodomain interacting protein kinase 2
Tssr60426 6 38695441 to 38695469 28 - TSS region transcription start site region 60426
Gm38496 6 38699744 to 38741900 42156 + lncRNA gene predicted gene, 38496
Tssr55681 6 38702814 to 38702854 40 + TSS region transcription start site region 55681
Tssr60427 6 38703532 to 38703544 12 - TSS region transcription start site region 60427
Tssr60428 6 38716071 to 38716080 9 - TSS region transcription start site region 60428
Tssr60429 6 38737468 to 38737483 15 - TSS region transcription start site region 60429
Tssr60430 6 38745748 to 38745758 10 - TSS region transcription start site region 60430
4930502C15Rik 6 38752238 to 38780484 28246 + lncRNA gene RIKEN cDNA 4930502C15 gene
D6Mit80 6 38756863 to 38757001 138 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 80
Tssr60431 6 38782266 to 38782294 28 - TSS region transcription start site region 60431
Tssr60432 6 38819194 to 38819220 26 - TSS region transcription start site region 60432
Tssr60433 6 38819283 to 38819294 11 - TSS region transcription start site region 60433
Tssr60434 6 38837266 to 38837268 2 - TSS region transcription start site region 60434
Tssr60435 6 38837305 to 38837316 11 - TSS region transcription start site region 60435
Tssr55682 6 38843438 to 38843449 11 + TSS region transcription start site region 55682
Tssr60436 6 38863598 to 38863602 4 - TSS region transcription start site region 60436
Tssr55683 6 38874802 to 38874813 11 + TSS region transcription start site region 55683
Tbxas1 6 38875404 to 39084585 209181 + protein coding gene thromboxane A synthase 1, platelet
Cpgi17317 6 38875435 to 38877034 1599 CpG island CpG island 17317
Tssr60437 6 38875873 to 38875880 7 - TSS region transcription start site region 60437
Tssr60438 6 38875904 to 38875920 16 - TSS region transcription start site region 60438
Tssr60439 6 38875923 to 38875937 14 - TSS region transcription start site region 60439
Tssr60440 6 38875965 to 38875986 21 - TSS region transcription start site region 60440
Gm46988 6 38876111 to 38885050 8939 + protein coding gene predicted gene, 46988
Tssr60441 6 38876163 to 38876234 71 - TSS region transcription start site region 60441
Tssr60442 6 38876274 to 38876350 76 - TSS region transcription start site region 60442
Tssr60443 6 38876502 to 38876515 13 - TSS region transcription start site region 60443
Tssr60444 6 38876518 to 38876529 11 - TSS region transcription start site region 60444
Tssr60445 6 38876532 to 38876541 9 - TSS region transcription start site region 60445
Tssr55684 6 38892436 to 38892452 16 + TSS region transcription start site region 55684
Gm42962 6 38917098 to 38984325 67227 - antisense lncRNA gene predicted gene 42962
Tssr55685 6 38918461 to 38918474 13 + TSS region transcription start site region 55685
Tssr55686 6 38918953 to 38918960 7 + TSS region transcription start site region 55686
Tssr55687 6 38918969 to 38918995 26 + TSS region transcription start site region 55687
Tssr55688 6 38918996 to 38919029 33 + TSS region transcription start site region 55688
Tssr55689 6 38919042 to 38919054 12 + TSS region transcription start site region 55689
Tssr55690 6 38919061 to 38919074 13 + TSS region transcription start site region 55690
Tssr55691 6 38919089 to 38919100 11 + TSS region transcription start site region 55691
Tssr1815 6 38921505 to 38921513 8 + TSS region transcription start site region 1815
Tssr55692 6 38923167 to 38923171 4 + TSS region transcription start site region 55692
Tssr55693 6 38934071 to 38934084 13 + TSS region transcription start site region 55693
Tssr55694 6 38941317 to 38941328 11 + TSS region transcription start site region 55694
Tssr55695 6 38941373 to 38941386 13 + TSS region transcription start site region 55695
Tssr55696 6 38941393 to 38941408 15 + TSS region transcription start site region 55696
Gm33767 6 38944371 to 38950281 5910 - lncRNA gene predicted gene, 33767
Tssr55697 6 38950574 to 38950586 12 + TSS region transcription start site region 55697
Tssr55698 6 38951860 to 38951891 31 + TSS region transcription start site region 55698
D6Mit222 6 38957512 to 38957659 147 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 222
D6Mit90 6 38969475 to 38969603 128 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 90
Tssr55699 6 38980996 to 38981004 8 + TSS region transcription start site region 55699
Tssr55700 6 38983303 to 38983317 14 + TSS region transcription start site region 55700
Tssr55701 6 38983325 to 38983338 13 + TSS region transcription start site region 55701
Gm38688 6 38988836 to 39006437 17601 - lncRNA gene predicted gene, 38688
Tssr55702 6 39002685 to 39002697 12 + TSS region transcription start site region 55702
Tssr55703 6 39004035 to 39004050 15 + TSS region transcription start site region 55703
Gm23010 6 39013666 to 39013791 125 + snoRNA gene predicted gene, 23010
Gm38489 6 39019198 to 39043829 24631 - lncRNA gene predicted gene, 38489
Tssr55704 6 39021665 to 39021676 11 + TSS region transcription start site region 55704
Tssr55705 6 39024305 to 39024307 2 + TSS region transcription start site region 55705
Tssr55706 6 39033383 to 39033401 18 + TSS region transcription start site region 55706
Tssr55707 6 39033499 to 39033511 12 + TSS region transcription start site region 55707
Tssr55708 6 39035542 to 39035572 30 + TSS region transcription start site region 55708
Gm46989 6 39044166 to 39056520 12354 - lncRNA gene predicted gene, 46989
Tssr55709 6 39044384 to 39044397 13 + TSS region transcription start site region 55709
Tssr55710 6 39044399 to 39044411 12 + TSS region transcription start site region 55710
Tssr60446 6 39049050 to 39049064 14 - TSS region transcription start site region 60446
1700025N23Rik 6 39063879 to 39067586 3707 - antisense lncRNA gene RIKEN cDNA 1700025N23 gene
Tssr60447 6 39067580 to 39067591 11 - TSS region transcription start site region 60447
Tssr60448 6 39078128 to 39078133 5 - TSS region transcription start site region 60448