Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:34938688-35328730

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stra8 6 34920163 to 34939344 19181 + protein coding gene stimulated by retinoic acid gene 8
Slc23a4 6 34945278 to 34988404 43126 - protein coding gene solute carrier family 23 member 4
Cpgi17289 6 34948718 to 34949081 363 CpG island CpG island 17289
Cpgi17290 6 34988140 to 34988371 231 CpG island CpG island 17290
Tssr60270 6 34988438 to 34988455 17 - TSS region transcription start site region 60270
Cpgi17291 6 34995328 to 34995484 156 CpG island CpG island 17291
Cnot4 6 35022065 to 35133724 111659 - protein coding gene CCR4-NOT transcription complex, subunit 4
Tssr60271 6 35065016 to 35065022 6 - TSS region transcription start site region 60271
Tssr60272 6 35086132 to 35086136 4 - TSS region transcription start site region 60272
Tssr60273 6 35090686 to 35090690 4 - TSS region transcription start site region 60273
Tssr60274 6 35100962 to 35100979 17 - TSS region transcription start site region 60274
Tssr60275 6 35112630 to 35112634 4 - TSS region transcription start site region 60275
A230071A22Rik 6 35121521 to 35123927 2406 unclassified gene RIKEN cDNA A230071A22 gene
Cpgi17292 6 35133088 to 35134172 1084 CpG island CpG island 17292
Gm33046 6 35133613 to 35152142 18529 + lncRNA gene predicted gene, 33046
Tssr60276 6 35133688 to 35133730 42 - TSS region transcription start site region 60276
Tssr60277 6 35133731 to 35133742 11 - TSS region transcription start site region 60277
Tssr55574 6 35133873 to 35133894 21 + TSS region transcription start site region 55574
Cpgi17293 6 35177345 to 35178483 1138 CpG island CpG island 17293
Tssr55575 6 35177386 to 35177426 40 + TSS region transcription start site region 55575
Tssr55576 6 35177610 to 35177627 17 + TSS region transcription start site region 55576
Nup205 6 35177616 to 35247599 69983 + protein coding gene nucleoporin 205
Tssr55577 6 35177718 to 35177758 40 + TSS region transcription start site region 55577
Tssr55578 6 35177814 to 35177826 12 + TSS region transcription start site region 55578
Tssr55579 6 35177841 to 35177860 19 + TSS region transcription start site region 55579
Tssr55580 6 35177895 to 35177936 41 + TSS region transcription start site region 55580
Tssr55581 6 35178104 to 35178114 10 + TSS region transcription start site region 55581
Tssr55582 6 35178119 to 35178139 20 + TSS region transcription start site region 55582
Tssr55583 6 35185239 to 35185244 5 + TSS region transcription start site region 55583
Tssr55584 6 35205431 to 35205445 14 + TSS region transcription start site region 55584
Tssr55585 6 35236512 to 35236556 44 + TSS region transcription start site region 55585
Gm23435 6 35243595 to 35243750 155 + snRNA gene predicted gene, 23435
D6Mit1007 6 35246334 to 35246660 326 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 1007
Cpgi17294 6 35252410 to 35253307 897 CpG island CpG island 17294
Tssr55586 6 35252670 to 35252681 11 + TSS region transcription start site region 55586
Tssr55587 6 35252692 to 35252717 25 + TSS region transcription start site region 55587
1810058I24Rik 6 35252699 to 35262059 9360 + lincRNA gene RIKEN cDNA 1810058I24 gene
Tssr55588 6 35252724 to 35252752 28 + TSS region transcription start site region 55588
Tssr60278 6 35253091 to 35253104 13 - TSS region transcription start site region 60278
Tssr60279 6 35256798 to 35256815 17 - TSS region transcription start site region 60279
Tssr55589 6 35261275 to 35261291 16 + TSS region transcription start site region 55589
Tssr55590 6 35261362 to 35261413 51 + TSS region transcription start site region 55590
Tssr55591 6 35266108 to 35266113 5 + TSS region transcription start site region 55591
Slc13a4 6 35267953 to 35308126 40173 - protein coding gene solute carrier family 13 (sodium/sulfate symporters), member 4
Cpgi17295 6 35270323 to 35270531 208 CpG island CpG island 17295
Cpgi17296 6 35307367 to 35307529 162 CpG island CpG island 17296
Tssr60280 6 35307944 to 35307949 5 - TSS region transcription start site region 60280
Tssr60281 6 35308110 to 35308136 26 - TSS region transcription start site region 60281
Fam180a 6 35312746 to 35326141 13395 - protein coding gene family with sequence similarity 180, member A
Gm38788 6 35313154 to 35322319 9165 + lncRNA gene predicted gene, 38788
D6Mit77 6 35324650 to 35324774 124 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 77
Tssr60282 6 35325999 to 35326047 48 - TSS region transcription start site region 60282
Tssr60283 6 35326073 to 35326089 16 - TSS region transcription start site region 60283
Tssr60284 6 35326123 to 35326155 32 - TSS region transcription start site region 60284