Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:3499038-4509320

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vps50 6 3498393 to 3603531 105138 + protein coding gene VPS50 EARP/GARPII complex subunit
Tssr1766 6 3504241 to 3504245 4 + TSS region transcription start site region 1766
Tssr54698 6 3523934 to 3523942 8 + TSS region transcription start site region 54698
Tssr54699 6 3526668 to 3526679 11 + TSS region transcription start site region 54699
D6Mit231 6 3528851 to 3528953 102 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 231
Tssr1767 6 3570559 to 3570564 5 - TSS region transcription start site region 1767
Tssr59699 6 3570570 to 3570583 13 - TSS region transcription start site region 59699
Tssr54700 6 3574274 to 3574278 4 + TSS region transcription start site region 54700
Gm43294 6 3583814 to 3586303 2489 + unclassified gene predicted gene 43294
Calcr 6 3685720 to 3764732 79012 - protein coding gene calcitonin receptor
Mir653 6 3721301 to 3721385 84 - miRNA gene microRNA 653
Mir489 6 3721897 to 3722003 106 - miRNA gene microRNA 489
Cpgi17121 6 3763360 to 3764178 818 CpG island CpG island 17121
Tssr59700 6 3763618 to 3763624 6 - TSS region transcription start site region 59700
Gm33576 6 3763799 to 3807425 43626 + lncRNA gene predicted gene, 33576
Tssr54701 6 3763846 to 3763857 11 + TSS region transcription start site region 54701
Gm44221 6 3863049 to 3863436 387 - pseudogene predicted gene, 44221
Tfpi2 6 3962595 to 3988919 26324 - protein coding gene tissue factor pathway inhibitor 2
Tssr59701 6 3966406 to 3966409 3 - TSS region transcription start site region 59701
Cpgi17122 6 3968149 to 3968492 343 CpG island CpG island 17122
Tssr59702 6 3968364 to 3968381 17 - TSS region transcription start site region 59702
Tssr59703 6 3968395 to 3968417 22 - TSS region transcription start site region 59703
Tssr59704 6 3968571 to 3968610 39 - TSS region transcription start site region 59704
Tssr59705 6 3988834 to 3988881 47 - TSS region transcription start site region 59705
Tssr59706 6 3988900 to 3988941 41 - TSS region transcription start site region 59706
Tssr59707 6 3988946 to 3988964 18 - TSS region transcription start site region 59707
Tssr59708 6 3988967 to 3988987 20 - TSS region transcription start site region 59708
Tssr54702 6 3989053 to 3989077 24 + TSS region transcription start site region 54702
Tssr54703 6 3993776 to 3993789 13 + TSS region transcription start site region 54703
Gngt1 6 3993792 to 3997436 3644 + protein coding gene guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1
Tssr54704 6 3993994 to 3994000 6 + TSS region transcription start site region 54704
Tssr54705 6 3994001 to 3994016 15 + TSS region transcription start site region 54705
Tssr54706 6 3994023 to 3994027 4 + TSS region transcription start site region 54706
Tssr1768 6 3994032 to 3994036 4 + TSS region transcription start site region 1768
Tssr54707 6 4003926 to 4003942 16 + TSS region transcription start site region 54707
Tssr54708 6 4003944 to 4004028 84 + TSS region transcription start site region 54708
Gng11 6 4003987 to 4008445 4458 + protein coding gene guanine nucleotide binding protein (G protein), gamma 11
Cpgi17123 6 4004038 to 4004320 282 CpG island CpG island 17123
Tssr54709 6 4004040 to 4004057 17 + TSS region transcription start site region 54709
Tssr54710 6 4004073 to 4004078 5 + TSS region transcription start site region 54710
Tssr54711 6 4004089 to 4004100 11 + TSS region transcription start site region 54711
Tssr54712 6 4004185 to 4004196 11 + TSS region transcription start site region 54712
Tssr54713 6 4004212 to 4004223 11 + TSS region transcription start site region 54713
Tssr54714 6 4004241 to 4004274 33 + TSS region transcription start site region 54714
Tssr54715 6 4004299 to 4004302 3 + TSS region transcription start site region 54715
Tssr59709 6 4030894 to 4030901 7 - TSS region transcription start site region 59709
4930528H21Rik 6 4031841 to 4047584 15743 - lincRNA gene RIKEN cDNA 4930528H21 gene
Tssr59710 6 4047557 to 4047569 12 - TSS region transcription start site region 59710
Tssr59711 6 4047573 to 4047580 7 - TSS region transcription start site region 59711
Tssr54716 6 4047677 to 4047711 34 + TSS region transcription start site region 54716
Tssr59712 6 4069758 to 4069770 12 - TSS region transcription start site region 59712
Gm38760 6 4074145 to 4076570 2425 - lncRNA gene predicted gene, 38760
Bet1 6 4076899 to 4086972 10073 - protein coding gene Bet1 golgi vesicular membrane trafficking protein
Tssr59713 6 4086803 to 4086819 16 - TSS region transcription start site region 59713
Tssr59714 6 4086820 to 4086831 11 - TSS region transcription start site region 59714
Cpgi17124 6 4086831 to 4087114 283 CpG island CpG island 17124
Tssr59715 6 4086885 to 4086904 19 - TSS region transcription start site region 59715
Tssr59716 6 4086914 to 4086960 46 - TSS region transcription start site region 59716
Gm44055 6 4254088 to 4254334 246 - pseudogene predicted gene, 44055
Gm44057 6 4262754 to 4262849 95 - pseudogene predicted gene, 44057
Gm8602 6 4359028 to 4359634 606 + pseudogene predicted gene 8602
Gm44379 6 4364232 to 4364395 163 - unclassified gene predicted gene, 44379
Gm44380 6 4367774 to 4368066 292 + unclassified gene predicted gene, 44380
Gm46948 6 4380180 to 4465277 85097 - lncRNA gene predicted gene, 46948
Gm24442 6 4382878 to 4383204 326 + unclassified non-coding RNA gene predicted gene, 24442
Gm2522 6 4390920 to 4391241 321 + pseudogene predicted gene 2522
Gm33788 6 4423069 to 4446272 23203 + lncRNA gene predicted gene, 33788
D6Mit86 6 4464884 to 4465015 131 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 86
Mobq9 6 4464884 to 4465015 131 QTL multigenic obesity QTL 9
Bhr8 6 4464884 to 4465015 131 QTL bronchial hyperresponsiveness 8
Sig 6 4464884 to 8778488 4313604 heritable phenotypic marker sightless
Cia6 6 4464884 to 87426034 82961150 QTL collagen induced arthritis QTL 6
Nhdlq5 6 4464884 to 4465015 131 QTL non-HDL QTL 5
Lith10 6 4464884 to 4465015 131 QTL lithogenic gene 10
D6Mit84 6 4464899 to 4465019 120 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 84
Gm37883 6 4483474 to 4484198 724 - unclassified gene predicted gene, 37883
W10q11 6 4503823 to 96656149 92152326 QTL weight 10 weeks QTL 11
D6Mit138 6 4503823 to 4503937 114 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 138
Egq8 6 4503823 to 96656149 92152326 QTL early growth QTL 8
Bmiq2 6 4503823 to 45314181 40810358 QTL body mass index QTL 2
Aaj2 6 4503823 to 48726677 44222854 QTL anxiety in A/J 2
Axtq2 6 4503823 to 48726677 44222854 QTL anxiety QTL 2
W3q3 6 4503823 to 96656149 92152326 QTL weight 3 weeks QTL 3
Bmiq3 6 4503823 to 48726677 44222854 QTL body mass index QTL 3
W6q4 6 4503823 to 96656149 92152326 QTL weight 6 weeks QTL 4
Tssr54717 6 4505219 to 4505260 41 + TSS region transcription start site region 54717
Col1a2 6 4505618 to 4541543 35925 + protein coding gene collagen, type I, alpha 2
Tssr54718 6 4505695 to 4505709 14 + TSS region transcription start site region 54718
Gm43921 6 4506087 to 4507878 1791 + unclassified gene predicted gene, 43921
Tssr54719 6 4508571 to 4508592 21 + TSS region transcription start site region 54719
Bmiq1 6 29751334 to 4503823 -25247511 QTL body mass index QTL 1