Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:34093530-35103587

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189 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Obrq2a 6 31717406 to 34870960 3153554 QTL obesity resistance QTL 2a
Lrguk 6 34029448 to 34134034 104586 + protein coding gene leucine-rich repeats and guanylate kinase domain containing
Gm13856 6 34151929 to 34174235 22306 + antisense lncRNA gene predicted gene 13856
Slc35b4 6 34155875 to 34177077 21202 - protein coding gene solute carrier family 35, member B4
D6Mit310 6 34162506 to 34162627 121 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 310
Tssr60225 6 34172038 to 34172043 5 - TSS region transcription start site region 60225
Cpgi17281 6 34176517 to 34177261 744 CpG island CpG island 17281
Tssr60226 6 34176918 to 34176932 14 - TSS region transcription start site region 60226
Tssr60227 6 34176941 to 34177014 73 - TSS region transcription start site region 60227
Tssr60228 6 34177021 to 34177041 20 - TSS region transcription start site region 60228
Tssr60229 6 34177048 to 34177071 23 - TSS region transcription start site region 60229
Gm13855 6 34177168 to 34179377 2209 + lincRNA gene predicted gene 13855
Tssr1809 6 34179189 to 34179200 11 + TSS region transcription start site region 1809
Tssr55493 6 34179226 to 34179246 20 + TSS region transcription start site region 55493
Tssr55494 6 34179254 to 34179285 31 + TSS region transcription start site region 55494
Tssr55495 6 34179301 to 34179309 8 + TSS region transcription start site region 55495
Gm32533 6 34197168 to 34227076 29908 + lncRNA gene predicted gene, 32533
Tssr1810 6 34289906 to 34289912 6 - TSS region transcription start site region 1810
Gm14546 6 34290265 to 34324249 33984 + antisense lncRNA gene predicted gene 14546
Akr1b3 6 34303930 to 34317489 13559 - protein coding gene aldo-keto reductase family 1, member B3 (aldose reductase)
Cpgi17282 6 34316967 to 34317736 769 CpG island CpG island 17282
Tssr60230 6 34317442 to 34317499 57 - TSS region transcription start site region 60230
Tssr60231 6 34345077 to 34345098 21 - TSS region transcription start site region 60231
Tssr55496 6 34354125 to 34354151 26 + TSS region transcription start site region 55496
Tssr55497 6 34354155 to 34354199 44 + TSS region transcription start site region 55497
Akr1b8 6 34354164 to 34368454 14290 + protein coding gene aldo-keto reductase family 1, member B8
Tssr55498 6 34358124 to 34358169 45 + TSS region transcription start site region 55498
D6Mit269 6 34359005 to 34359111 106 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 269
Gm13859 6 34373691 to 34374738 1047 - pseudogene predicted gene 13859
Gm13858 6 34379467 to 34380445 978 - pseudogene predicted gene 13858
Akr1b10 6 34384218 to 34396950 12732 + protein coding gene aldo-keto reductase family 1, member B10 (aldose reductase)
Tssr55499 6 34384230 to 34384335 105 + TSS region transcription start site region 55499
Tssr60232 6 34395949 to 34395957 8 - TSS region transcription start site region 60232
Tssr55500 6 34412117 to 34412128 11 + TSS region transcription start site region 55500
Tssr55501 6 34412190 to 34412202 12 + TSS region transcription start site region 55501
Tssr55502 6 34412353 to 34412373 20 + TSS region transcription start site region 55502
Akr1b7 6 34412362 to 34423137 10775 + protein coding gene aldo-keto reductase family 1, member B7
D6Mit92.1 6 34414326 to 34414483 157 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 92.1
D6Mit92.4 6 34414716 to 34414840 124 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 92.4
Tssr60233 6 34415415 to 34415426 11 - TSS region transcription start site region 60233
Tssr55503 6 34415416 to 34415425 9 + TSS region transcription start site region 55503
Tssr60234 6 34415453 to 34415458 5 - TSS region transcription start site region 60234
Tssr55504 6 34419393 to 34419409 16 + TSS region transcription start site region 55504
Tssr1811 6 34419414 to 34419417 3 + TSS region transcription start site region 1811
Tssr60235 6 34419431 to 34419445 14 - TSS region transcription start site region 60235
Tssr55505 6 34419461 to 34419468 7 + TSS region transcription start site region 55505
Tssr60236 6 34419472 to 34419483 11 - TSS region transcription start site region 60236
Tssr60237 6 34423020 to 34423038 18 - TSS region transcription start site region 60237
Tssr55506 6 34423028 to 34423046 18 + TSS region transcription start site region 55506
Tssr55507 6 34423050 to 34423065 15 + TSS region transcription start site region 55507
Tssr55508 6 34423075 to 34423091 16 + TSS region transcription start site region 55508
Tssr60238 6 34423114 to 34423138 24 - TSS region transcription start site region 60238
Tssr1812 6 34438607 to 34438610 3 + TSS region transcription start site region 1812
Gm13857 6 34442617 to 34445436 2819 - pseudogene predicted gene 13857
Cpgi17283 6 34476126 to 34476525 399 CpG island CpG island 17283
Bpgm 6 34476253 to 34505610 29357 + protein coding gene 2,3-bisphosphoglycerate mutase
Tssr55509 6 34476286 to 34476362 76 + TSS region transcription start site region 55509
Tssr55510 6 34486258 to 34486292 34 + TSS region transcription start site region 55510
Tssr55511 6 34486622 to 34486642 20 + TSS region transcription start site region 55511
Gm13860 6 34533553 to 34541387 7834 + lincRNA gene predicted gene 13860
Gm32942 6 34534065 to 34536907 2842 - lncRNA gene predicted gene, 32942
Tssr55512 6 34598327 to 34598334 7 + TSS region transcription start site region 55512
Cald1 6 34598496 to 34775469 176973 + protein coding gene caldesmon 1
Tssr55513 6 34598518 to 34598529 11 + TSS region transcription start site region 55513
Tssr55514 6 34598530 to 34598587 57 + TSS region transcription start site region 55514
Tssr55515 6 34598595 to 34598606 11 + TSS region transcription start site region 55515
Tssr55516 6 34598615 to 34598626 11 + TSS region transcription start site region 55516
Tssr60239 6 34599876 to 34599892 16 - TSS region transcription start site region 60239
Tssr55517 6 34606445 to 34606449 4 + TSS region transcription start site region 55517
Gm13861 6 34651354 to 34653894 2540 - lincRNA gene predicted gene 13861
Tssr55518 6 34662167 to 34662191 24 + TSS region transcription start site region 55518
Tssr55519 6 34682936 to 34682975 39 + TSS region transcription start site region 55519
Tssr55520 6 34685094 to 34685105 11 + TSS region transcription start site region 55520
Tssr55521 6 34685108 to 34685130 22 + TSS region transcription start site region 55521
Tssr55522 6 34709438 to 34709446 8 + TSS region transcription start site region 55522
Tssr55523 6 34709473 to 34709497 24 + TSS region transcription start site region 55523
Tssr55524 6 34709517 to 34709542 25 + TSS region transcription start site region 55524
Tssr55525 6 34709575 to 34709586 11 + TSS region transcription start site region 55525
Tssr55526 6 34709610 to 34709635 25 + TSS region transcription start site region 55526
Gm38787 6 34712295 to 34713160 865 - lncRNA gene predicted gene, 38787
Tssr60240 6 34713162 to 34713174 12 - TSS region transcription start site region 60240
Npn2 6 34726672 to 34726906 234 - antisense lncRNA gene neoplastic progression 2
Gm14547 6 34727221 to 34735389 8168 - antisense lncRNA gene predicted gene 14547
Cia6b 6 34734663 to 38969603 4234940 QTL collagen induced arthritis QTL 6b
Pcd4ts1 6 34734663 to 34734784 121 QTL p-glycoprotein positive CD4 T cell subset 1
Fglu 6 34734663 to 34734784 121 QTL fasting glucose
Spqq2 6 34734663 to 34734784 121 QTL sperm quality QTL 2
D6Mit268 6 34734663 to 34734784 121 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 268
Tssr60241 6 34741819 to 34741840 21 - TSS region transcription start site region 60241
Tssr55527 6 34745635 to 34745640 5 + TSS region transcription start site region 55527
Tssr55528 6 34745660 to 34745690 30 + TSS region transcription start site region 55528
Tssr55529 6 34745691 to 34745728 37 + TSS region transcription start site region 55529
Tssr55530 6 34745734 to 34745749 15 + TSS region transcription start site region 55530
Tssr55531 6 34745753 to 34745771 18 + TSS region transcription start site region 55531
Tssr55532 6 34745779 to 34745789 10 + TSS region transcription start site region 55532
Tssr55533 6 34745794 to 34745808 14 + TSS region transcription start site region 55533
Tssr55534 6 34745841 to 34745854 13 + TSS region transcription start site region 55534
Tssr55535 6 34745858 to 34745867 9 + TSS region transcription start site region 55535
Tssr55536 6 34745873 to 34745892 19 + TSS region transcription start site region 55536
Tssr55537 6 34745894 to 34745910 16 + TSS region transcription start site region 55537
Tssr60242 6 34745935 to 34746010 75 - TSS region transcription start site region 60242
Tssr55538 6 34745970 to 34745980 10 + TSS region transcription start site region 55538
Tssr55539 6 34745991 to 34746004 13 + TSS region transcription start site region 55539
Tssr60243 6 34746016 to 34746046 30 - TSS region transcription start site region 60243
Tssr55540 6 34746029 to 34746042 13 + TSS region transcription start site region 55540
Tssr55541 6 34746082 to 34746096 14 + TSS region transcription start site region 55541
Tssr60244 6 34746138 to 34746159 21 - TSS region transcription start site region 60244
Tssr55542 6 34746216 to 34746227 11 + TSS region transcription start site region 55542
Tssr60245 6 34746219 to 34746246 27 - TSS region transcription start site region 60245
Tssr55543 6 34746272 to 34746291 19 + TSS region transcription start site region 55543
Tssr60246 6 34746290 to 34746307 17 - TSS region transcription start site region 60246
Tssr55544 6 34746368 to 34746393 25 + TSS region transcription start site region 55544
Tssr60247 6 34746382 to 34746393 11 - TSS region transcription start site region 60247
Tssr60248 6 34746398 to 34746444 46 - TSS region transcription start site region 60248
Tssr55545 6 34746425 to 34746437 12 + TSS region transcription start site region 55545
Tssr60249 6 34746460 to 34746574 114 - TSS region transcription start site region 60249
Tssr55546 6 34746461 to 34746473 12 + TSS region transcription start site region 55546
Tssr55547 6 34746544 to 34746557 13 + TSS region transcription start site region 55547
Tssr55548 6 34751574 to 34751578 4 + TSS region transcription start site region 55548
Tssr55549 6 34753587 to 34753591 4 + TSS region transcription start site region 55549
Tssr55550 6 34755653 to 34755683 30 + TSS region transcription start site region 55550
Tssr55551 6 34755689 to 34755726 37 + TSS region transcription start site region 55551
Cpgi17284 6 34755709 to 34755921 212 CpG island CpG island 17284
Tssr60250 6 34755815 to 34755885 70 - TSS region transcription start site region 60250
Tssr55552 6 34768780 to 34768783 3 + TSS region transcription start site region 55552
Tssr55553 6 34773894 to 34773932 38 + TSS region transcription start site region 55553
Tssr55554 6 34774034 to 34774040 6 + TSS region transcription start site region 55554
Tssr55555 6 34774239 to 34774266 27 + TSS region transcription start site region 55555
Cpgi17285 6 34780228 to 34781133 905 CpG island CpG island 17285
Tssr55556 6 34780412 to 34780467 55 + TSS region transcription start site region 55556
Agbl3 6 34780432 to 34859459 79027 + protein coding gene ATP/GTP binding protein-like 3
Tssr55557 6 34780836 to 34780905 69 + TSS region transcription start site region 55557
Tssr55558 6 34780940 to 34780988 48 + TSS region transcription start site region 55558
Gm13864 6 34786679 to 34787463 784 + pseudogene predicted gene 13864
Gm13862 6 34810631 to 34810827 196 - pseudogene predicted gene 13862
Gm13863 6 34820204 to 34820899 695 - pseudogene predicted gene 13863
Tssr60251 6 34824449 to 34824465 16 - TSS region transcription start site region 60251
Gm46957 6 34841335 to 34849543 8208 - lncRNA gene predicted gene, 46957
Gm43748 6 34859705 to 34860937 1232 + unclassified gene predicted gene 43748
Tssr60252 6 34862572 to 34862613 41 - TSS region transcription start site region 60252
Tssr55559 6 34863101 to 34863112 11 + TSS region transcription start site region 55559
Tssr55560 6 34863114 to 34863120 6 + TSS region transcription start site region 55560
Tssr55561 6 34863130 to 34863183 53 + TSS region transcription start site region 55561
Tmem140 6 34863146 to 34874946 11800 + protein coding gene transmembrane protein 140
Tssr55562 6 34863218 to 34863241 23 + TSS region transcription start site region 55562
Tssr55563 6 34865089 to 34865095 6 + TSS region transcription start site region 55563
Tssr55564 6 34866349 to 34866386 37 + TSS region transcription start site region 55564
Tssr55565 6 34866963 to 34866972 9 + TSS region transcription start site region 55565
Cyren 6 34871771 to 34878060 6289 - protein coding gene cell cycle regulator of NHEJ
Tssr55566 6 34873354 to 34873365 11 + TSS region transcription start site region 55566
Tssr55567 6 34873375 to 34873390 15 + TSS region transcription start site region 55567
Tssr55568 6 34873392 to 34873404 12 + TSS region transcription start site region 55568
Tssr60253 6 34873523 to 34873546 23 - TSS region transcription start site region 60253
Tssr60254 6 34875608 to 34875628 20 - TSS region transcription start site region 60254
Tssr60255 6 34875644 to 34875674 30 - TSS region transcription start site region 60255
Cpgi17286 6 34877637 to 34878584 947 CpG island CpG island 17286
Tssr60256 6 34878006 to 34878078 72 - TSS region transcription start site region 60256
Wdr91 6 34880426 to 34910876 30450 - protein coding gene WD repeat domain 91
Tssr60257 6 34893575 to 34893599 24 - TSS region transcription start site region 60257
Tssr60258 6 34903363 to 34903368 5 - TSS region transcription start site region 60258
Tssr60259 6 34906810 to 34906828 18 - TSS region transcription start site region 60259
Tssr55569 6 34907525 to 34907537 12 + TSS region transcription start site region 55569
Tssr60260 6 34907854 to 34907892 38 - TSS region transcription start site region 60260
Tssr60261 6 34907895 to 34907917 22 - TSS region transcription start site region 60261
Tssr55570 6 34908074 to 34908105 31 + TSS region transcription start site region 55570
Tssr60262 6 34910353 to 34910381 28 - TSS region transcription start site region 60262
Cpgi17287 6 34910386 to 34911129 743 CpG island CpG island 17287
Tssr60263 6 34910447 to 34910462 15 - TSS region transcription start site region 60263
Tssr60264 6 34910502 to 34910515 13 - TSS region transcription start site region 60264
Tssr60265 6 34910525 to 34910543 18 - TSS region transcription start site region 60265
Tssr60266 6 34910552 to 34910588 36 - TSS region transcription start site region 60266
Tssr60267 6 34910602 to 34910629 27 - TSS region transcription start site region 60267
Tssr60268 6 34910823 to 34910863 40 - TSS region transcription start site region 60268
Tssr60269 6 34910869 to 34910887 18 - TSS region transcription start site region 60269
Stra8 6 34920163 to 34939344 19181 + protein coding gene stimulated by retinoic acid gene 8
Tssr55571 6 34920914 to 34920916 2 + TSS region transcription start site region 55571
Tssr55572 6 34920941 to 34920954 13 + TSS region transcription start site region 55572
Tssr55573 6 34920971 to 34920973 2 + TSS region transcription start site region 55573
Cpgi17288 6 34920974 to 34921463 489 CpG island CpG island 17288
Slc23a4 6 34945278 to 34988404 43126 - protein coding gene solute carrier family 23 member 4
Cpgi17289 6 34948718 to 34949081 363 CpG island CpG island 17289
Cpgi17290 6 34988140 to 34988371 231 CpG island CpG island 17290
Tssr60270 6 34988438 to 34988455 17 - TSS region transcription start site region 60270
Cpgi17291 6 34995328 to 34995484 156 CpG island CpG island 17291
Cnot4 6 35022065 to 35133724 111659 - protein coding gene CCR4-NOT transcription complex, subunit 4
Tssr60271 6 35065016 to 35065022 6 - TSS region transcription start site region 60271
Tssr60272 6 35086132 to 35086136 4 - TSS region transcription start site region 60272
Tssr60273 6 35090686 to 35090690 4 - TSS region transcription start site region 60273
Tssr60274 6 35100962 to 35100979 17 - TSS region transcription start site region 60274