Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:38328851-38538863

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52 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zc3hav1 6 38305286 to 38354603 49317 - protein coding gene zinc finger CCCH type, antiviral 1
Tssr60400 6 38341200 to 38341205 5 - TSS region transcription start site region 60400
Tssr60401 6 38341855 to 38341869 14 - TSS region transcription start site region 60401
Tssr60402 6 38343066 to 38343074 8 - TSS region transcription start site region 60402
Tssr60403 6 38345926 to 38345938 12 - TSS region transcription start site region 60403
Tssr55635 6 38346051 to 38346052 1 + TSS region transcription start site region 55635
Tssr60404 6 38350641 to 38350647 6 - TSS region transcription start site region 60404
Tssr55636 6 38352521 to 38352534 13 + TSS region transcription start site region 55636
Cpgi17308 6 38353775 to 38354913 1138 CpG island CpG island 17308
Tssr60405 6 38354102 to 38354137 35 - TSS region transcription start site region 60405
Tssr60406 6 38354231 to 38354240 9 - TSS region transcription start site region 60406
Tssr60407 6 38354243 to 38354292 49 - TSS region transcription start site region 60407
Tssr60408 6 38354547 to 38354565 18 - TSS region transcription start site region 60408
Tssr60409 6 38354601 to 38354604 3 - TSS region transcription start site region 60409
Tssr55637 6 38354659 to 38354673 14 + TSS region transcription start site region 55637
Tssr55638 6 38354687 to 38354702 15 + TSS region transcription start site region 55638
Tssr55639 6 38354706 to 38354719 13 + TSS region transcription start site region 55639
Tssr55640 6 38354753 to 38354767 14 + TSS region transcription start site region 55640
Tssr55641 6 38354768 to 38354780 12 + TSS region transcription start site region 55641
Tssr55642 6 38354913 to 38354923 10 + TSS region transcription start site region 55642
Tssr60410 6 38355520 to 38355531 11 - TSS region transcription start site region 60410
Tssr60411 6 38355533 to 38355551 18 - TSS region transcription start site region 60411
Gm43578 6 38365232 to 38365902 670 - pseudogene predicted gene 43578
Tssr55643 6 38369366 to 38369372 6 + TSS region transcription start site region 55643
Tssr55644 6 38376734 to 38376738 4 + TSS region transcription start site region 55644
Rpl30-ps1 6 38376807 to 38377154 347 + pseudogene ribosomal protein L30, pseudogene 1
D0Nds34 6 38377121 to 38377275 154 DNA segment DNA segment, Nuffield Department of Surgery 34
Cpgi17309 6 38381424 to 38381615 191 CpG island CpG island 17309
Ttc26 6 38381474 to 38427647 46173 + protein coding gene tetratricopeptide repeat domain 26
Tssr55645 6 38381484 to 38381528 44 + TSS region transcription start site region 55645
Gm16563 6 38396267 to 38396689 422 + pseudogene predicted gene 16563
1700021L22Rik 6 38433036 to 38433782 746 unclassified gene RIKEN cDNA 1700021L22 gene
Cpgi17310 6 38433140 to 38435076 1936 CpG island CpG island 17310
Tssr60412 6 38433643 to 38433661 18 - TSS region transcription start site region 60412
Tssr60413 6 38433719 to 38433732 13 - TSS region transcription start site region 60413
Tssr55646 6 38433851 to 38433863 12 + TSS region transcription start site region 55646
Tssr55647 6 38433869 to 38433882 13 + TSS region transcription start site region 55647
Tssr55648 6 38433913 to 38433965 52 + TSS region transcription start site region 55648
Ubn2 6 38433925 to 38512763 78838 + protein coding gene ubinuclein 2
Tssr55649 6 38434336 to 38434382 46 + TSS region transcription start site region 55649
Tssr55650 6 38441954 to 38441958 4 + TSS region transcription start site region 55650
E430026H10Rik 6 38445358 to 38447048 1690 unclassified gene RIKEN cDNA E430026H10 gene
Tssr55651 6 38501826 to 38501830 4 + TSS region transcription start site region 55651
Mir7670 6 38507325 to 38507393 68 + miRNA gene microRNA 7670
D6Mit154 6 38512024 to 38512131 107 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 154
Tssr55652 6 38513937 to 38513947 10 + TSS region transcription start site region 55652
Cpgi17311 6 38533405 to 38533816 411 CpG island CpG island 17311
Tssr60414 6 38533640 to 38533669 29 - TSS region transcription start site region 60414
n-TRcct1 6 38533931 to 38534003 72 + tRNA gene nuclear encoded tRNA arginine 1 (anticodon CCT)
Cpgi17312 6 38534558 to 38535491 933 CpG island CpG island 17312
Tssr55653 6 38534833 to 38534872 39 + TSS region transcription start site region 55653
Fmc1 6 38534861 to 38539449 4588 + protein coding gene formation of mitochondrial complex V assembly factor 1