Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:3399088-5109334

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284 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Samd9l 6 3372257 to 3399571 27314 - protein coding gene sterile alpha motif domain containing 9-like
Tssr59689 6 3399301 to 3399315 14 - TSS region transcription start site region 59689
Tssr59690 6 3399451 to 3399464 13 - TSS region transcription start site region 59690
Tssr59691 6 3399545 to 3399574 29 - TSS region transcription start site region 59691
Hepacam2 6 3457096 to 3498298 41202 - protein coding gene HEPACAM family member 2
Tssr59692 6 3487371 to 3487419 48 - TSS region transcription start site region 59692
Tssr59693 6 3487479 to 3487484 5 - TSS region transcription start site region 59693
Tssr59694 6 3494486 to 3494526 40 - TSS region transcription start site region 59694
Tssr59695 6 3494527 to 3494542 15 - TSS region transcription start site region 59695
Tssr59696 6 3494549 to 3494563 14 - TSS region transcription start site region 59696
Tssr59697 6 3494587 to 3494598 11 - TSS region transcription start site region 59697
Tssr1765 6 3494605 to 3494612 7 - TSS region transcription start site region 1765
Cpgi17120 6 3498259 to 3498431 172 CpG island CpG island 17120
Tssr59698 6 3498301 to 3498312 11 - TSS region transcription start site region 59698
Vps50 6 3498393 to 3603531 105138 + protein coding gene VPS50 EARP/GARPII complex subunit
Tssr54697 6 3498399 to 3498439 40 + TSS region transcription start site region 54697
Tssr1766 6 3504241 to 3504245 4 + TSS region transcription start site region 1766
Tssr54698 6 3523934 to 3523942 8 + TSS region transcription start site region 54698
Tssr54699 6 3526668 to 3526679 11 + TSS region transcription start site region 54699
D6Mit231 6 3528851 to 3528953 102 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 231
Tssr1767 6 3570559 to 3570564 5 - TSS region transcription start site region 1767
Tssr59699 6 3570570 to 3570583 13 - TSS region transcription start site region 59699
Tssr54700 6 3574274 to 3574278 4 + TSS region transcription start site region 54700
Gm43294 6 3583814 to 3586303 2489 + unclassified gene predicted gene 43294
Calcr 6 3685720 to 3764732 79012 - protein coding gene calcitonin receptor
Mir653 6 3721301 to 3721385 84 - miRNA gene microRNA 653
Mir489 6 3721897 to 3722003 106 - miRNA gene microRNA 489
Cpgi17121 6 3763360 to 3764178 818 CpG island CpG island 17121
Tssr59700 6 3763618 to 3763624 6 - TSS region transcription start site region 59700
Gm33576 6 3763799 to 3807425 43626 + lncRNA gene predicted gene, 33576
Tssr54701 6 3763846 to 3763857 11 + TSS region transcription start site region 54701
Gm44221 6 3863049 to 3863436 387 - pseudogene predicted gene, 44221
Tfpi2 6 3962595 to 3988919 26324 - protein coding gene tissue factor pathway inhibitor 2
Tssr59701 6 3966406 to 3966409 3 - TSS region transcription start site region 59701
Cpgi17122 6 3968149 to 3968492 343 CpG island CpG island 17122
Tssr59702 6 3968364 to 3968381 17 - TSS region transcription start site region 59702
Tssr59703 6 3968395 to 3968417 22 - TSS region transcription start site region 59703
Tssr59704 6 3968571 to 3968610 39 - TSS region transcription start site region 59704
Tssr59705 6 3988834 to 3988881 47 - TSS region transcription start site region 59705
Tssr59706 6 3988900 to 3988941 41 - TSS region transcription start site region 59706
Tssr59707 6 3988946 to 3988964 18 - TSS region transcription start site region 59707
Tssr59708 6 3988967 to 3988987 20 - TSS region transcription start site region 59708
Tssr54702 6 3989053 to 3989077 24 + TSS region transcription start site region 54702
Tssr54703 6 3993776 to 3993789 13 + TSS region transcription start site region 54703
Gngt1 6 3993792 to 3997436 3644 + protein coding gene guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1
Tssr54704 6 3993994 to 3994000 6 + TSS region transcription start site region 54704
Tssr54705 6 3994001 to 3994016 15 + TSS region transcription start site region 54705
Tssr54706 6 3994023 to 3994027 4 + TSS region transcription start site region 54706
Tssr1768 6 3994032 to 3994036 4 + TSS region transcription start site region 1768
Tssr54707 6 4003926 to 4003942 16 + TSS region transcription start site region 54707
Tssr54708 6 4003944 to 4004028 84 + TSS region transcription start site region 54708
Gng11 6 4003987 to 4008445 4458 + protein coding gene guanine nucleotide binding protein (G protein), gamma 11
Cpgi17123 6 4004038 to 4004320 282 CpG island CpG island 17123
Tssr54709 6 4004040 to 4004057 17 + TSS region transcription start site region 54709
Tssr54710 6 4004073 to 4004078 5 + TSS region transcription start site region 54710
Tssr54711 6 4004089 to 4004100 11 + TSS region transcription start site region 54711
Tssr54712 6 4004185 to 4004196 11 + TSS region transcription start site region 54712
Tssr54713 6 4004212 to 4004223 11 + TSS region transcription start site region 54713
Tssr54714 6 4004241 to 4004274 33 + TSS region transcription start site region 54714
Tssr54715 6 4004299 to 4004302 3 + TSS region transcription start site region 54715
Tssr59709 6 4030894 to 4030901 7 - TSS region transcription start site region 59709
4930528H21Rik 6 4031841 to 4047584 15743 - lincRNA gene RIKEN cDNA 4930528H21 gene
Tssr59710 6 4047557 to 4047569 12 - TSS region transcription start site region 59710
Tssr59711 6 4047573 to 4047580 7 - TSS region transcription start site region 59711
Tssr54716 6 4047677 to 4047711 34 + TSS region transcription start site region 54716
Tssr59712 6 4069758 to 4069770 12 - TSS region transcription start site region 59712
Gm38760 6 4074145 to 4076570 2425 - lncRNA gene predicted gene, 38760
Bet1 6 4076899 to 4086972 10073 - protein coding gene Bet1 golgi vesicular membrane trafficking protein
Tssr59713 6 4086803 to 4086819 16 - TSS region transcription start site region 59713
Tssr59714 6 4086820 to 4086831 11 - TSS region transcription start site region 59714
Cpgi17124 6 4086831 to 4087114 283 CpG island CpG island 17124
Tssr59715 6 4086885 to 4086904 19 - TSS region transcription start site region 59715
Tssr59716 6 4086914 to 4086960 46 - TSS region transcription start site region 59716
Gm44055 6 4254088 to 4254334 246 - pseudogene predicted gene, 44055
Gm44057 6 4262754 to 4262849 95 - pseudogene predicted gene, 44057
Gm8602 6 4359028 to 4359634 606 + pseudogene predicted gene 8602
Gm44379 6 4364232 to 4364395 163 - unclassified gene predicted gene, 44379
Gm44380 6 4367774 to 4368066 292 + unclassified gene predicted gene, 44380
Gm46948 6 4380180 to 4465277 85097 - lncRNA gene predicted gene, 46948
Gm24442 6 4382878 to 4383204 326 + unclassified non-coding RNA gene predicted gene, 24442
Gm2522 6 4390920 to 4391241 321 + pseudogene predicted gene 2522
Gm33788 6 4423069 to 4446272 23203 + lncRNA gene predicted gene, 33788
D6Mit86 6 4464884 to 4465015 131 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 86
Cia6 6 4464884 to 87426034 82961150 QTL collagen induced arthritis QTL 6
Lith10 6 4464884 to 4465015 131 QTL lithogenic gene 10
Nhdlq5 6 4464884 to 4465015 131 QTL non-HDL QTL 5
Bhr8 6 4464884 to 4465015 131 QTL bronchial hyperresponsiveness 8
Mobq9 6 4464884 to 4465015 131 QTL multigenic obesity QTL 9
Sig 6 4464884 to 8778488 4313604 heritable phenotypic marker sightless
D6Mit84 6 4464899 to 4465019 120 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 84
Gm37883 6 4483474 to 4484198 724 - unclassified gene predicted gene, 37883
W10q11 6 4503823 to 96656149 92152326 QTL weight 10 weeks QTL 11
W6q4 6 4503823 to 96656149 92152326 QTL weight 6 weeks QTL 4
W3q3 6 4503823 to 96656149 92152326 QTL weight 3 weeks QTL 3
D6Mit138 6 4503823 to 4503937 114 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 138
Egq8 6 4503823 to 96656149 92152326 QTL early growth QTL 8
Axtq2 6 4503823 to 48726677 44222854 QTL anxiety QTL 2
Aaj2 6 4503823 to 48726677 44222854 QTL anxiety in A/J 2
Bmiq3 6 4503823 to 48726677 44222854 QTL body mass index QTL 3
Bmiq2 6 4503823 to 45314181 40810358 QTL body mass index QTL 2
Tssr54717 6 4505219 to 4505260 41 + TSS region transcription start site region 54717
Col1a2 6 4505618 to 4541543 35925 + protein coding gene collagen, type I, alpha 2
Tssr54718 6 4505695 to 4505709 14 + TSS region transcription start site region 54718
Gm43921 6 4506087 to 4507878 1791 + unclassified gene predicted gene, 43921
Tssr54719 6 4508571 to 4508592 21 + TSS region transcription start site region 54719
Tssr54720 6 4510754 to 4510771 17 + TSS region transcription start site region 54720
Tssr54721 6 4516391 to 4516413 22 + TSS region transcription start site region 54721
Tssr54722 6 4521387 to 4521423 36 + TSS region transcription start site region 54722
Tssr54723 6 4528371 to 4528385 14 + TSS region transcription start site region 54723
Tssr54724 6 4530952 to 4530966 14 + TSS region transcription start site region 54724
Tssr59717 6 4531272 to 4531294 22 - TSS region transcription start site region 59717
Tssr54725 6 4533737 to 4533768 31 + TSS region transcription start site region 54725
Tssr54726 6 4537773 to 4537798 25 + TSS region transcription start site region 54726
Tssr54727 6 4537845 to 4537879 34 + TSS region transcription start site region 54727
Tssr54728 6 4537944 to 4537956 12 + TSS region transcription start site region 54728
Tssr1769 6 4537971 to 4537980 9 + TSS region transcription start site region 1769
Tssr54729 6 4537990 to 4538010 20 + TSS region transcription start site region 54729
Tssr54730 6 4538616 to 4538645 29 + TSS region transcription start site region 54730
Tssr1770 6 4538655 to 4538668 13 + TSS region transcription start site region 1770
Tssr54731 6 4538671 to 4538690 19 + TSS region transcription start site region 54731
Tssr54732 6 4538691 to 4538777 86 + TSS region transcription start site region 54732
Tssr54733 6 4539467 to 4539474 7 + TSS region transcription start site region 54733
Tssr54734 6 4539478 to 4539491 13 + TSS region transcription start site region 54734
Tssr54735 6 4539492 to 4539502 10 + TSS region transcription start site region 54735
Tssr54736 6 4539516 to 4539528 12 + TSS region transcription start site region 54736
Tssr54737 6 4539538 to 4539545 7 + TSS region transcription start site region 54737
Tssr54738 6 4539576 to 4539588 12 + TSS region transcription start site region 54738
Tssr54739 6 4539591 to 4539600 9 + TSS region transcription start site region 54739
Tssr54740 6 4539655 to 4539677 22 + TSS region transcription start site region 54740
Tssr54741 6 4540006 to 4540016 10 + TSS region transcription start site region 54741
Tssr54742 6 4540528 to 4540542 14 + TSS region transcription start site region 54742
Tssr54743 6 4540543 to 4540573 30 + TSS region transcription start site region 54743
Tssr54744 6 4540574 to 4540585 11 + TSS region transcription start site region 54744
Tssr54745 6 4540586 to 4540591 5 + TSS region transcription start site region 54745
Tssr54746 6 4540599 to 4540620 21 + TSS region transcription start site region 54746
Tssr54747 6 4540630 to 4540671 41 + TSS region transcription start site region 54747
Tssr54748 6 4540674 to 4540679 5 + TSS region transcription start site region 54748
Tssr59718 6 4540721 to 4540735 14 - TSS region transcription start site region 59718
Tssr59719 6 4540789 to 4540832 43 - TSS region transcription start site region 59719
Tssr54749 6 4540843 to 4540852 9 + TSS region transcription start site region 54749
Tssr54750 6 4540856 to 4540861 5 + TSS region transcription start site region 54750
Tssr54751 6 4540864 to 4540875 11 + TSS region transcription start site region 54751
Tssr54752 6 4540907 to 4540922 15 + TSS region transcription start site region 54752
Tssr54753 6 4540929 to 4540946 17 + TSS region transcription start site region 54753
Tssr54754 6 4541038 to 4541055 17 + TSS region transcription start site region 54754
Tssr54755 6 4541437 to 4541448 11 + TSS region transcription start site region 54755
Gm18289 6 4570879 to 4571728 849 - pseudogene predicted gene, 18289
Gm33959 6 4584345 to 4587092 2747 - lncRNA gene predicted gene, 33959
Gm26696 6 4593804 to 4596651 2847 - lincRNA gene predicted gene, 26696
Tssr54756 6 4600334 to 4600355 21 + TSS region transcription start site region 54756
Cpgi17125 6 4600451 to 4601782 1331 CpG island CpG island 17125
Tssr54757 6 4600658 to 4600676 18 + TSS region transcription start site region 54757
Tssr54758 6 4600732 to 4600770 38 + TSS region transcription start site region 54758
Casd1 6 4600839 to 4643355 42516 + protein coding gene CAS1 domain containing 1
Tssr54759 6 4600898 to 4600956 58 + TSS region transcription start site region 54759
Tssr54760 6 4601124 to 4601164 40 + TSS region transcription start site region 54760
Gm44432 6 4610234 to 4611171 937 + unclassified gene predicted gene, 44432
Tssr54761 6 4623902 to 4623916 14 + TSS region transcription start site region 54761
Tssr54762 6 4623955 to 4623973 18 + TSS region transcription start site region 54762
Gm38761 6 4654215 to 4661370 7155 + lncRNA gene predicted gene, 38761
Sgce 6 4674350 to 4747204 72854 - protein coding gene sarcoglycan, epsilon
Tssr59720 6 4717135 to 4717166 31 - TSS region transcription start site region 59720
Tssr59721 6 4717169 to 4717184 15 - TSS region transcription start site region 59721
Tssr59722 6 4717208 to 4717223 15 - TSS region transcription start site region 59722
Tssr59723 6 4736421 to 4736441 20 - TSS region transcription start site region 59723
Tssr59724 6 4746391 to 4746395 4 - TSS region transcription start site region 59724
Cpgi17126 6 4746791 to 4748791 2000 CpG island CpG island 17126
Tssr59725 6 4747018 to 4747030 12 - TSS region transcription start site region 59725
Tssr59726 6 4747045 to 4747056 11 - TSS region transcription start site region 59726
Tssr59727 6 4747066 to 4747132 66 - TSS region transcription start site region 59727
Tssr59728 6 4747170 to 4747184 14 - TSS region transcription start site region 59728
Tssr1771 6 4747298 to 4747354 56 + TSS region transcription start site region 1771
Peg10 6 4747306 to 4760517 13211 + protein coding gene paternally expressed 10
Tssr54763 6 4747360 to 4747372 12 + TSS region transcription start site region 54763
Tssr1772 6 4747431 to 4747441 10 + TSS region transcription start site region 1772
Tssr1773 6 4747442 to 4747452 10 + TSS region transcription start site region 1773
Tssr54764 6 4747610 to 4747613 3 + TSS region transcription start site region 54764
Tssr54765 6 4752802 to 4752812 10 + TSS region transcription start site region 54765
Tssr54766 6 4754131 to 4754145 14 + TSS region transcription start site region 54766
Tssr54767 6 4754193 to 4754201 8 + TSS region transcription start site region 54767
Tssr54768 6 4754231 to 4754242 11 + TSS region transcription start site region 54768
Tssr59729 6 4754235 to 4754257 22 - TSS region transcription start site region 59729
Tssr54769 6 4754246 to 4754275 29 + TSS region transcription start site region 54769
Tssr54770 6 4754429 to 4754440 11 + TSS region transcription start site region 54770
Tssr54771 6 4754570 to 4754581 11 + TSS region transcription start site region 54771
Cpgi17127 6 4754723 to 4755432 709 CpG island CpG island 17127
Tssr54772 6 4755119 to 4755137 18 + TSS region transcription start site region 54772
Tssr54773 6 4755356 to 4755357 1 + TSS region transcription start site region 54773
Tssr54774 6 4755368 to 4755384 16 + TSS region transcription start site region 54774
Tssr54775 6 4755397 to 4755408 11 + TSS region transcription start site region 54775
Tssr54776 6 4755442 to 4755462 20 + TSS region transcription start site region 54776
Tssr54777 6 4755566 to 4755573 7 + TSS region transcription start site region 54777
Tssr54778 6 4755579 to 4755590 11 + TSS region transcription start site region 54778
Tssr54779 6 4755598 to 4755607 9 + TSS region transcription start site region 54779
Tssr54780 6 4755723 to 4755751 28 + TSS region transcription start site region 54780
Tssr54781 6 4755792 to 4755809 17 + TSS region transcription start site region 54781
Tssr54782 6 4755947 to 4755948 1 + TSS region transcription start site region 54782
Tssr54783 6 4755983 to 4756002 19 + TSS region transcription start site region 54783
Tssr54784 6 4756051 to 4756066 15 + TSS region transcription start site region 54784
Tssr54785 6 4756386 to 4756395 9 + TSS region transcription start site region 54785