Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:38225693-39037242

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186 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cia6b 6 34734663 to 38969603 4234940 QTL collagen induced arthritis QTL 6b
D630045J12Rik 6 38123174 to 38254009 130835 - protein coding gene RIKEN cDNA D630045J12 gene
Cpgi17306 6 38253415 to 38254763 1348 CpG island CpG island 17306
Tssr60387 6 38254087 to 38254108 21 - TSS region transcription start site region 60387
Tssr60388 6 38254109 to 38254155 46 - TSS region transcription start site region 60388
Tssr60389 6 38254214 to 38254267 53 - TSS region transcription start site region 60389
Tssr60390 6 38254274 to 38254327 53 - TSS region transcription start site region 60390
Tssr55634 6 38284470 to 38284472 2 + TSS region transcription start site region 55634
Gm7504 6 38284526 to 38284949 423 + pseudogene predicted gene 7504
Zc3hav1l 6 38287396 to 38299259 11863 - protein coding gene zinc finger CCCH-type, antiviral 1-like
Cpgi17307 6 38298426 to 38299546 1120 CpG island CpG island 17307
Tssr60391 6 38299222 to 38299233 11 - TSS region transcription start site region 60391
Tssr60392 6 38299236 to 38299290 54 - TSS region transcription start site region 60392
Zc3hav1 6 38305286 to 38354603 49317 - protein coding gene zinc finger CCCH type, antiviral 1
Tssr60393 6 38306303 to 38306305 2 - TSS region transcription start site region 60393
Tssr60394 6 38306685 to 38306692 7 - TSS region transcription start site region 60394
Tssr60395 6 38306749 to 38306768 19 - TSS region transcription start site region 60395
Tssr60396 6 38307252 to 38307311 59 - TSS region transcription start site region 60396
Tssr60397 6 38308264 to 38308267 3 - TSS region transcription start site region 60397
Tssr60398 6 38311686 to 38311697 11 - TSS region transcription start site region 60398
Tssr60399 6 38319745 to 38319758 13 - TSS region transcription start site region 60399
Tssr60400 6 38341200 to 38341205 5 - TSS region transcription start site region 60400
Tssr60401 6 38341855 to 38341869 14 - TSS region transcription start site region 60401
Tssr60402 6 38343066 to 38343074 8 - TSS region transcription start site region 60402
Tssr60403 6 38345926 to 38345938 12 - TSS region transcription start site region 60403
Tssr55635 6 38346051 to 38346052 1 + TSS region transcription start site region 55635
Tssr60404 6 38350641 to 38350647 6 - TSS region transcription start site region 60404
Tssr55636 6 38352521 to 38352534 13 + TSS region transcription start site region 55636
Cpgi17308 6 38353775 to 38354913 1138 CpG island CpG island 17308
Tssr60405 6 38354102 to 38354137 35 - TSS region transcription start site region 60405
Tssr60406 6 38354231 to 38354240 9 - TSS region transcription start site region 60406
Tssr60407 6 38354243 to 38354292 49 - TSS region transcription start site region 60407
Tssr60408 6 38354547 to 38354565 18 - TSS region transcription start site region 60408
Tssr60409 6 38354601 to 38354604 3 - TSS region transcription start site region 60409
Tssr55637 6 38354659 to 38354673 14 + TSS region transcription start site region 55637
Tssr55638 6 38354687 to 38354702 15 + TSS region transcription start site region 55638
Tssr55639 6 38354706 to 38354719 13 + TSS region transcription start site region 55639
Tssr55640 6 38354753 to 38354767 14 + TSS region transcription start site region 55640
Tssr55641 6 38354768 to 38354780 12 + TSS region transcription start site region 55641
Tssr55642 6 38354913 to 38354923 10 + TSS region transcription start site region 55642
Tssr60410 6 38355520 to 38355531 11 - TSS region transcription start site region 60410
Tssr60411 6 38355533 to 38355551 18 - TSS region transcription start site region 60411
Gm43578 6 38365232 to 38365902 670 - pseudogene predicted gene 43578
Tssr55643 6 38369366 to 38369372 6 + TSS region transcription start site region 55643
Tssr55644 6 38376734 to 38376738 4 + TSS region transcription start site region 55644
Rpl30-ps1 6 38376807 to 38377154 347 + pseudogene ribosomal protein L30, pseudogene 1
D0Nds34 6 38377121 to 38377275 154 DNA segment DNA segment, Nuffield Department of Surgery 34
Cpgi17309 6 38381424 to 38381615 191 CpG island CpG island 17309
Ttc26 6 38381474 to 38427647 46173 + protein coding gene tetratricopeptide repeat domain 26
Tssr55645 6 38381484 to 38381528 44 + TSS region transcription start site region 55645
Gm16563 6 38396267 to 38396689 422 + pseudogene predicted gene 16563
1700021L22Rik 6 38433036 to 38433782 746 unclassified gene RIKEN cDNA 1700021L22 gene
Cpgi17310 6 38433140 to 38435076 1936 CpG island CpG island 17310
Tssr60412 6 38433643 to 38433661 18 - TSS region transcription start site region 60412
Tssr60413 6 38433719 to 38433732 13 - TSS region transcription start site region 60413
Tssr55646 6 38433851 to 38433863 12 + TSS region transcription start site region 55646
Tssr55647 6 38433869 to 38433882 13 + TSS region transcription start site region 55647
Tssr55648 6 38433913 to 38433965 52 + TSS region transcription start site region 55648
Ubn2 6 38433925 to 38512763 78838 + protein coding gene ubinuclein 2
Tssr55649 6 38434336 to 38434382 46 + TSS region transcription start site region 55649
Tssr55650 6 38441954 to 38441958 4 + TSS region transcription start site region 55650
E430026H10Rik 6 38445358 to 38447048 1690 unclassified gene RIKEN cDNA E430026H10 gene
Tssr55651 6 38501826 to 38501830 4 + TSS region transcription start site region 55651
Mir7670 6 38507325 to 38507393 68 + miRNA gene microRNA 7670
D6Mit154 6 38512024 to 38512131 107 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 154
Tssr55652 6 38513937 to 38513947 10 + TSS region transcription start site region 55652
Cpgi17311 6 38533405 to 38533816 411 CpG island CpG island 17311
Tssr60414 6 38533640 to 38533669 29 - TSS region transcription start site region 60414
n-TRcct1 6 38533931 to 38534003 72 + tRNA gene nuclear encoded tRNA arginine 1 (anticodon CCT)
Cpgi17312 6 38534558 to 38535491 933 CpG island CpG island 17312
Tssr55653 6 38534833 to 38534872 39 + TSS region transcription start site region 55653
Fmc1 6 38534861 to 38539449 4588 + protein coding gene formation of mitochondrial complex V assembly factor 1
Gm15697 6 38542303 to 38546074 3771 - pseudogene predicted gene 15697
D630014H12Rik 6 38550424 to 38551252 828 unclassified gene RIKEN cDNA D630014H12 gene
Cpgi17313 6 38550663 to 38552315 1652 CpG island CpG island 17313
Tssr55654 6 38550773 to 38550807 34 + TSS region transcription start site region 55654
Tssr60415 6 38551212 to 38551256 44 - TSS region transcription start site region 60415
Luc7l2 6 38551334 to 38609470 58136 + protein coding gene LUC7-like 2 (S. cerevisiae)
Tssr55655 6 38551432 to 38551493 61 + TSS region transcription start site region 55655
Tssr55656 6 38551503 to 38551536 33 + TSS region transcription start site region 55656
Gm26699 6 38551531 to 38554007 2476 - lincRNA gene predicted gene, 26699
Tssr55657 6 38551537 to 38551550 13 + TSS region transcription start site region 55657
Tssr55658 6 38551556 to 38551569 13 + TSS region transcription start site region 55658
Tssr55659 6 38551786 to 38551851 65 + TSS region transcription start site region 55659
Tssr60416 6 38551992 to 38552027 35 - TSS region transcription start site region 60416
Tssr55660 6 38552892 to 38552896 4 + TSS region transcription start site region 55660
Tssr55661 6 38557047 to 38557066 19 + TSS region transcription start site region 55661
Tssr55662 6 38558948 to 38558962 14 + TSS region transcription start site region 55662
Tssr55663 6 38560216 to 38560236 20 + TSS region transcription start site region 55663
Tssr55664 6 38561229 to 38561236 7 + TSS region transcription start site region 55664
Tssr55665 6 38562263 to 38562297 34 + TSS region transcription start site region 55665
Tssr55666 6 38567527 to 38567531 4 + TSS region transcription start site region 55666
Tssr55667 6 38577036 to 38577041 5 + TSS region transcription start site region 55667
Tssr55668 6 38581981 to 38581990 9 + TSS region transcription start site region 55668
Tssr55669 6 38585810 to 38585819 9 + TSS region transcription start site region 55669
Tssr55670 6 38592736 to 38592748 12 + TSS region transcription start site region 55670
Tssr55671 6 38592937 to 38592940 3 + TSS region transcription start site region 55671
Tssr55672 6 38595632 to 38595641 9 + TSS region transcription start site region 55672
Tssr55673 6 38605115 to 38605120 5 + TSS region transcription start site region 55673
Tssr55674 6 38608969 to 38608976 7 + TSS region transcription start site region 55674
Tssr55675 6 38609015 to 38609023 8 + TSS region transcription start site region 55675
9330153N18Rik 6 38610048 to 38610963 915 unclassified gene RIKEN cDNA 9330153N18 gene
Tssr55676 6 38611111 to 38611121 10 + TSS region transcription start site region 55676
Klrg2 6 38625693 to 38637242 11549 - protein coding gene killer cell lectin-like receptor subfamily G, member 2
Cpgi17314 6 38636001 to 38637497 1496 CpG island CpG island 17314
Tssr60417 6 38637173 to 38637214 41 - TSS region transcription start site region 60417
Tssr60418 6 38637220 to 38637247 27 - TSS region transcription start site region 60418
Cpgi17315 6 38662639 to 38663817 1178 CpG island CpG island 17315
Tssr55677 6 38663019 to 38663060 41 + TSS region transcription start site region 55677
Tssr55678 6 38663061 to 38663119 58 + TSS region transcription start site region 55678
Clec2l 6 38663069 to 38680864 17795 + protein coding gene C-type lectin domain family 2, member L
Tssr55679 6 38663278 to 38663296 18 + TSS region transcription start site region 55679
D6Mit91 6 38669625 to 38669724 99 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 91
Cplaq9 6 38669625 to 92607450 53937825 QTL circadian period of locomotor activity 9
Tssr55680 6 38674653 to 38674655 2 + TSS region transcription start site region 55680
Cpgi17316 6 38676829 to 38676982 153 CpG island CpG island 17316
Tssr60419 6 38688022 to 38688032 10 - TSS region transcription start site region 60419
Tssr60420 6 38688108 to 38688132 24 - TSS region transcription start site region 60420
Tssr60421 6 38689045 to 38689073 28 - TSS region transcription start site region 60421
Tssr60422 6 38689531 to 38689555 24 - TSS region transcription start site region 60422
Tssr60423 6 38691876 to 38691899 23 - TSS region transcription start site region 60423
Tssr60424 6 38693039 to 38693041 2 - TSS region transcription start site region 60424
Tssr60425 6 38693489 to 38693520 31 - TSS region transcription start site region 60425
Hipk2 6 38694390 to 38876165 181775 - protein coding gene homeodomain interacting protein kinase 2
Tssr60426 6 38695441 to 38695469 28 - TSS region transcription start site region 60426
Gm38496 6 38699744 to 38741900 42156 + lncRNA gene predicted gene, 38496
Tssr55681 6 38702814 to 38702854 40 + TSS region transcription start site region 55681
Tssr60427 6 38703532 to 38703544 12 - TSS region transcription start site region 60427
Tssr60428 6 38716071 to 38716080 9 - TSS region transcription start site region 60428
Tssr60429 6 38737468 to 38737483 15 - TSS region transcription start site region 60429
Tssr60430 6 38745748 to 38745758 10 - TSS region transcription start site region 60430
4930502C15Rik 6 38752238 to 38780484 28246 + lncRNA gene RIKEN cDNA 4930502C15 gene
D6Mit80 6 38756863 to 38757001 138 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 80
Tssr60431 6 38782266 to 38782294 28 - TSS region transcription start site region 60431
Tssr60432 6 38819194 to 38819220 26 - TSS region transcription start site region 60432
Tssr60433 6 38819283 to 38819294 11 - TSS region transcription start site region 60433
Tssr60434 6 38837266 to 38837268 2 - TSS region transcription start site region 60434
Tssr60435 6 38837305 to 38837316 11 - TSS region transcription start site region 60435
Tssr55682 6 38843438 to 38843449 11 + TSS region transcription start site region 55682
Tssr60436 6 38863598 to 38863602 4 - TSS region transcription start site region 60436
Tssr55683 6 38874802 to 38874813 11 + TSS region transcription start site region 55683
Tbxas1 6 38875404 to 39084585 209181 + protein coding gene thromboxane A synthase 1, platelet
Cpgi17317 6 38875435 to 38877034 1599 CpG island CpG island 17317
Tssr60437 6 38875873 to 38875880 7 - TSS region transcription start site region 60437
Tssr60438 6 38875904 to 38875920 16 - TSS region transcription start site region 60438
Tssr60439 6 38875923 to 38875937 14 - TSS region transcription start site region 60439
Tssr60440 6 38875965 to 38875986 21 - TSS region transcription start site region 60440
Gm46988 6 38876111 to 38885050 8939 + protein coding gene predicted gene, 46988
Tssr60441 6 38876163 to 38876234 71 - TSS region transcription start site region 60441
Tssr60442 6 38876274 to 38876350 76 - TSS region transcription start site region 60442
Tssr60443 6 38876502 to 38876515 13 - TSS region transcription start site region 60443
Tssr60444 6 38876518 to 38876529 11 - TSS region transcription start site region 60444
Tssr60445 6 38876532 to 38876541 9 - TSS region transcription start site region 60445
Tssr55684 6 38892436 to 38892452 16 + TSS region transcription start site region 55684
Gm42962 6 38917098 to 38984325 67227 - antisense lncRNA gene predicted gene 42962
Tssr55685 6 38918461 to 38918474 13 + TSS region transcription start site region 55685
Tssr55686 6 38918953 to 38918960 7 + TSS region transcription start site region 55686
Tssr55687 6 38918969 to 38918995 26 + TSS region transcription start site region 55687
Tssr55688 6 38918996 to 38919029 33 + TSS region transcription start site region 55688
Tssr55689 6 38919042 to 38919054 12 + TSS region transcription start site region 55689
Tssr55690 6 38919061 to 38919074 13 + TSS region transcription start site region 55690
Tssr55691 6 38919089 to 38919100 11 + TSS region transcription start site region 55691
Tssr1815 6 38921505 to 38921513 8 + TSS region transcription start site region 1815
Tssr55692 6 38923167 to 38923171 4 + TSS region transcription start site region 55692
Tssr55693 6 38934071 to 38934084 13 + TSS region transcription start site region 55693
Tssr55694 6 38941317 to 38941328 11 + TSS region transcription start site region 55694
Tssr55695 6 38941373 to 38941386 13 + TSS region transcription start site region 55695
Tssr55696 6 38941393 to 38941408 15 + TSS region transcription start site region 55696
Gm33767 6 38944371 to 38950281 5910 - lncRNA gene predicted gene, 33767
Tssr55697 6 38950574 to 38950586 12 + TSS region transcription start site region 55697
Tssr55698 6 38951860 to 38951891 31 + TSS region transcription start site region 55698
D6Mit222 6 38957512 to 38957659 147 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 222
D6Mit90 6 38969475 to 38969603 128 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 90
Tssr55699 6 38980996 to 38981004 8 + TSS region transcription start site region 55699
Tssr55700 6 38983303 to 38983317 14 + TSS region transcription start site region 55700
Tssr55701 6 38983325 to 38983338 13 + TSS region transcription start site region 55701
Gm38688 6 38988836 to 39006437 17601 - lncRNA gene predicted gene, 38688
Tssr55702 6 39002685 to 39002697 12 + TSS region transcription start site region 55702
Tssr55703 6 39004035 to 39004050 15 + TSS region transcription start site region 55703
Gm23010 6 39013666 to 39013791 125 + snoRNA gene predicted gene, 23010
Gm38489 6 39019198 to 39043829 24631 - lncRNA gene predicted gene, 38489
Tssr55704 6 39021665 to 39021676 11 + TSS region transcription start site region 55704
Tssr55705 6 39024305 to 39024307 2 + TSS region transcription start site region 55705
Tssr55706 6 39033383 to 39033401 18 + TSS region transcription start site region 55706
Tssr55707 6 39033499 to 39033511 12 + TSS region transcription start site region 55707
Tssr55708 6 39035542 to 39035572 30 + TSS region transcription start site region 55708