Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:31559543-33173192

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Podxl 6 31519493 to 31563937 44444 - protein coding gene podocalyxin-like
Tssr60197 6 31562066 to 31562069 3 - TSS region transcription start site region 60197
Cpgi17272 6 31563034 to 31564465 1431 CpG island CpG island 17272
Tssr60198 6 31563840 to 31563854 14 - TSS region transcription start site region 60198
Tssr60199 6 31563855 to 31563880 25 - TSS region transcription start site region 60199
Tssr60200 6 31563882 to 31563883 1 - TSS region transcription start site region 60200
Tssr60201 6 31563888 to 31563910 22 - TSS region transcription start site region 60201
Tssr60202 6 31563926 to 31563935 9 - TSS region transcription start site region 60202
Tssr60203 6 31563978 to 31563989 11 - TSS region transcription start site region 60203
Gm6117 6 31574732 to 31575892 1160 + lincRNA gene predicted gene 6117
Tssr55468 6 31574981 to 31574991 10 + TSS region transcription start site region 55468
Gm31486 6 31605142 to 31635773 30631 + lncRNA gene predicted gene, 31486
Gm43154 6 31605190 to 31798053 192863 + lincRNA gene predicted gene 43154
Tssr55469 6 31619960 to 31619984 24 + TSS region transcription start site region 55469
Gm13846 6 31650979 to 31743088 92109 + lncRNA gene predicted gene 13846
Gm13848 6 31658173 to 31666131 7958 - lincRNA gene predicted gene 13848
Gm13847 6 31666401 to 31680698 14297 + lncRNA gene predicted gene 13847
Tssr55470 6 31679332 to 31679339 7 + TSS region transcription start site region 55470
Gm43293 6 31702245 to 31706990 4745 - lincRNA gene predicted gene 43293
Obrq2a 6 31717406 to 34870960 3153554 QTL obesity resistance QTL 2a
D6Mit237 6 31748076 to 31748210 134 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 237
D6Mit237.2 6 31748205 to 31748401 196 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 237.2
Gm13849 6 31786675 to 31922270 135595 + lincRNA gene predicted gene 13849
Cpgi17273 6 31938289 to 31938602 313 CpG island CpG island 17273
Tssr1808 6 31955242 to 31955255 13 + TSS region transcription start site region 1808
D6Mit81 6 32016314 to 32016508 194 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 81
Gm31894 6 32017998 to 32040930 22932 + lncRNA gene predicted gene, 31894
D6Mit51 6 32049218 to 32049334 116 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 51
Tssr55471 6 32050266 to 32050278 12 + TSS region transcription start site region 55471
Tssr55472 6 32050281 to 32050307 26 + TSS region transcription start site region 55472
1700012A03Rik 6 32050285 to 32058915 8630 + protein coding gene RIKEN cDNA 1700012A03 gene
D6Mit341 6 32101005 to 32101125 120 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 341
Tssr55473 6 32112113 to 32112130 17 + TSS region transcription start site region 55473
Gm13850 6 32112143 to 32113226 1083 + lincRNA gene predicted gene 13850
D6Mit47 6 32114315 to 32114505 190 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 47
Plxna4 6 32144543 to 32588192 443649 - protein coding gene plexin A4
Plxna4os3 6 32303829 to 32316614 12785 + antisense lncRNA gene plexin A4, opposite strand 3
Plxna4os2 6 32451170 to 32454750 3580 + antisense lncRNA gene plexin A4, opposite strand 2
D6Mit82 6 32507702 to 32507837 135 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 82
Tssr55474 6 32511118 to 32511170 52 + TSS region transcription start site region 55474
Plxna4os1 6 32511141 to 32515576 4435 + antisense lncRNA gene plexin A4, opposite strand 1
Tssr55475 6 32511179 to 32511190 11 + TSS region transcription start site region 55475
Tssr60204 6 32543823 to 32543827 4 - TSS region transcription start site region 60204
Cpgi17274 6 32564113 to 32564328 215 CpG island CpG island 17274
D6Mit141.1 6 32569159 to 32569306 147 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 141.1
Cpgi17275 6 32586481 to 32586679 198 CpG island CpG island 17275
Cpgi17276 6 32586695 to 32588885 2190 CpG island CpG island 17276
Tssr60205 6 32587346 to 32587360 14 - TSS region transcription start site region 60205
Tssr60206 6 32588195 to 32588213 18 - TSS region transcription start site region 60206
Tssr60207 6 32588215 to 32588238 23 - TSS region transcription start site region 60207
Tssr60208 6 32588247 to 32588258 11 - TSS region transcription start site region 60208
Gm46956 6 32598254 to 32635123 36869 - lncRNA gene predicted gene, 46956
Gm13852 6 32610119 to 32610360 241 + pseudogene predicted gene 13852
Gm32007 6 32636004 to 32657223 21219 - lncRNA gene predicted gene, 32007
Tssr60209 6 32656980 to 32656985 5 - TSS region transcription start site region 60209
Mdq1 6 32739715 to 32739715 0 QTL mammary ductal QTL 1
BC049739 6 32751629 to 32752288 659 - lincRNA gene cDNA sequence BC049739
Tssr60210 6 32752286 to 32752293 7 - TSS region transcription start site region 60210
Chchd3 6 32792217 to 33060278 268061 - protein coding gene coiled-coil-helix-coiled-coil-helix domain containing 3
Mrdq5 6 32850650 to 78238974 45388324 QTL modifier of retinal degeneration QTL 5
Tssr60211 6 32897022 to 32897033 11 - TSS region transcription start site region 60211
Tssr60212 6 32897039 to 32897060 21 - TSS region transcription start site region 60212
Tssr60213 6 32897063 to 32897079 16 - TSS region transcription start site region 60213
C030041B07Rik 6 32953948 to 32954946 998 unclassified gene RIKEN cDNA C030041B07 gene
Tssr60214 6 32962062 to 32962066 4 - TSS region transcription start site region 60214
Tssr55476 6 32968279 to 32968292 13 + TSS region transcription start site region 55476
Tssr60215 6 32993644 to 32993649 5 - TSS region transcription start site region 60215
Tssr60216 6 32994452 to 32994463 11 - TSS region transcription start site region 60216
Gm14540 6 33038468 to 33043222 4754 + antisense lncRNA gene predicted gene 14540
Gm42895 6 33039124 to 33042119 2995 - unclassified gene predicted gene 42895
Tssr60217 6 33055933 to 33055950 17 - TSS region transcription start site region 60217
Cpgi17277 6 33059754 to 33060365 611 CpG island CpG island 17277
Tssr60218 6 33060172 to 33060252 80 - TSS region transcription start site region 60218
Tssr60219 6 33060256 to 33060267 11 - TSS region transcription start site region 60219
Gm22321 6 33088646 to 33088749 103 - snRNA gene predicted gene, 22321
D6Mit238 6 33164316 to 33164570 254 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 238