Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:34927746-35711141

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95 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stra8 6 34920163 to 34939344 19181 + protein coding gene stimulated by retinoic acid gene 8
Slc23a4 6 34945278 to 34988404 43126 - protein coding gene solute carrier family 23 member 4
Cpgi17289 6 34948718 to 34949081 363 CpG island CpG island 17289
Cpgi17290 6 34988140 to 34988371 231 CpG island CpG island 17290
Tssr60270 6 34988438 to 34988455 17 - TSS region transcription start site region 60270
Cpgi17291 6 34995328 to 34995484 156 CpG island CpG island 17291
Cnot4 6 35022065 to 35133724 111659 - protein coding gene CCR4-NOT transcription complex, subunit 4
Tssr60271 6 35065016 to 35065022 6 - TSS region transcription start site region 60271
Tssr60272 6 35086132 to 35086136 4 - TSS region transcription start site region 60272
Tssr60273 6 35090686 to 35090690 4 - TSS region transcription start site region 60273
Tssr60274 6 35100962 to 35100979 17 - TSS region transcription start site region 60274
Tssr60275 6 35112630 to 35112634 4 - TSS region transcription start site region 60275
A230071A22Rik 6 35121521 to 35123927 2406 unclassified gene RIKEN cDNA A230071A22 gene
Cpgi17292 6 35133088 to 35134172 1084 CpG island CpG island 17292
Gm33046 6 35133613 to 35152142 18529 + lncRNA gene predicted gene, 33046
Tssr60276 6 35133688 to 35133730 42 - TSS region transcription start site region 60276
Tssr60277 6 35133731 to 35133742 11 - TSS region transcription start site region 60277
Tssr55574 6 35133873 to 35133894 21 + TSS region transcription start site region 55574
Cpgi17293 6 35177345 to 35178483 1138 CpG island CpG island 17293
Tssr55575 6 35177386 to 35177426 40 + TSS region transcription start site region 55575
Tssr55576 6 35177610 to 35177627 17 + TSS region transcription start site region 55576
Nup205 6 35177616 to 35247599 69983 + protein coding gene nucleoporin 205
Tssr55577 6 35177718 to 35177758 40 + TSS region transcription start site region 55577
Tssr55578 6 35177814 to 35177826 12 + TSS region transcription start site region 55578
Tssr55579 6 35177841 to 35177860 19 + TSS region transcription start site region 55579
Tssr55580 6 35177895 to 35177936 41 + TSS region transcription start site region 55580
Tssr55581 6 35178104 to 35178114 10 + TSS region transcription start site region 55581
Tssr55582 6 35178119 to 35178139 20 + TSS region transcription start site region 55582
Tssr55583 6 35185239 to 35185244 5 + TSS region transcription start site region 55583
Tssr55584 6 35205431 to 35205445 14 + TSS region transcription start site region 55584
Tssr55585 6 35236512 to 35236556 44 + TSS region transcription start site region 55585
Gm23435 6 35243595 to 35243750 155 + snRNA gene predicted gene, 23435
D6Mit1007 6 35246334 to 35246660 326 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 1007
Cpgi17294 6 35252410 to 35253307 897 CpG island CpG island 17294
Tssr55586 6 35252670 to 35252681 11 + TSS region transcription start site region 55586
Tssr55587 6 35252692 to 35252717 25 + TSS region transcription start site region 55587
1810058I24Rik 6 35252699 to 35262059 9360 + lincRNA gene RIKEN cDNA 1810058I24 gene
Tssr55588 6 35252724 to 35252752 28 + TSS region transcription start site region 55588
Tssr60278 6 35253091 to 35253104 13 - TSS region transcription start site region 60278
Tssr60279 6 35256798 to 35256815 17 - TSS region transcription start site region 60279
Tssr55589 6 35261275 to 35261291 16 + TSS region transcription start site region 55589
Tssr55590 6 35261362 to 35261413 51 + TSS region transcription start site region 55590
Tssr55591 6 35266108 to 35266113 5 + TSS region transcription start site region 55591
Slc13a4 6 35267953 to 35308126 40173 - protein coding gene solute carrier family 13 (sodium/sulfate symporters), member 4
Cpgi17295 6 35270323 to 35270531 208 CpG island CpG island 17295
Cpgi17296 6 35307367 to 35307529 162 CpG island CpG island 17296
Tssr60280 6 35307944 to 35307949 5 - TSS region transcription start site region 60280
Tssr60281 6 35308110 to 35308136 26 - TSS region transcription start site region 60281
Fam180a 6 35312746 to 35326141 13395 - protein coding gene family with sequence similarity 180, member A
Gm38788 6 35313154 to 35322319 9165 + lncRNA gene predicted gene, 38788
D6Mit77 6 35324650 to 35324774 124 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 77
Tssr60282 6 35325999 to 35326047 48 - TSS region transcription start site region 60282
Tssr60283 6 35326073 to 35326089 16 - TSS region transcription start site region 60283
Tssr60284 6 35326123 to 35326155 32 - TSS region transcription start site region 60284
1700065J11Rik 6 35330846 to 35336825 5979 + lincRNA gene RIKEN cDNA 1700065J11 gene
Cpgi17297 6 35366430 to 35366737 307 CpG island CpG island 17297
Tssr55592 6 35411971 to 35411978 7 + TSS region transcription start site region 55592
Gm38789 6 35412804 to 35419014 6210 + lncRNA gene predicted gene, 38789
Mtpn 6 35508906 to 35539888 30982 - protein coding gene myotrophin
Tssr60285 6 35510031 to 35510038 7 - TSS region transcription start site region 60285
Tssr60286 6 35510044 to 35510055 11 - TSS region transcription start site region 60286
Tssr60287 6 35510056 to 35510068 12 - TSS region transcription start site region 60287
Tssr60288 6 35510069 to 35510101 32 - TSS region transcription start site region 60288
Tssr60289 6 35510231 to 35510240 9 - TSS region transcription start site region 60289
Tssr60290 6 35510269 to 35510281 12 - TSS region transcription start site region 60290
Tssr60291 6 35510286 to 35510327 41 - TSS region transcription start site region 60291
Tssr60292 6 35510333 to 35510344 11 - TSS region transcription start site region 60292
Tssr60293 6 35510353 to 35510364 11 - TSS region transcription start site region 60293
Tssr60294 6 35510377 to 35510387 10 - TSS region transcription start site region 60294
Tssr60295 6 35510397 to 35510408 11 - TSS region transcription start site region 60295
Tssr60296 6 35510548 to 35510570 22 - TSS region transcription start site region 60296
Tssr55593 6 35510565 to 35510578 13 + TSS region transcription start site region 55593
Tssr60297 6 35510594 to 35510615 21 - TSS region transcription start site region 60297
Tssr60298 6 35510659 to 35510729 70 - TSS region transcription start site region 60298
Tssr60299 6 35510750 to 35510764 14 - TSS region transcription start site region 60299
Tssr60300 6 35510765 to 35510789 24 - TSS region transcription start site region 60300
Tssr60301 6 35511115 to 35511148 33 - TSS region transcription start site region 60301
Tssr60302 6 35511354 to 35511381 27 - TSS region transcription start site region 60302
Tssr60303 6 35511481 to 35511492 11 - TSS region transcription start site region 60303
Tssr60304 6 35511497 to 35511509 12 - TSS region transcription start site region 60304
Tssr60305 6 35511513 to 35511534 21 - TSS region transcription start site region 60305
Tssr60306 6 35511594 to 35511618 24 - TSS region transcription start site region 60306
Tssr60307 6 35511703 to 35511724 21 - TSS region transcription start site region 60307
Tssr60308 6 35512005 to 35512041 36 - TSS region transcription start site region 60308
Tssr60309 6 35512059 to 35512072 13 - TSS region transcription start site region 60309
Tssr60310 6 35512160 to 35512224 64 - TSS region transcription start site region 60310
Tssr60311 6 35520968 to 35520975 7 - TSS region transcription start site region 60311
Gm23053 6 35524543 to 35524638 95 - miRNA gene predicted gene, 23053
Tssr60312 6 35538241 to 35538283 42 - TSS region transcription start site region 60312
Cpgi17298 6 35539126 to 35540064 938 CpG island CpG island 17298
Tssr60313 6 35539707 to 35539718 11 - TSS region transcription start site region 60313
Tssr60314 6 35539747 to 35539760 13 - TSS region transcription start site region 60314
Tssr60315 6 35539765 to 35539823 58 - TSS region transcription start site region 60315
D6Mit79 6 35558145 to 35558264 119 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 79
Gm42931 6 35611089 to 35615669 4580 - lincRNA gene predicted gene 42931