Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:38527098-39374325

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169 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cia6b 6 34734663 to 38969603 4234940 QTL collagen induced arthritis QTL 6b
Cpgi17311 6 38533405 to 38533816 411 CpG island CpG island 17311
Tssr60414 6 38533640 to 38533669 29 - TSS region transcription start site region 60414
n-TRcct1 6 38533931 to 38534003 72 + tRNA gene nuclear encoded tRNA arginine 1 (anticodon CCT)
Cpgi17312 6 38534558 to 38535491 933 CpG island CpG island 17312
Tssr55653 6 38534833 to 38534872 39 + TSS region transcription start site region 55653
Fmc1 6 38534861 to 38539449 4588 + protein coding gene formation of mitochondrial complex V assembly factor 1
Gm15697 6 38542303 to 38546074 3771 - pseudogene predicted gene 15697
D630014H12Rik 6 38550424 to 38551252 828 unclassified gene RIKEN cDNA D630014H12 gene
Cpgi17313 6 38550663 to 38552315 1652 CpG island CpG island 17313
Tssr55654 6 38550773 to 38550807 34 + TSS region transcription start site region 55654
Tssr60415 6 38551212 to 38551256 44 - TSS region transcription start site region 60415
Luc7l2 6 38551334 to 38609470 58136 + protein coding gene LUC7-like 2 (S. cerevisiae)
Tssr55655 6 38551432 to 38551493 61 + TSS region transcription start site region 55655
Tssr55656 6 38551503 to 38551536 33 + TSS region transcription start site region 55656
Gm26699 6 38551531 to 38554007 2476 - lincRNA gene predicted gene, 26699
Tssr55657 6 38551537 to 38551550 13 + TSS region transcription start site region 55657
Tssr55658 6 38551556 to 38551569 13 + TSS region transcription start site region 55658
Tssr55659 6 38551786 to 38551851 65 + TSS region transcription start site region 55659
Tssr60416 6 38551992 to 38552027 35 - TSS region transcription start site region 60416
Tssr55660 6 38552892 to 38552896 4 + TSS region transcription start site region 55660
Tssr55661 6 38557047 to 38557066 19 + TSS region transcription start site region 55661
Tssr55662 6 38558948 to 38558962 14 + TSS region transcription start site region 55662
Tssr55663 6 38560216 to 38560236 20 + TSS region transcription start site region 55663
Tssr55664 6 38561229 to 38561236 7 + TSS region transcription start site region 55664
Tssr55665 6 38562263 to 38562297 34 + TSS region transcription start site region 55665
Tssr55666 6 38567527 to 38567531 4 + TSS region transcription start site region 55666
Tssr55667 6 38577036 to 38577041 5 + TSS region transcription start site region 55667
Tssr55668 6 38581981 to 38581990 9 + TSS region transcription start site region 55668
Tssr55669 6 38585810 to 38585819 9 + TSS region transcription start site region 55669
Tssr55670 6 38592736 to 38592748 12 + TSS region transcription start site region 55670
Tssr55671 6 38592937 to 38592940 3 + TSS region transcription start site region 55671
Tssr55672 6 38595632 to 38595641 9 + TSS region transcription start site region 55672
Tssr55673 6 38605115 to 38605120 5 + TSS region transcription start site region 55673
Tssr55674 6 38608969 to 38608976 7 + TSS region transcription start site region 55674
Tssr55675 6 38609015 to 38609023 8 + TSS region transcription start site region 55675
9330153N18Rik 6 38610048 to 38610963 915 unclassified gene RIKEN cDNA 9330153N18 gene
Tssr55676 6 38611111 to 38611121 10 + TSS region transcription start site region 55676
Klrg2 6 38625693 to 38637242 11549 - protein coding gene killer cell lectin-like receptor subfamily G, member 2
Cpgi17314 6 38636001 to 38637497 1496 CpG island CpG island 17314
Tssr60417 6 38637173 to 38637214 41 - TSS region transcription start site region 60417
Tssr60418 6 38637220 to 38637247 27 - TSS region transcription start site region 60418
Cpgi17315 6 38662639 to 38663817 1178 CpG island CpG island 17315
Tssr55677 6 38663019 to 38663060 41 + TSS region transcription start site region 55677
Tssr55678 6 38663061 to 38663119 58 + TSS region transcription start site region 55678
Clec2l 6 38663069 to 38680864 17795 + protein coding gene C-type lectin domain family 2, member L
Tssr55679 6 38663278 to 38663296 18 + TSS region transcription start site region 55679
D6Mit91 6 38669625 to 38669724 99 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 91
Cplaq9 6 38669625 to 92607450 53937825 QTL circadian period of locomotor activity 9
Tssr55680 6 38674653 to 38674655 2 + TSS region transcription start site region 55680
Cpgi17316 6 38676829 to 38676982 153 CpG island CpG island 17316
Tssr60419 6 38688022 to 38688032 10 - TSS region transcription start site region 60419
Tssr60420 6 38688108 to 38688132 24 - TSS region transcription start site region 60420
Tssr60421 6 38689045 to 38689073 28 - TSS region transcription start site region 60421
Tssr60422 6 38689531 to 38689555 24 - TSS region transcription start site region 60422
Tssr60423 6 38691876 to 38691899 23 - TSS region transcription start site region 60423
Tssr60424 6 38693039 to 38693041 2 - TSS region transcription start site region 60424
Tssr60425 6 38693489 to 38693520 31 - TSS region transcription start site region 60425
Hipk2 6 38694390 to 38876165 181775 - protein coding gene homeodomain interacting protein kinase 2
Tssr60426 6 38695441 to 38695469 28 - TSS region transcription start site region 60426
Gm38496 6 38699744 to 38741900 42156 + lncRNA gene predicted gene, 38496
Tssr55681 6 38702814 to 38702854 40 + TSS region transcription start site region 55681
Tssr60427 6 38703532 to 38703544 12 - TSS region transcription start site region 60427
Tssr60428 6 38716071 to 38716080 9 - TSS region transcription start site region 60428
Tssr60429 6 38737468 to 38737483 15 - TSS region transcription start site region 60429
Tssr60430 6 38745748 to 38745758 10 - TSS region transcription start site region 60430
4930502C15Rik 6 38752238 to 38780484 28246 + lncRNA gene RIKEN cDNA 4930502C15 gene
D6Mit80 6 38756863 to 38757001 138 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 80
Tssr60431 6 38782266 to 38782294 28 - TSS region transcription start site region 60431
Tssr60432 6 38819194 to 38819220 26 - TSS region transcription start site region 60432
Tssr60433 6 38819283 to 38819294 11 - TSS region transcription start site region 60433
Tssr60434 6 38837266 to 38837268 2 - TSS region transcription start site region 60434
Tssr60435 6 38837305 to 38837316 11 - TSS region transcription start site region 60435
Tssr55682 6 38843438 to 38843449 11 + TSS region transcription start site region 55682
Tssr60436 6 38863598 to 38863602 4 - TSS region transcription start site region 60436
Tssr55683 6 38874802 to 38874813 11 + TSS region transcription start site region 55683
Tbxas1 6 38875404 to 39084585 209181 + protein coding gene thromboxane A synthase 1, platelet
Cpgi17317 6 38875435 to 38877034 1599 CpG island CpG island 17317
Tssr60437 6 38875873 to 38875880 7 - TSS region transcription start site region 60437
Tssr60438 6 38875904 to 38875920 16 - TSS region transcription start site region 60438
Tssr60439 6 38875923 to 38875937 14 - TSS region transcription start site region 60439
Tssr60440 6 38875965 to 38875986 21 - TSS region transcription start site region 60440
Gm46988 6 38876111 to 38885050 8939 + protein coding gene predicted gene, 46988
Tssr60441 6 38876163 to 38876234 71 - TSS region transcription start site region 60441
Tssr60442 6 38876274 to 38876350 76 - TSS region transcription start site region 60442
Tssr60443 6 38876502 to 38876515 13 - TSS region transcription start site region 60443
Tssr60444 6 38876518 to 38876529 11 - TSS region transcription start site region 60444
Tssr60445 6 38876532 to 38876541 9 - TSS region transcription start site region 60445
Tssr55684 6 38892436 to 38892452 16 + TSS region transcription start site region 55684
Gm42962 6 38917098 to 38984325 67227 - antisense lncRNA gene predicted gene 42962
Tssr55685 6 38918461 to 38918474 13 + TSS region transcription start site region 55685
Tssr55686 6 38918953 to 38918960 7 + TSS region transcription start site region 55686
Tssr55687 6 38918969 to 38918995 26 + TSS region transcription start site region 55687
Tssr55688 6 38918996 to 38919029 33 + TSS region transcription start site region 55688
Tssr55689 6 38919042 to 38919054 12 + TSS region transcription start site region 55689
Tssr55690 6 38919061 to 38919074 13 + TSS region transcription start site region 55690
Tssr55691 6 38919089 to 38919100 11 + TSS region transcription start site region 55691
Tssr1815 6 38921505 to 38921513 8 + TSS region transcription start site region 1815
Tssr55692 6 38923167 to 38923171 4 + TSS region transcription start site region 55692
Tssr55693 6 38934071 to 38934084 13 + TSS region transcription start site region 55693
Tssr55694 6 38941317 to 38941328 11 + TSS region transcription start site region 55694
Tssr55695 6 38941373 to 38941386 13 + TSS region transcription start site region 55695
Tssr55696 6 38941393 to 38941408 15 + TSS region transcription start site region 55696
Gm33767 6 38944371 to 38950281 5910 - lncRNA gene predicted gene, 33767
Tssr55697 6 38950574 to 38950586 12 + TSS region transcription start site region 55697
Tssr55698 6 38951860 to 38951891 31 + TSS region transcription start site region 55698
D6Mit222 6 38957512 to 38957659 147 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 222
D6Mit90 6 38969475 to 38969603 128 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 90
Tssr55699 6 38980996 to 38981004 8 + TSS region transcription start site region 55699
Tssr55700 6 38983303 to 38983317 14 + TSS region transcription start site region 55700
Tssr55701 6 38983325 to 38983338 13 + TSS region transcription start site region 55701
Gm38688 6 38988836 to 39006437 17601 - lncRNA gene predicted gene, 38688
Tssr55702 6 39002685 to 39002697 12 + TSS region transcription start site region 55702
Tssr55703 6 39004035 to 39004050 15 + TSS region transcription start site region 55703
Gm23010 6 39013666 to 39013791 125 + snoRNA gene predicted gene, 23010
Gm38489 6 39019198 to 39043829 24631 - lncRNA gene predicted gene, 38489
Tssr55704 6 39021665 to 39021676 11 + TSS region transcription start site region 55704
Tssr55705 6 39024305 to 39024307 2 + TSS region transcription start site region 55705
Tssr55706 6 39033383 to 39033401 18 + TSS region transcription start site region 55706
Tssr55707 6 39033499 to 39033511 12 + TSS region transcription start site region 55707
Tssr55708 6 39035542 to 39035572 30 + TSS region transcription start site region 55708
Gm46989 6 39044166 to 39056520 12354 - lncRNA gene predicted gene, 46989
Tssr55709 6 39044384 to 39044397 13 + TSS region transcription start site region 55709
Tssr55710 6 39044399 to 39044411 12 + TSS region transcription start site region 55710
Tssr60446 6 39049050 to 39049064 14 - TSS region transcription start site region 60446
1700025N23Rik 6 39063879 to 39067586 3707 - antisense lncRNA gene RIKEN cDNA 1700025N23 gene
Tssr60447 6 39067580 to 39067591 11 - TSS region transcription start site region 60447
Tssr60448 6 39078128 to 39078133 5 - TSS region transcription start site region 60448
Parp12 6 39086412 to 39118349 31937 - protein coding gene poly (ADP-ribose) polymerase family, member 12
Tssr60449 6 39087521 to 39087540 19 - TSS region transcription start site region 60449
Tssr60450 6 39087629 to 39087643 14 - TSS region transcription start site region 60450
Tssr60451 6 39089006 to 39089020 14 - TSS region transcription start site region 60451
Cpgi17318 6 39117531 to 39119047 1516 CpG island CpG island 17318
Tssr60452 6 39118164 to 39118177 13 - TSS region transcription start site region 60452
Tssr60453 6 39118182 to 39118207 25 - TSS region transcription start site region 60453
Tssr60454 6 39118211 to 39118252 41 - TSS region transcription start site region 60454
Tssr55711 6 39118268 to 39118342 74 + TSS region transcription start site region 55711
4930599N23Rik 6 39118473 to 39148312 29839 + antisense lncRNA gene RIKEN cDNA 4930599N23 gene
Gm42963 6 39125165 to 39126381 1216 - unclassified gene predicted gene 42963
Tssr55712 6 39126619 to 39126644 25 + TSS region transcription start site region 55712
Kdm7a 6 39136620 to 39206773 70153 - protein coding gene lysine (K)-specific demethylase 7A
Tssr55713 6 39150921 to 39150932 11 + TSS region transcription start site region 55713
Tssr60455 6 39165030 to 39165036 6 - TSS region transcription start site region 60455
Tssr60456 6 39196682 to 39196720 38 - TSS region transcription start site region 60456
Tssr60457 6 39202994 to 39202998 4 - TSS region transcription start site region 60457
Cpgi17319 6 39205261 to 39207474 2213 CpG island CpG island 17319
Tssr55714 6 39205494 to 39205506 12 + TSS region transcription start site region 55714
Tssr55715 6 39205512 to 39205526 14 + TSS region transcription start site region 55715
Tssr55716 6 39205536 to 39205547 11 + TSS region transcription start site region 55716
Tssr60458 6 39206631 to 39206662 31 - TSS region transcription start site region 60458
Tssr60459 6 39206668 to 39206685 17 - TSS region transcription start site region 60459
Tssr60460 6 39206709 to 39206750 41 - TSS region transcription start site region 60460
Tssr60461 6 39206782 to 39206831 49 - TSS region transcription start site region 60461
Gm49041 6 39207068 to 39207611 543 + bidirectional promoter lncRNA gene predicted gene, 49041
Tssr60462 6 39207150 to 39207161 11 - TSS region transcription start site region 60462
Tssr60463 6 39207171 to 39207211 40 - TSS region transcription start site region 60463
Tssr60464 6 39207331 to 39207366 35 - TSS region transcription start site region 60464
Tssr60465 6 39207468 to 39207479 11 - TSS region transcription start site region 60465
Tssr55717 6 39226465 to 39226499 34 + TSS region transcription start site region 55717
Gm38794 6 39227565 to 39245345 17780 + lncRNA gene predicted gene, 38794
Gm43479 6 39240114 to 39242541 2427 + lincRNA gene predicted gene 43479
Tssr60466 6 39241672 to 39241691 19 - TSS region transcription start site region 60466
Gm34147 6 39246153 to 39265611 19458 - lncRNA gene predicted gene, 34147
Cpgi17320 6 39256501 to 39257587 1086 CpG island CpG island 17320
Gm26008 6 39265844 to 39265942 98 - snRNA gene predicted gene, 26008
Slc37a3 6 39334773 to 39377675 42902 - protein coding gene solute carrier family 37 (glycerol-3-phosphate transporter), member 3
D6Mit78 6 39342345 to 39342487 142 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 78
Cpgi17321 6 39344190 to 39344375 185 CpG island CpG island 17321
Tssr60467 6 39347421 to 39347440 19 - TSS region transcription start site region 60467