Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:34841782-43571831

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1349 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Acigg7 6 25814203 to 37531775 11717572 QTL anti COL7 IgG2b antibody 7
Obrq2a 6 31717406 to 34870960 3153554 QTL obesity resistance QTL 2a
Cia6b 6 34734663 to 38969603 4234940 QTL collagen induced arthritis QTL 6b
Agbl3 6 34780432 to 34859459 79027 + protein coding gene ATP/GTP binding protein-like 3
Gm46957 6 34841335 to 34849543 8208 - lncRNA gene predicted gene, 46957
Gm43748 6 34859705 to 34860937 1232 + unclassified gene predicted gene 43748
Tssr60252 6 34862572 to 34862613 41 - TSS region transcription start site region 60252
Tssr55559 6 34863101 to 34863112 11 + TSS region transcription start site region 55559
Tssr55560 6 34863114 to 34863120 6 + TSS region transcription start site region 55560
Tssr55561 6 34863130 to 34863183 53 + TSS region transcription start site region 55561
Tmem140 6 34863146 to 34874946 11800 + protein coding gene transmembrane protein 140
Tssr55562 6 34863218 to 34863241 23 + TSS region transcription start site region 55562
Tssr55563 6 34865089 to 34865095 6 + TSS region transcription start site region 55563
Tssr55564 6 34866349 to 34866386 37 + TSS region transcription start site region 55564
Tssr55565 6 34866963 to 34866972 9 + TSS region transcription start site region 55565
Cyren 6 34871771 to 34878060 6289 - protein coding gene cell cycle regulator of NHEJ
Tssr55566 6 34873354 to 34873365 11 + TSS region transcription start site region 55566
Tssr55567 6 34873375 to 34873390 15 + TSS region transcription start site region 55567
Tssr55568 6 34873392 to 34873404 12 + TSS region transcription start site region 55568
Tssr60253 6 34873523 to 34873546 23 - TSS region transcription start site region 60253
Tssr60254 6 34875608 to 34875628 20 - TSS region transcription start site region 60254
Tssr60255 6 34875644 to 34875674 30 - TSS region transcription start site region 60255
Cpgi17286 6 34877637 to 34878584 947 CpG island CpG island 17286
Tssr60256 6 34878006 to 34878078 72 - TSS region transcription start site region 60256
Wdr91 6 34880426 to 34910876 30450 - protein coding gene WD repeat domain 91
Tssr60257 6 34893575 to 34893599 24 - TSS region transcription start site region 60257
Tssr60258 6 34903363 to 34903368 5 - TSS region transcription start site region 60258
Tssr60259 6 34906810 to 34906828 18 - TSS region transcription start site region 60259
Tssr55569 6 34907525 to 34907537 12 + TSS region transcription start site region 55569
Tssr60260 6 34907854 to 34907892 38 - TSS region transcription start site region 60260
Tssr60261 6 34907895 to 34907917 22 - TSS region transcription start site region 60261
Tssr55570 6 34908074 to 34908105 31 + TSS region transcription start site region 55570
Tssr60262 6 34910353 to 34910381 28 - TSS region transcription start site region 60262
Cpgi17287 6 34910386 to 34911129 743 CpG island CpG island 17287
Tssr60263 6 34910447 to 34910462 15 - TSS region transcription start site region 60263
Tssr60264 6 34910502 to 34910515 13 - TSS region transcription start site region 60264
Tssr60265 6 34910525 to 34910543 18 - TSS region transcription start site region 60265
Tssr60266 6 34910552 to 34910588 36 - TSS region transcription start site region 60266
Tssr60267 6 34910602 to 34910629 27 - TSS region transcription start site region 60267
Tssr60268 6 34910823 to 34910863 40 - TSS region transcription start site region 60268
Tssr60269 6 34910869 to 34910887 18 - TSS region transcription start site region 60269
Stra8 6 34920163 to 34939344 19181 + protein coding gene stimulated by retinoic acid gene 8
Tssr55571 6 34920914 to 34920916 2 + TSS region transcription start site region 55571
Tssr55572 6 34920941 to 34920954 13 + TSS region transcription start site region 55572
Tssr55573 6 34920971 to 34920973 2 + TSS region transcription start site region 55573
Cpgi17288 6 34920974 to 34921463 489 CpG island CpG island 17288
Slc23a4 6 34945278 to 34988404 43126 - protein coding gene solute carrier family 23 member 4
Cpgi17289 6 34948718 to 34949081 363 CpG island CpG island 17289
Cpgi17290 6 34988140 to 34988371 231 CpG island CpG island 17290
Tssr60270 6 34988438 to 34988455 17 - TSS region transcription start site region 60270
Cpgi17291 6 34995328 to 34995484 156 CpG island CpG island 17291
Cnot4 6 35022065 to 35133724 111659 - protein coding gene CCR4-NOT transcription complex, subunit 4
Tssr60271 6 35065016 to 35065022 6 - TSS region transcription start site region 60271
Tssr60272 6 35086132 to 35086136 4 - TSS region transcription start site region 60272
Tssr60273 6 35090686 to 35090690 4 - TSS region transcription start site region 60273
Tssr60274 6 35100962 to 35100979 17 - TSS region transcription start site region 60274
Tssr60275 6 35112630 to 35112634 4 - TSS region transcription start site region 60275
A230071A22Rik 6 35121521 to 35123927 2406 unclassified gene RIKEN cDNA A230071A22 gene
Cpgi17292 6 35133088 to 35134172 1084 CpG island CpG island 17292
Gm33046 6 35133613 to 35152142 18529 + lncRNA gene predicted gene, 33046
Tssr60276 6 35133688 to 35133730 42 - TSS region transcription start site region 60276
Tssr60277 6 35133731 to 35133742 11 - TSS region transcription start site region 60277
Tssr55574 6 35133873 to 35133894 21 + TSS region transcription start site region 55574
Cpgi17293 6 35177345 to 35178483 1138 CpG island CpG island 17293
Tssr55575 6 35177386 to 35177426 40 + TSS region transcription start site region 55575
Tssr55576 6 35177610 to 35177627 17 + TSS region transcription start site region 55576
Nup205 6 35177616 to 35247599 69983 + protein coding gene nucleoporin 205
Tssr55577 6 35177718 to 35177758 40 + TSS region transcription start site region 55577
Tssr55578 6 35177814 to 35177826 12 + TSS region transcription start site region 55578
Tssr55579 6 35177841 to 35177860 19 + TSS region transcription start site region 55579
Tssr55580 6 35177895 to 35177936 41 + TSS region transcription start site region 55580
Tssr55581 6 35178104 to 35178114 10 + TSS region transcription start site region 55581
Tssr55582 6 35178119 to 35178139 20 + TSS region transcription start site region 55582
Tssr55583 6 35185239 to 35185244 5 + TSS region transcription start site region 55583
Tssr55584 6 35205431 to 35205445 14 + TSS region transcription start site region 55584
Tssr55585 6 35236512 to 35236556 44 + TSS region transcription start site region 55585
Gm23435 6 35243595 to 35243750 155 + snRNA gene predicted gene, 23435
D6Mit1007 6 35246334 to 35246660 326 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 1007
Cpgi17294 6 35252410 to 35253307 897 CpG island CpG island 17294
Tssr55586 6 35252670 to 35252681 11 + TSS region transcription start site region 55586
Tssr55587 6 35252692 to 35252717 25 + TSS region transcription start site region 55587
1810058I24Rik 6 35252699 to 35262059 9360 + lincRNA gene RIKEN cDNA 1810058I24 gene
Tssr55588 6 35252724 to 35252752 28 + TSS region transcription start site region 55588
Tssr60278 6 35253091 to 35253104 13 - TSS region transcription start site region 60278
Tssr60279 6 35256798 to 35256815 17 - TSS region transcription start site region 60279
Tssr55589 6 35261275 to 35261291 16 + TSS region transcription start site region 55589
Tssr55590 6 35261362 to 35261413 51 + TSS region transcription start site region 55590
Tssr55591 6 35266108 to 35266113 5 + TSS region transcription start site region 55591
Slc13a4 6 35267953 to 35308126 40173 - protein coding gene solute carrier family 13 (sodium/sulfate symporters), member 4
Cpgi17295 6 35270323 to 35270531 208 CpG island CpG island 17295
Cpgi17296 6 35307367 to 35307529 162 CpG island CpG island 17296
Tssr60280 6 35307944 to 35307949 5 - TSS region transcription start site region 60280
Tssr60281 6 35308110 to 35308136 26 - TSS region transcription start site region 60281
Fam180a 6 35312746 to 35326141 13395 - protein coding gene family with sequence similarity 180, member A
Gm38788 6 35313154 to 35322319 9165 + lncRNA gene predicted gene, 38788
D6Mit77 6 35324650 to 35324774 124 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 77
Tssr60282 6 35325999 to 35326047 48 - TSS region transcription start site region 60282
Tssr60283 6 35326073 to 35326089 16 - TSS region transcription start site region 60283
Tssr60284 6 35326123 to 35326155 32 - TSS region transcription start site region 60284
1700065J11Rik 6 35330846 to 35336825 5979 + lincRNA gene RIKEN cDNA 1700065J11 gene
Cpgi17297 6 35366430 to 35366737 307 CpG island CpG island 17297
Tssr55592 6 35411971 to 35411978 7 + TSS region transcription start site region 55592
Gm38789 6 35412804 to 35419014 6210 + lncRNA gene predicted gene, 38789
Mtpn 6 35508906 to 35539888 30982 - protein coding gene myotrophin
Tssr60285 6 35510031 to 35510038 7 - TSS region transcription start site region 60285
Tssr60286 6 35510044 to 35510055 11 - TSS region transcription start site region 60286
Tssr60287 6 35510056 to 35510068 12 - TSS region transcription start site region 60287
Tssr60288 6 35510069 to 35510101 32 - TSS region transcription start site region 60288
Tssr60289 6 35510231 to 35510240 9 - TSS region transcription start site region 60289
Tssr60290 6 35510269 to 35510281 12 - TSS region transcription start site region 60290
Tssr60291 6 35510286 to 35510327 41 - TSS region transcription start site region 60291
Tssr60292 6 35510333 to 35510344 11 - TSS region transcription start site region 60292
Tssr60293 6 35510353 to 35510364 11 - TSS region transcription start site region 60293
Tssr60294 6 35510377 to 35510387 10 - TSS region transcription start site region 60294
Tssr60295 6 35510397 to 35510408 11 - TSS region transcription start site region 60295
Tssr60296 6 35510548 to 35510570 22 - TSS region transcription start site region 60296
Tssr55593 6 35510565 to 35510578 13 + TSS region transcription start site region 55593
Tssr60297 6 35510594 to 35510615 21 - TSS region transcription start site region 60297
Tssr60298 6 35510659 to 35510729 70 - TSS region transcription start site region 60298
Tssr60299 6 35510750 to 35510764 14 - TSS region transcription start site region 60299
Tssr60300 6 35510765 to 35510789 24 - TSS region transcription start site region 60300
Tssr60301 6 35511115 to 35511148 33 - TSS region transcription start site region 60301
Tssr60302 6 35511354 to 35511381 27 - TSS region transcription start site region 60302
Tssr60303 6 35511481 to 35511492 11 - TSS region transcription start site region 60303
Tssr60304 6 35511497 to 35511509 12 - TSS region transcription start site region 60304
Tssr60305 6 35511513 to 35511534 21 - TSS region transcription start site region 60305
Tssr60306 6 35511594 to 35511618 24 - TSS region transcription start site region 60306
Tssr60307 6 35511703 to 35511724 21 - TSS region transcription start site region 60307
Tssr60308 6 35512005 to 35512041 36 - TSS region transcription start site region 60308
Tssr60309 6 35512059 to 35512072 13 - TSS region transcription start site region 60309
Tssr60310 6 35512160 to 35512224 64 - TSS region transcription start site region 60310
Tssr60311 6 35520968 to 35520975 7 - TSS region transcription start site region 60311
Gm23053 6 35524543 to 35524638 95 - miRNA gene predicted gene, 23053
Tssr60312 6 35538241 to 35538283 42 - TSS region transcription start site region 60312
Cpgi17298 6 35539126 to 35540064 938 CpG island CpG island 17298
Tssr60313 6 35539707 to 35539718 11 - TSS region transcription start site region 60313
Tssr60314 6 35539747 to 35539760 13 - TSS region transcription start site region 60314
Tssr60315 6 35539765 to 35539823 58 - TSS region transcription start site region 60315
D6Mit79 6 35558145 to 35558264 119 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 79
Gm42931 6 35611089 to 35615669 4580 - lincRNA gene predicted gene 42931
Cpgi17299 6 35816777 to 35816973 196 CpG island CpG island 17299
Tssr1813 6 35882529 to 35882536 7 + TSS region transcription start site region 1813
9030409K20Rik 6 35883281 to 35885441 2160 unclassified gene RIKEN cDNA 9030409K20 gene
Gm43442 6 35926711 to 35927124 413 + pseudogene predicted gene 43442
Gm38790 6 35965879 to 35999695 33816 - lncRNA gene predicted gene, 38790
Gm23273 6 35975330 to 35975464 134 + snoRNA gene predicted gene, 23273
Tssr60316 6 35989016 to 35989027 11 - TSS region transcription start site region 60316
Tssr60317 6 35994652 to 35994655 3 - TSS region transcription start site region 60317
Tssr55594 6 35996994 to 35997007 13 + TSS region transcription start site region 55594
Tssr55595 6 35997011 to 35997034 23 + TSS region transcription start site region 55595
Tssr55596 6 35997080 to 35997091 11 + TSS region transcription start site region 55596
Tssr60318 6 35998666 to 35998674 8 - TSS region transcription start site region 60318
Tssr60319 6 36179774 to 36179804 30 - TSS region transcription start site region 60319
Gm43443 6 36186707 to 36189099 2392 - unclassified gene predicted gene 43443
Tssr1814 6 36195415 to 36195419 4 - TSS region transcription start site region 1814
9330158H04Rik 6 36333138 to 36388234 55096 - lincRNA gene RIKEN cDNA 9330158H04 gene
Tssr55597 6 36365004 to 36365005 1 + TSS region transcription start site region 55597
Tssr60320 6 36387845 to 36387861 16 - TSS region transcription start site region 60320
Cpgi17300 6 36387867 to 36388821 954 CpG island CpG island 17300
Tssr55598 6 36387967 to 36388027 60 + TSS region transcription start site region 55598
Tssr55599 6 36388039 to 36388053 14 + TSS region transcription start site region 55599
Tssr55600 6 36388055 to 36388070 15 + TSS region transcription start site region 55600
Chrm2 6 36388084 to 36528414 140330 + protein coding gene cholinergic receptor, muscarinic 2, cardiac
Tssr55601 6 36388186 to 36388207 21 + TSS region transcription start site region 55601
Tssr55602 6 36388209 to 36388221 12 + TSS region transcription start site region 55602
Tssr55603 6 36388581 to 36388616 35 + TSS region transcription start site region 55603
Tssr60321 6 36388915 to 36388918 3 - TSS region transcription start site region 60321
Tssr55604 6 36389154 to 36389173 19 + TSS region transcription start site region 55604
Tssr55605 6 36389321 to 36389334 13 + TSS region transcription start site region 55605
Tssr55606 6 36389389 to 36389407 18 + TSS region transcription start site region 55606
Tssr55607 6 36389408 to 36389419 11 + TSS region transcription start site region 55607
Tssr55608 6 36389431 to 36389440 9 + TSS region transcription start site region 55608
Mir490 6 36421742 to 36421825 83 + miRNA gene microRNA 490
Gm43441 6 36587777 to 36587981 204 + pseudogene predicted gene 43441
Gmmq4 6 36639411 to 36639411 0 QTL gastrocnemius muscle mass QTL 4
Tammq4 6 36639411 to 36639411 0 QTL tibialis anterior muscle mass QTL 4
Edlmmq5 6 36639411 to 36639411 0 QTL extensor digitorum longus muscle mass QTL 5
Gm2189 6 36639838 to 36640266 428 - pseudogene predicted gene 2189
Gm25111 6 36699397 to 36699543 146 + miRNA gene predicted gene, 25111
Ptn 6 36714929 to 36810220 95291 - protein coding gene pleiotrophin
Tssr60322 6 36715047 to 36715051 4 - TSS region transcription start site region 60322
Tssr60323 6 36715421 to 36715431 10 - TSS region transcription start site region 60323
Tssr60324 6 36715465 to 36715474 9 - TSS region transcription start site region 60324
Tssr60325 6 36715480 to 36715492 12 - TSS region transcription start site region 60325
Tssr60326 6 36715501 to 36715520 19 - TSS region transcription start site region 60326
Tssr60327 6 36715568 to 36715573 5 - TSS region transcription start site region 60327
Tssr60328 6 36715592 to 36715664 72 - TSS region transcription start site region 60328
Tssr60329 6 36715668 to 36715685 17 - TSS region transcription start site region 60329
Tssr60330 6 36715696 to 36715715 19 - TSS region transcription start site region 60330
Tssr55609 6 36715701 to 36715736 35 + TSS region transcription start site region 55609
Tssr60331 6 36738881 to 36738884 3 - TSS region transcription start site region 60331
Tssr60332 6 36741391 to 36741415 24 - TSS region transcription start site region 60332
Tssr60333 6 36741429 to 36741440 11 - TSS region transcription start site region 60333
Tssr60334 6 36743045 to 36743050 5 - TSS region transcription start site region 60334
Tssr60335 6 36743371 to 36743400 29 - TSS region transcription start site region 60335
Tssr60336 6 36743404 to 36743419 15 - TSS region transcription start site region 60336
Tssr60337 6 36809938 to 36809974 36 - TSS region transcription start site region 60337
Tssr60338 6 36809981 to 36810000 19 - TSS region transcription start site region 60338
Tssr60339 6 36810003 to 36810024 21 - TSS region transcription start site region 60339
Tssr60340 6 36810038 to 36810057 19 - TSS region transcription start site region 60340