Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:3149527-3839542

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67 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi17119 6 3182605 to 3183686 1081 CpG island CpG island 17119
Gm42642 6 3182630 to 3182984 354 - pseudogene predicted gene 42642
Tssr59672 6 3183002 to 3183021 19 - TSS region transcription start site region 59672
Gm42959 6 3190691 to 3190902 211 + unclassified gene predicted gene 42959
Gm19064 6 3196906 to 3197629 723 + pseudogene predicted gene, 19064
Tssr54691 6 3200760 to 3200769 9 + TSS region transcription start site region 54691
Tssr54692 6 3201107 to 3201148 41 + TSS region transcription start site region 54692
Tssr54693 6 3201266 to 3201304 38 + TSS region transcription start site region 54693
Tssr54694 6 3201426 to 3201427 1 + TSS region transcription start site region 54694
Tssr54695 6 3201462 to 3201521 59 + TSS region transcription start site region 54695
Gm2651 6 3207869 to 3208704 835 + pseudogene predicted gene 2651
Gm42960 6 3230792 to 3231032 240 + pseudogene predicted gene 42960
Gm42961 6 3277553 to 3277733 180 + pseudogene predicted gene 42961
Gm8579 6 3288519 to 3317019 28500 + pseudogene predicted gene 8579
Gm18222 6 3318530 to 3319916 1386 + pseudogene predicted gene, 18222
Tssr59673 6 3323381 to 3323394 13 - TSS region transcription start site region 59673
Gm43196 6 3325742 to 3327855 2113 - unclassified gene predicted gene 43196
Tssr59674 6 3332896 to 3332900 4 - TSS region transcription start site region 59674
Gm20559 6 3333194 to 3346128 12934 - unclassified non-coding RNA gene predicted gene, 20559
Gm43198 6 3334633 to 3334958 325 + unclassified gene predicted gene 43198
Gm43197 6 3336772 to 3339354 2582 - unclassified gene predicted gene 43197
Tssr59675 6 3340767 to 3340803 36 - TSS region transcription start site region 59675
Tssr54696 6 3344595 to 3344622 27 + TSS region transcription start site region 54696
Tssr59676 6 3345887 to 3345894 7 - TSS region transcription start site region 59676
Tssr59677 6 3345974 to 3345992 18 - TSS region transcription start site region 59677
Tssr59678 6 3345995 to 3346008 13 - TSS region transcription start site region 59678
Tssr59679 6 3346040 to 3346053 13 - TSS region transcription start site region 59679
Samd9l 6 3372257 to 3399571 27314 - protein coding gene sterile alpha motif domain containing 9-like
Tssr59680 6 3373571 to 3373593 22 - TSS region transcription start site region 59680
Tssr59681 6 3376883 to 3376907 24 - TSS region transcription start site region 59681
Tssr59682 6 3376932 to 3376943 11 - TSS region transcription start site region 59682
Tssr59683 6 3376990 to 3377002 12 - TSS region transcription start site region 59683
Tssr59684 6 3377013 to 3377106 93 - TSS region transcription start site region 59684
Tssr59685 6 3377107 to 3377142 35 - TSS region transcription start site region 59685
Tssr59686 6 3377174 to 3377198 24 - TSS region transcription start site region 59686
Tssr59687 6 3377273 to 3377282 9 - TSS region transcription start site region 59687
Tssr59688 6 3382000 to 3382014 14 - TSS region transcription start site region 59688
Tssr59689 6 3399301 to 3399315 14 - TSS region transcription start site region 59689
Tssr59690 6 3399451 to 3399464 13 - TSS region transcription start site region 59690
Tssr59691 6 3399545 to 3399574 29 - TSS region transcription start site region 59691
Hepacam2 6 3457096 to 3498298 41202 - protein coding gene HEPACAM family member 2
Tssr59692 6 3487371 to 3487419 48 - TSS region transcription start site region 59692
Tssr59693 6 3487479 to 3487484 5 - TSS region transcription start site region 59693
Tssr59694 6 3494486 to 3494526 40 - TSS region transcription start site region 59694
Tssr59695 6 3494527 to 3494542 15 - TSS region transcription start site region 59695
Tssr59696 6 3494549 to 3494563 14 - TSS region transcription start site region 59696
Tssr59697 6 3494587 to 3494598 11 - TSS region transcription start site region 59697
Tssr1765 6 3494605 to 3494612 7 - TSS region transcription start site region 1765
Cpgi17120 6 3498259 to 3498431 172 CpG island CpG island 17120
Tssr59698 6 3498301 to 3498312 11 - TSS region transcription start site region 59698
Vps50 6 3498393 to 3603531 105138 + protein coding gene VPS50 EARP/GARPII complex subunit
Tssr54697 6 3498399 to 3498439 40 + TSS region transcription start site region 54697
Tssr1766 6 3504241 to 3504245 4 + TSS region transcription start site region 1766
Tssr54698 6 3523934 to 3523942 8 + TSS region transcription start site region 54698
Tssr54699 6 3526668 to 3526679 11 + TSS region transcription start site region 54699
D6Mit231 6 3528851 to 3528953 102 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 231
Tssr1767 6 3570559 to 3570564 5 - TSS region transcription start site region 1767
Tssr59699 6 3570570 to 3570583 13 - TSS region transcription start site region 59699
Tssr54700 6 3574274 to 3574278 4 + TSS region transcription start site region 54700
Gm43294 6 3583814 to 3586303 2489 + unclassified gene predicted gene 43294
Calcr 6 3685720 to 3764732 79012 - protein coding gene calcitonin receptor
Mir653 6 3721301 to 3721385 84 - miRNA gene microRNA 653
Mir489 6 3721897 to 3722003 106 - miRNA gene microRNA 489
Cpgi17121 6 3763360 to 3764178 818 CpG island CpG island 17121
Tssr59700 6 3763618 to 3763624 6 - TSS region transcription start site region 59700
Gm33576 6 3763799 to 3807425 43626 + lncRNA gene predicted gene, 33576
Tssr54701 6 3763846 to 3763857 11 + TSS region transcription start site region 54701