Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:33979005-34739111

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95 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm13853 6 33984989 to 33992411 7422 - lincRNA gene predicted gene 13853
Tssr60221 6 33992175 to 33992209 34 - TSS region transcription start site region 60221
Tssr60222 6 33992372 to 33992376 4 - TSS region transcription start site region 60222
Tssr60223 6 33992413 to 33992420 7 - TSS region transcription start site region 60223
Gm38786 6 34022414 to 34029724 7310 - lncRNA gene predicted gene, 38786
Cpgi17280 6 34029297 to 34029682 385 CpG island CpG island 17280
Tssr55492 6 34029421 to 34029456 35 + TSS region transcription start site region 55492
Lrguk 6 34029448 to 34134034 104586 + protein coding gene leucine-rich repeats and guanylate kinase domain containing
Tssr60224 6 34041787 to 34041793 6 - TSS region transcription start site region 60224
Gm13856 6 34151929 to 34174235 22306 + antisense lncRNA gene predicted gene 13856
Slc35b4 6 34155875 to 34177077 21202 - protein coding gene solute carrier family 35, member B4
D6Mit310 6 34162506 to 34162627 121 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 310
Tssr60225 6 34172038 to 34172043 5 - TSS region transcription start site region 60225
Cpgi17281 6 34176517 to 34177261 744 CpG island CpG island 17281
Tssr60226 6 34176918 to 34176932 14 - TSS region transcription start site region 60226
Tssr60227 6 34176941 to 34177014 73 - TSS region transcription start site region 60227
Tssr60228 6 34177021 to 34177041 20 - TSS region transcription start site region 60228
Tssr60229 6 34177048 to 34177071 23 - TSS region transcription start site region 60229
Gm13855 6 34177168 to 34179377 2209 + lincRNA gene predicted gene 13855
Tssr1809 6 34179189 to 34179200 11 + TSS region transcription start site region 1809
Tssr55493 6 34179226 to 34179246 20 + TSS region transcription start site region 55493
Tssr55494 6 34179254 to 34179285 31 + TSS region transcription start site region 55494
Tssr55495 6 34179301 to 34179309 8 + TSS region transcription start site region 55495
Gm32533 6 34197168 to 34227076 29908 + lncRNA gene predicted gene, 32533
Tssr1810 6 34289906 to 34289912 6 - TSS region transcription start site region 1810
Gm14546 6 34290265 to 34324249 33984 + antisense lncRNA gene predicted gene 14546
Akr1b3 6 34303930 to 34317489 13559 - protein coding gene aldo-keto reductase family 1, member B3 (aldose reductase)
Cpgi17282 6 34316967 to 34317736 769 CpG island CpG island 17282
Tssr60230 6 34317442 to 34317499 57 - TSS region transcription start site region 60230
Tssr60231 6 34345077 to 34345098 21 - TSS region transcription start site region 60231
Tssr55496 6 34354125 to 34354151 26 + TSS region transcription start site region 55496
Tssr55497 6 34354155 to 34354199 44 + TSS region transcription start site region 55497
Akr1b8 6 34354164 to 34368454 14290 + protein coding gene aldo-keto reductase family 1, member B8
Tssr55498 6 34358124 to 34358169 45 + TSS region transcription start site region 55498
D6Mit269 6 34359005 to 34359111 106 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 269
Gm13859 6 34373691 to 34374738 1047 - pseudogene predicted gene 13859
Gm13858 6 34379467 to 34380445 978 - pseudogene predicted gene 13858
Akr1b10 6 34384218 to 34396950 12732 + protein coding gene aldo-keto reductase family 1, member B10 (aldose reductase)
Tssr55499 6 34384230 to 34384335 105 + TSS region transcription start site region 55499
Tssr60232 6 34395949 to 34395957 8 - TSS region transcription start site region 60232
Tssr55500 6 34412117 to 34412128 11 + TSS region transcription start site region 55500
Tssr55501 6 34412190 to 34412202 12 + TSS region transcription start site region 55501
Tssr55502 6 34412353 to 34412373 20 + TSS region transcription start site region 55502
Akr1b7 6 34412362 to 34423137 10775 + protein coding gene aldo-keto reductase family 1, member B7
D6Mit92.1 6 34414326 to 34414483 157 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 92.1
D6Mit92.4 6 34414716 to 34414840 124 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 92.4
Tssr60233 6 34415415 to 34415426 11 - TSS region transcription start site region 60233
Tssr55503 6 34415416 to 34415425 9 + TSS region transcription start site region 55503
Tssr60234 6 34415453 to 34415458 5 - TSS region transcription start site region 60234
Tssr55504 6 34419393 to 34419409 16 + TSS region transcription start site region 55504
Tssr1811 6 34419414 to 34419417 3 + TSS region transcription start site region 1811
Tssr60235 6 34419431 to 34419445 14 - TSS region transcription start site region 60235
Tssr55505 6 34419461 to 34419468 7 + TSS region transcription start site region 55505
Tssr60236 6 34419472 to 34419483 11 - TSS region transcription start site region 60236
Tssr60237 6 34423020 to 34423038 18 - TSS region transcription start site region 60237
Tssr55506 6 34423028 to 34423046 18 + TSS region transcription start site region 55506
Tssr55507 6 34423050 to 34423065 15 + TSS region transcription start site region 55507
Tssr55508 6 34423075 to 34423091 16 + TSS region transcription start site region 55508
Tssr60238 6 34423114 to 34423138 24 - TSS region transcription start site region 60238
Tssr1812 6 34438607 to 34438610 3 + TSS region transcription start site region 1812
Gm13857 6 34442617 to 34445436 2819 - pseudogene predicted gene 13857
Cpgi17283 6 34476126 to 34476525 399 CpG island CpG island 17283
Bpgm 6 34476253 to 34505610 29357 + protein coding gene 2,3-bisphosphoglycerate mutase
Tssr55509 6 34476286 to 34476362 76 + TSS region transcription start site region 55509
Tssr55510 6 34486258 to 34486292 34 + TSS region transcription start site region 55510
Tssr55511 6 34486622 to 34486642 20 + TSS region transcription start site region 55511
Gm13860 6 34533553 to 34541387 7834 + lincRNA gene predicted gene 13860
Gm32942 6 34534065 to 34536907 2842 - lncRNA gene predicted gene, 32942
Tssr55512 6 34598327 to 34598334 7 + TSS region transcription start site region 55512
Cald1 6 34598496 to 34775469 176973 + protein coding gene caldesmon 1
Tssr55513 6 34598518 to 34598529 11 + TSS region transcription start site region 55513
Tssr55514 6 34598530 to 34598587 57 + TSS region transcription start site region 55514
Tssr55515 6 34598595 to 34598606 11 + TSS region transcription start site region 55515
Tssr55516 6 34598615 to 34598626 11 + TSS region transcription start site region 55516
Tssr60239 6 34599876 to 34599892 16 - TSS region transcription start site region 60239
Tssr55517 6 34606445 to 34606449 4 + TSS region transcription start site region 55517
Gm13861 6 34651354 to 34653894 2540 - lincRNA gene predicted gene 13861
Tssr55518 6 34662167 to 34662191 24 + TSS region transcription start site region 55518
Tssr55519 6 34682936 to 34682975 39 + TSS region transcription start site region 55519
Tssr55520 6 34685094 to 34685105 11 + TSS region transcription start site region 55520
Tssr55521 6 34685108 to 34685130 22 + TSS region transcription start site region 55521
Tssr55522 6 34709438 to 34709446 8 + TSS region transcription start site region 55522
Tssr55523 6 34709473 to 34709497 24 + TSS region transcription start site region 55523
Tssr55524 6 34709517 to 34709542 25 + TSS region transcription start site region 55524
Tssr55525 6 34709575 to 34709586 11 + TSS region transcription start site region 55525
Tssr55526 6 34709610 to 34709635 25 + TSS region transcription start site region 55526
Gm38787 6 34712295 to 34713160 865 - lncRNA gene predicted gene, 38787
Tssr60240 6 34713162 to 34713174 12 - TSS region transcription start site region 60240
Npn2 6 34726672 to 34726906 234 - antisense lncRNA gene neoplastic progression 2
Gm14547 6 34727221 to 34735389 8168 - antisense lncRNA gene predicted gene 14547
Fglu 6 34734663 to 34734784 121 QTL fasting glucose
Pcd4ts1 6 34734663 to 34734784 121 QTL p-glycoprotein positive CD4 T cell subset 1
Cia6b 6 34734663 to 38969603 4234940 QTL collagen induced arthritis QTL 6b
Spqq2 6 34734663 to 34734784 121 QTL sperm quality QTL 2
D6Mit268 6 34734663 to 34734784 121 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 268