Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:34470502-35350515

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180 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Obrq2a 6 31717406 to 34870960 3153554 QTL obesity resistance QTL 2a
Cpgi17283 6 34476126 to 34476525 399 CpG island CpG island 17283
Bpgm 6 34476253 to 34505610 29357 + protein coding gene 2,3-bisphosphoglycerate mutase
Tssr55509 6 34476286 to 34476362 76 + TSS region transcription start site region 55509
Tssr55510 6 34486258 to 34486292 34 + TSS region transcription start site region 55510
Tssr55511 6 34486622 to 34486642 20 + TSS region transcription start site region 55511
Gm13860 6 34533553 to 34541387 7834 + lincRNA gene predicted gene 13860
Gm32942 6 34534065 to 34536907 2842 - lncRNA gene predicted gene, 32942
Tssr55512 6 34598327 to 34598334 7 + TSS region transcription start site region 55512
Cald1 6 34598496 to 34775469 176973 + protein coding gene caldesmon 1
Tssr55513 6 34598518 to 34598529 11 + TSS region transcription start site region 55513
Tssr55514 6 34598530 to 34598587 57 + TSS region transcription start site region 55514
Tssr55515 6 34598595 to 34598606 11 + TSS region transcription start site region 55515
Tssr55516 6 34598615 to 34598626 11 + TSS region transcription start site region 55516
Tssr60239 6 34599876 to 34599892 16 - TSS region transcription start site region 60239
Tssr55517 6 34606445 to 34606449 4 + TSS region transcription start site region 55517
Gm13861 6 34651354 to 34653894 2540 - lincRNA gene predicted gene 13861
Tssr55518 6 34662167 to 34662191 24 + TSS region transcription start site region 55518
Tssr55519 6 34682936 to 34682975 39 + TSS region transcription start site region 55519
Tssr55520 6 34685094 to 34685105 11 + TSS region transcription start site region 55520
Tssr55521 6 34685108 to 34685130 22 + TSS region transcription start site region 55521
Tssr55522 6 34709438 to 34709446 8 + TSS region transcription start site region 55522
Tssr55523 6 34709473 to 34709497 24 + TSS region transcription start site region 55523
Tssr55524 6 34709517 to 34709542 25 + TSS region transcription start site region 55524
Tssr55525 6 34709575 to 34709586 11 + TSS region transcription start site region 55525
Tssr55526 6 34709610 to 34709635 25 + TSS region transcription start site region 55526
Gm38787 6 34712295 to 34713160 865 - lncRNA gene predicted gene, 38787
Tssr60240 6 34713162 to 34713174 12 - TSS region transcription start site region 60240
Npn2 6 34726672 to 34726906 234 - antisense lncRNA gene neoplastic progression 2
Gm14547 6 34727221 to 34735389 8168 - antisense lncRNA gene predicted gene 14547
Spqq2 6 34734663 to 34734784 121 QTL sperm quality QTL 2
Pcd4ts1 6 34734663 to 34734784 121 QTL p-glycoprotein positive CD4 T cell subset 1
D6Mit268 6 34734663 to 34734784 121 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 268
Fglu 6 34734663 to 34734784 121 QTL fasting glucose
Cia6b 6 34734663 to 38969603 4234940 QTL collagen induced arthritis QTL 6b
Tssr60241 6 34741819 to 34741840 21 - TSS region transcription start site region 60241
Tssr55527 6 34745635 to 34745640 5 + TSS region transcription start site region 55527
Tssr55528 6 34745660 to 34745690 30 + TSS region transcription start site region 55528
Tssr55529 6 34745691 to 34745728 37 + TSS region transcription start site region 55529
Tssr55530 6 34745734 to 34745749 15 + TSS region transcription start site region 55530
Tssr55531 6 34745753 to 34745771 18 + TSS region transcription start site region 55531
Tssr55532 6 34745779 to 34745789 10 + TSS region transcription start site region 55532
Tssr55533 6 34745794 to 34745808 14 + TSS region transcription start site region 55533
Tssr55534 6 34745841 to 34745854 13 + TSS region transcription start site region 55534
Tssr55535 6 34745858 to 34745867 9 + TSS region transcription start site region 55535
Tssr55536 6 34745873 to 34745892 19 + TSS region transcription start site region 55536
Tssr55537 6 34745894 to 34745910 16 + TSS region transcription start site region 55537
Tssr60242 6 34745935 to 34746010 75 - TSS region transcription start site region 60242
Tssr55538 6 34745970 to 34745980 10 + TSS region transcription start site region 55538
Tssr55539 6 34745991 to 34746004 13 + TSS region transcription start site region 55539
Tssr60243 6 34746016 to 34746046 30 - TSS region transcription start site region 60243
Tssr55540 6 34746029 to 34746042 13 + TSS region transcription start site region 55540
Tssr55541 6 34746082 to 34746096 14 + TSS region transcription start site region 55541
Tssr60244 6 34746138 to 34746159 21 - TSS region transcription start site region 60244
Tssr55542 6 34746216 to 34746227 11 + TSS region transcription start site region 55542
Tssr60245 6 34746219 to 34746246 27 - TSS region transcription start site region 60245
Tssr55543 6 34746272 to 34746291 19 + TSS region transcription start site region 55543
Tssr60246 6 34746290 to 34746307 17 - TSS region transcription start site region 60246
Tssr55544 6 34746368 to 34746393 25 + TSS region transcription start site region 55544
Tssr60247 6 34746382 to 34746393 11 - TSS region transcription start site region 60247
Tssr60248 6 34746398 to 34746444 46 - TSS region transcription start site region 60248
Tssr55545 6 34746425 to 34746437 12 + TSS region transcription start site region 55545
Tssr60249 6 34746460 to 34746574 114 - TSS region transcription start site region 60249
Tssr55546 6 34746461 to 34746473 12 + TSS region transcription start site region 55546
Tssr55547 6 34746544 to 34746557 13 + TSS region transcription start site region 55547
Tssr55548 6 34751574 to 34751578 4 + TSS region transcription start site region 55548
Tssr55549 6 34753587 to 34753591 4 + TSS region transcription start site region 55549
Tssr55550 6 34755653 to 34755683 30 + TSS region transcription start site region 55550
Tssr55551 6 34755689 to 34755726 37 + TSS region transcription start site region 55551
Cpgi17284 6 34755709 to 34755921 212 CpG island CpG island 17284
Tssr60250 6 34755815 to 34755885 70 - TSS region transcription start site region 60250
Tssr55552 6 34768780 to 34768783 3 + TSS region transcription start site region 55552
Tssr55553 6 34773894 to 34773932 38 + TSS region transcription start site region 55553
Tssr55554 6 34774034 to 34774040 6 + TSS region transcription start site region 55554
Tssr55555 6 34774239 to 34774266 27 + TSS region transcription start site region 55555
Cpgi17285 6 34780228 to 34781133 905 CpG island CpG island 17285
Tssr55556 6 34780412 to 34780467 55 + TSS region transcription start site region 55556
Agbl3 6 34780432 to 34859459 79027 + protein coding gene ATP/GTP binding protein-like 3
Tssr55557 6 34780836 to 34780905 69 + TSS region transcription start site region 55557
Tssr55558 6 34780940 to 34780988 48 + TSS region transcription start site region 55558
Gm13864 6 34786679 to 34787463 784 + pseudogene predicted gene 13864
Gm13862 6 34810631 to 34810827 196 - pseudogene predicted gene 13862
Gm13863 6 34820204 to 34820899 695 - pseudogene predicted gene 13863
Tssr60251 6 34824449 to 34824465 16 - TSS region transcription start site region 60251
Gm46957 6 34841335 to 34849543 8208 - lncRNA gene predicted gene, 46957
Gm43748 6 34859705 to 34860937 1232 + unclassified gene predicted gene 43748
Tssr60252 6 34862572 to 34862613 41 - TSS region transcription start site region 60252
Tssr55559 6 34863101 to 34863112 11 + TSS region transcription start site region 55559
Tssr55560 6 34863114 to 34863120 6 + TSS region transcription start site region 55560
Tssr55561 6 34863130 to 34863183 53 + TSS region transcription start site region 55561
Tmem140 6 34863146 to 34874946 11800 + protein coding gene transmembrane protein 140
Tssr55562 6 34863218 to 34863241 23 + TSS region transcription start site region 55562
Tssr55563 6 34865089 to 34865095 6 + TSS region transcription start site region 55563
Tssr55564 6 34866349 to 34866386 37 + TSS region transcription start site region 55564
Tssr55565 6 34866963 to 34866972 9 + TSS region transcription start site region 55565
Cyren 6 34871771 to 34878060 6289 - protein coding gene cell cycle regulator of NHEJ
Tssr55566 6 34873354 to 34873365 11 + TSS region transcription start site region 55566
Tssr55567 6 34873375 to 34873390 15 + TSS region transcription start site region 55567
Tssr55568 6 34873392 to 34873404 12 + TSS region transcription start site region 55568
Tssr60253 6 34873523 to 34873546 23 - TSS region transcription start site region 60253
Tssr60254 6 34875608 to 34875628 20 - TSS region transcription start site region 60254
Tssr60255 6 34875644 to 34875674 30 - TSS region transcription start site region 60255
Cpgi17286 6 34877637 to 34878584 947 CpG island CpG island 17286
Tssr60256 6 34878006 to 34878078 72 - TSS region transcription start site region 60256
Wdr91 6 34880426 to 34910876 30450 - protein coding gene WD repeat domain 91
Tssr60257 6 34893575 to 34893599 24 - TSS region transcription start site region 60257
Tssr60258 6 34903363 to 34903368 5 - TSS region transcription start site region 60258
Tssr60259 6 34906810 to 34906828 18 - TSS region transcription start site region 60259
Tssr55569 6 34907525 to 34907537 12 + TSS region transcription start site region 55569
Tssr60260 6 34907854 to 34907892 38 - TSS region transcription start site region 60260
Tssr60261 6 34907895 to 34907917 22 - TSS region transcription start site region 60261
Tssr55570 6 34908074 to 34908105 31 + TSS region transcription start site region 55570
Tssr60262 6 34910353 to 34910381 28 - TSS region transcription start site region 60262
Cpgi17287 6 34910386 to 34911129 743 CpG island CpG island 17287
Tssr60263 6 34910447 to 34910462 15 - TSS region transcription start site region 60263
Tssr60264 6 34910502 to 34910515 13 - TSS region transcription start site region 60264
Tssr60265 6 34910525 to 34910543 18 - TSS region transcription start site region 60265
Tssr60266 6 34910552 to 34910588 36 - TSS region transcription start site region 60266
Tssr60267 6 34910602 to 34910629 27 - TSS region transcription start site region 60267
Tssr60268 6 34910823 to 34910863 40 - TSS region transcription start site region 60268
Tssr60269 6 34910869 to 34910887 18 - TSS region transcription start site region 60269
Stra8 6 34920163 to 34939344 19181 + protein coding gene stimulated by retinoic acid gene 8
Tssr55571 6 34920914 to 34920916 2 + TSS region transcription start site region 55571
Tssr55572 6 34920941 to 34920954 13 + TSS region transcription start site region 55572
Tssr55573 6 34920971 to 34920973 2 + TSS region transcription start site region 55573
Cpgi17288 6 34920974 to 34921463 489 CpG island CpG island 17288
Slc23a4 6 34945278 to 34988404 43126 - protein coding gene solute carrier family 23 member 4
Cpgi17289 6 34948718 to 34949081 363 CpG island CpG island 17289
Cpgi17290 6 34988140 to 34988371 231 CpG island CpG island 17290
Tssr60270 6 34988438 to 34988455 17 - TSS region transcription start site region 60270
Cpgi17291 6 34995328 to 34995484 156 CpG island CpG island 17291
Cnot4 6 35022065 to 35133724 111659 - protein coding gene CCR4-NOT transcription complex, subunit 4
Tssr60271 6 35065016 to 35065022 6 - TSS region transcription start site region 60271
Tssr60272 6 35086132 to 35086136 4 - TSS region transcription start site region 60272
Tssr60273 6 35090686 to 35090690 4 - TSS region transcription start site region 60273
Tssr60274 6 35100962 to 35100979 17 - TSS region transcription start site region 60274
Tssr60275 6 35112630 to 35112634 4 - TSS region transcription start site region 60275
A230071A22Rik 6 35121521 to 35123927 2406 unclassified gene RIKEN cDNA A230071A22 gene
Cpgi17292 6 35133088 to 35134172 1084 CpG island CpG island 17292
Gm33046 6 35133613 to 35152142 18529 + lncRNA gene predicted gene, 33046
Tssr60276 6 35133688 to 35133730 42 - TSS region transcription start site region 60276
Tssr60277 6 35133731 to 35133742 11 - TSS region transcription start site region 60277
Tssr55574 6 35133873 to 35133894 21 + TSS region transcription start site region 55574
Cpgi17293 6 35177345 to 35178483 1138 CpG island CpG island 17293
Tssr55575 6 35177386 to 35177426 40 + TSS region transcription start site region 55575
Tssr55576 6 35177610 to 35177627 17 + TSS region transcription start site region 55576
Nup205 6 35177616 to 35247599 69983 + protein coding gene nucleoporin 205
Tssr55577 6 35177718 to 35177758 40 + TSS region transcription start site region 55577
Tssr55578 6 35177814 to 35177826 12 + TSS region transcription start site region 55578
Tssr55579 6 35177841 to 35177860 19 + TSS region transcription start site region 55579
Tssr55580 6 35177895 to 35177936 41 + TSS region transcription start site region 55580
Tssr55581 6 35178104 to 35178114 10 + TSS region transcription start site region 55581
Tssr55582 6 35178119 to 35178139 20 + TSS region transcription start site region 55582
Tssr55583 6 35185239 to 35185244 5 + TSS region transcription start site region 55583
Tssr55584 6 35205431 to 35205445 14 + TSS region transcription start site region 55584
Tssr55585 6 35236512 to 35236556 44 + TSS region transcription start site region 55585
Gm23435 6 35243595 to 35243750 155 + snRNA gene predicted gene, 23435
D6Mit1007 6 35246334 to 35246660 326 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 1007
Cpgi17294 6 35252410 to 35253307 897 CpG island CpG island 17294
Tssr55586 6 35252670 to 35252681 11 + TSS region transcription start site region 55586
Tssr55587 6 35252692 to 35252717 25 + TSS region transcription start site region 55587
1810058I24Rik 6 35252699 to 35262059 9360 + lincRNA gene RIKEN cDNA 1810058I24 gene
Tssr55588 6 35252724 to 35252752 28 + TSS region transcription start site region 55588
Tssr60278 6 35253091 to 35253104 13 - TSS region transcription start site region 60278
Tssr60279 6 35256798 to 35256815 17 - TSS region transcription start site region 60279
Tssr55589 6 35261275 to 35261291 16 + TSS region transcription start site region 55589
Tssr55590 6 35261362 to 35261413 51 + TSS region transcription start site region 55590
Tssr55591 6 35266108 to 35266113 5 + TSS region transcription start site region 55591
Slc13a4 6 35267953 to 35308126 40173 - protein coding gene solute carrier family 13 (sodium/sulfate symporters), member 4
Cpgi17295 6 35270323 to 35270531 208 CpG island CpG island 17295
Cpgi17296 6 35307367 to 35307529 162 CpG island CpG island 17296
Tssr60280 6 35307944 to 35307949 5 - TSS region transcription start site region 60280
Tssr60281 6 35308110 to 35308136 26 - TSS region transcription start site region 60281
Fam180a 6 35312746 to 35326141 13395 - protein coding gene family with sequence similarity 180, member A
Gm38788 6 35313154 to 35322319 9165 + lncRNA gene predicted gene, 38788
D6Mit77 6 35324650 to 35324774 124 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 77
Tssr60282 6 35325999 to 35326047 48 - TSS region transcription start site region 60282
Tssr60283 6 35326073 to 35326089 16 - TSS region transcription start site region 60283
Tssr60284 6 35326123 to 35326155 32 - TSS region transcription start site region 60284
1700065J11Rik 6 35330846 to 35336825 5979 + lincRNA gene RIKEN cDNA 1700065J11 gene