Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:35508404-37978419

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165 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Acigg7 6 25814203 to 37531775 11717572 QTL anti COL7 IgG2b antibody 7
Mtpn 6 35508906 to 35539888 30982 - protein coding gene myotrophin
Tssr60285 6 35510031 to 35510038 7 - TSS region transcription start site region 60285
Tssr60286 6 35510044 to 35510055 11 - TSS region transcription start site region 60286
Tssr60287 6 35510056 to 35510068 12 - TSS region transcription start site region 60287
Tssr60288 6 35510069 to 35510101 32 - TSS region transcription start site region 60288
Tssr60289 6 35510231 to 35510240 9 - TSS region transcription start site region 60289
Tssr60290 6 35510269 to 35510281 12 - TSS region transcription start site region 60290
Tssr60291 6 35510286 to 35510327 41 - TSS region transcription start site region 60291
Tssr60292 6 35510333 to 35510344 11 - TSS region transcription start site region 60292
Tssr60293 6 35510353 to 35510364 11 - TSS region transcription start site region 60293
Tssr60294 6 35510377 to 35510387 10 - TSS region transcription start site region 60294
Tssr60295 6 35510397 to 35510408 11 - TSS region transcription start site region 60295
Tssr60296 6 35510548 to 35510570 22 - TSS region transcription start site region 60296
Tssr55593 6 35510565 to 35510578 13 + TSS region transcription start site region 55593
Tssr60297 6 35510594 to 35510615 21 - TSS region transcription start site region 60297
Tssr60298 6 35510659 to 35510729 70 - TSS region transcription start site region 60298
Tssr60299 6 35510750 to 35510764 14 - TSS region transcription start site region 60299
Tssr60300 6 35510765 to 35510789 24 - TSS region transcription start site region 60300
Tssr60301 6 35511115 to 35511148 33 - TSS region transcription start site region 60301
Tssr60302 6 35511354 to 35511381 27 - TSS region transcription start site region 60302
Tssr60303 6 35511481 to 35511492 11 - TSS region transcription start site region 60303
Tssr60304 6 35511497 to 35511509 12 - TSS region transcription start site region 60304
Tssr60305 6 35511513 to 35511534 21 - TSS region transcription start site region 60305
Tssr60306 6 35511594 to 35511618 24 - TSS region transcription start site region 60306
Tssr60307 6 35511703 to 35511724 21 - TSS region transcription start site region 60307
Tssr60308 6 35512005 to 35512041 36 - TSS region transcription start site region 60308
Tssr60309 6 35512059 to 35512072 13 - TSS region transcription start site region 60309
Tssr60310 6 35512160 to 35512224 64 - TSS region transcription start site region 60310
Tssr60311 6 35520968 to 35520975 7 - TSS region transcription start site region 60311
Gm23053 6 35524543 to 35524638 95 - miRNA gene predicted gene, 23053
Tssr60312 6 35538241 to 35538283 42 - TSS region transcription start site region 60312
Cpgi17298 6 35539126 to 35540064 938 CpG island CpG island 17298
Tssr60313 6 35539707 to 35539718 11 - TSS region transcription start site region 60313
Tssr60314 6 35539747 to 35539760 13 - TSS region transcription start site region 60314
Tssr60315 6 35539765 to 35539823 58 - TSS region transcription start site region 60315
D6Mit79 6 35558145 to 35558264 119 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 79
Gm42931 6 35611089 to 35615669 4580 - lincRNA gene predicted gene 42931
Cpgi17299 6 35816777 to 35816973 196 CpG island CpG island 17299
Tssr1813 6 35882529 to 35882536 7 + TSS region transcription start site region 1813
9030409K20Rik 6 35883281 to 35885441 2160 unclassified gene RIKEN cDNA 9030409K20 gene
Gm43442 6 35926711 to 35927124 413 + pseudogene predicted gene 43442
Gm38790 6 35965879 to 35999695 33816 - lncRNA gene predicted gene, 38790
Gm23273 6 35975330 to 35975464 134 + snoRNA gene predicted gene, 23273
Tssr60316 6 35989016 to 35989027 11 - TSS region transcription start site region 60316
Tssr60317 6 35994652 to 35994655 3 - TSS region transcription start site region 60317
Tssr55594 6 35996994 to 35997007 13 + TSS region transcription start site region 55594
Tssr55595 6 35997011 to 35997034 23 + TSS region transcription start site region 55595
Tssr55596 6 35997080 to 35997091 11 + TSS region transcription start site region 55596
Tssr60318 6 35998666 to 35998674 8 - TSS region transcription start site region 60318
Tssr60319 6 36179774 to 36179804 30 - TSS region transcription start site region 60319
Gm43443 6 36186707 to 36189099 2392 - unclassified gene predicted gene 43443
Tssr1814 6 36195415 to 36195419 4 - TSS region transcription start site region 1814
9330158H04Rik 6 36333138 to 36388234 55096 - lincRNA gene RIKEN cDNA 9330158H04 gene
Tssr55597 6 36365004 to 36365005 1 + TSS region transcription start site region 55597
Tssr60320 6 36387845 to 36387861 16 - TSS region transcription start site region 60320
Cpgi17300 6 36387867 to 36388821 954 CpG island CpG island 17300
Tssr55598 6 36387967 to 36388027 60 + TSS region transcription start site region 55598
Tssr55599 6 36388039 to 36388053 14 + TSS region transcription start site region 55599
Tssr55600 6 36388055 to 36388070 15 + TSS region transcription start site region 55600
Chrm2 6 36388084 to 36528414 140330 + protein coding gene cholinergic receptor, muscarinic 2, cardiac
Tssr55601 6 36388186 to 36388207 21 + TSS region transcription start site region 55601
Tssr55602 6 36388209 to 36388221 12 + TSS region transcription start site region 55602
Tssr55603 6 36388581 to 36388616 35 + TSS region transcription start site region 55603
Tssr60321 6 36388915 to 36388918 3 - TSS region transcription start site region 60321
Tssr55604 6 36389154 to 36389173 19 + TSS region transcription start site region 55604
Tssr55605 6 36389321 to 36389334 13 + TSS region transcription start site region 55605
Tssr55606 6 36389389 to 36389407 18 + TSS region transcription start site region 55606
Tssr55607 6 36389408 to 36389419 11 + TSS region transcription start site region 55607
Tssr55608 6 36389431 to 36389440 9 + TSS region transcription start site region 55608
Mir490 6 36421742 to 36421825 83 + miRNA gene microRNA 490
Gm43441 6 36587777 to 36587981 204 + pseudogene predicted gene 43441
Tammq4 6 36639411 to 36639411 0 QTL tibialis anterior muscle mass QTL 4
Edlmmq5 6 36639411 to 36639411 0 QTL extensor digitorum longus muscle mass QTL 5
Gmmq4 6 36639411 to 36639411 0 QTL gastrocnemius muscle mass QTL 4
Gm2189 6 36639838 to 36640266 428 - pseudogene predicted gene 2189
Gm25111 6 36699397 to 36699543 146 + miRNA gene predicted gene, 25111
Ptn 6 36714929 to 36810220 95291 - protein coding gene pleiotrophin
Tssr60322 6 36715047 to 36715051 4 - TSS region transcription start site region 60322
Tssr60323 6 36715421 to 36715431 10 - TSS region transcription start site region 60323
Tssr60324 6 36715465 to 36715474 9 - TSS region transcription start site region 60324
Tssr60325 6 36715480 to 36715492 12 - TSS region transcription start site region 60325
Tssr60326 6 36715501 to 36715520 19 - TSS region transcription start site region 60326
Tssr60327 6 36715568 to 36715573 5 - TSS region transcription start site region 60327
Tssr60328 6 36715592 to 36715664 72 - TSS region transcription start site region 60328
Tssr60329 6 36715668 to 36715685 17 - TSS region transcription start site region 60329
Tssr60330 6 36715696 to 36715715 19 - TSS region transcription start site region 60330
Tssr55609 6 36715701 to 36715736 35 + TSS region transcription start site region 55609
Tssr60331 6 36738881 to 36738884 3 - TSS region transcription start site region 60331
Tssr60332 6 36741391 to 36741415 24 - TSS region transcription start site region 60332
Tssr60333 6 36741429 to 36741440 11 - TSS region transcription start site region 60333
Tssr60334 6 36743045 to 36743050 5 - TSS region transcription start site region 60334
Tssr60335 6 36743371 to 36743400 29 - TSS region transcription start site region 60335
Tssr60336 6 36743404 to 36743419 15 - TSS region transcription start site region 60336
Tssr60337 6 36809938 to 36809974 36 - TSS region transcription start site region 60337
Tssr60338 6 36809981 to 36810000 19 - TSS region transcription start site region 60338
Tssr60339 6 36810003 to 36810024 21 - TSS region transcription start site region 60339
Tssr60340 6 36810038 to 36810057 19 - TSS region transcription start site region 60340
Tssr60341 6 36810071 to 36810091 20 - TSS region transcription start site region 60341
Tssr60342 6 36810099 to 36810126 27 - TSS region transcription start site region 60342
Tssr60343 6 36810136 to 36810147 11 - TSS region transcription start site region 60343
Tssr60344 6 36810161 to 36810187 26 - TSS region transcription start site region 60344
6430604M11Rik 6 36840208 to 36843985 3777 unclassified non-coding RNA gene RIKEN cDNA 6430604M11 gene
Dgki 6 36846022 to 37300184 454162 - protein coding gene diacylglycerol kinase, iota
1700111E14Rik 6 36937048 to 36985784 48736 + antisense lncRNA gene RIKEN cDNA 1700111E14 gene
Gm7452 6 36956802 to 36959888 3086 + pseudogene predicted pseudogene 7452
Tssr60345 6 37016723 to 37016734 11 - TSS region transcription start site region 60345
Tssr60346 6 37016993 to 37016996 3 - TSS region transcription start site region 60346
Desp4 6 37072895 to 37072895 0 QTL despair 4
Tssr60347 6 37138927 to 37138936 9 - TSS region transcription start site region 60347
Tssr55610 6 37143225 to 37143246 21 + TSS region transcription start site region 55610
Tssr60348 6 37145977 to 37145979 2 - TSS region transcription start site region 60348
Tssr60349 6 37207664 to 37207672 8 - TSS region transcription start site region 60349
Tssr60350 6 37213000 to 37213011 11 - TSS region transcription start site region 60350
Tssr55611 6 37213086 to 37213094 8 + TSS region transcription start site region 55611
Cpgi17301 6 37299468 to 37300330 862 CpG island CpG island 17301
Tssr60351 6 37299913 to 37299932 19 - TSS region transcription start site region 60351
Tssr60352 6 37299950 to 37299981 31 - TSS region transcription start site region 60352
Creb3l2 6 37327255 to 37442146 114891 - protein coding gene cAMP responsive element binding protein 3-like 2
Tssr60353 6 37355291 to 37355292 1 - TSS region transcription start site region 60353
Tssr60354 6 37362440 to 37362445 5 - TSS region transcription start site region 60354
Tssr60355 6 37407700 to 37407704 4 - TSS region transcription start site region 60355
Gm33275 6 37418188 to 37419452 1264 + lncRNA gene predicted gene, 33275
Cpgi17302 6 37441616 to 37442475 859 CpG island CpG island 17302
Tssr60356 6 37441910 to 37441928 18 - TSS region transcription start site region 60356
Tssr60357 6 37442095 to 37442154 59 - TSS region transcription start site region 60357
Tssr60358 6 37442159 to 37442172 13 - TSS region transcription start site region 60358
Gm33318 6 37442496 to 37447405 4909 + lncRNA gene predicted gene, 33318
Tssr55612 6 37442501 to 37442524 23 + TSS region transcription start site region 55612
Tssr55613 6 37442543 to 37442567 24 + TSS region transcription start site region 55613
Gm33429 6 37526426 to 37531403 4977 - lncRNA gene predicted gene, 33429
Tssr55614 6 37530157 to 37530158 1 + TSS region transcription start site region 55614
Akr1d1 6 37530173 to 37568815 38642 + protein coding gene aldo-keto reductase family 1, member D1
Tssr55615 6 37530184 to 37530198 14 + TSS region transcription start site region 55615
Tssr55616 6 37530204 to 37530240 36 + TSS region transcription start site region 55616
Tssr55617 6 37539714 to 37539726 12 + TSS region transcription start site region 55617
Gm7463 6 37541414 to 37541960 546 + pseudogene predicted gene 7463
Tssr60359 6 37604183 to 37604186 3 - TSS region transcription start site region 60359
Cpgi17303 6 37610481 to 37611073 592 CpG island CpG island 17303
Ybx1-ps2 6 37686239 to 37687195 956 - pseudogene Y box protein 1, pseudogene 2
Cpgi17304 6 37687000 to 37687302 302 CpG island CpG island 17304
Tssr55618 6 37706044 to 37706048 4 + TSS region transcription start site region 55618
Gm38791 6 37714655 to 37734381 19726 + lncRNA gene predicted gene, 38791
Tssr55619 6 37732625 to 37732629 4 + TSS region transcription start site region 55619
Tssr55620 6 37805972 to 37805979 7 + TSS region transcription start site region 55620
Atp6v0c-ps2 6 37806086 to 37806550 464 + pseudogene ATPase, H+ transporting, lysosomal V0 subunit C, pseudogene 2
Tssr55621 6 37806298 to 37806343 45 + TSS region transcription start site region 55621
Tssr55622 6 37806462 to 37806498 36 + TSS region transcription start site region 55622
Tssr55623 6 37806684 to 37806709 25 + TSS region transcription start site region 55623
Gm7492 6 37865840 to 37866564 724 - pseudogene predicted gene 7492
Cpgi17305 6 37870335 to 37871775 1440 CpG island CpG island 17305
Tssr60360 6 37870423 to 37870467 44 - TSS region transcription start site region 60360
Tssr55624 6 37870708 to 37870720 12 + TSS region transcription start site region 55624
Tssr55625 6 37870786 to 37870882 96 + TSS region transcription start site region 55625
Trim24 6 37870811 to 37966296 95485 + protein coding gene tripartite motif-containing 24
Tssr55626 6 37870893 to 37870927 34 + TSS region transcription start site region 55626
Tssr55627 6 37870928 to 37870956 28 + TSS region transcription start site region 55627
Tssr55628 6 37870962 to 37870973 11 + TSS region transcription start site region 55628
Tssr55629 6 37870995 to 37871015 20 + TSS region transcription start site region 55629
Tssr60361 6 37871327 to 37871344 17 - TSS region transcription start site region 60361
Tssr60362 6 37871477 to 37871490 13 - TSS region transcription start site region 60362
D6Jpk1 6 37893978 to 37894052 74 DNA segment DNA segment, Chr 6, Japan, Kominami 1
Tssr55630 6 37900477 to 37900487 10 + TSS region transcription start site region 55630
Tssr55631 6 37900502 to 37900520 18 + TSS region transcription start site region 55631
9030601B04Rik 6 37941015 to 37942419 1404 unclassified gene RIKEN cDNA 9030601B04 gene