Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:31427406-35160960

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316 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mkln1 6 31398828 to 31511894 113066 + protein coding gene muskelin 1, intracellular mediator containing kelch motifs
Tssr60191 6 31480117 to 31480139 22 - TSS region transcription start site region 60191
Tssr60192 6 31480163 to 31480180 17 - TSS region transcription start site region 60192
Podxl 6 31519493 to 31563937 44444 - protein coding gene podocalyxin-like
Tssr60193 6 31528632 to 31528639 7 - TSS region transcription start site region 60193
Tssr60194 6 31528641 to 31528666 25 - TSS region transcription start site region 60194
Tssr60195 6 31528668 to 31528687 19 - TSS region transcription start site region 60195
Tssr60196 6 31528709 to 31528731 22 - TSS region transcription start site region 60196
Tssr55467 6 31532186 to 31532200 14 + TSS region transcription start site region 55467
Tssr60197 6 31562066 to 31562069 3 - TSS region transcription start site region 60197
Cpgi17272 6 31563034 to 31564465 1431 CpG island CpG island 17272
Tssr60198 6 31563840 to 31563854 14 - TSS region transcription start site region 60198
Tssr60199 6 31563855 to 31563880 25 - TSS region transcription start site region 60199
Tssr60200 6 31563882 to 31563883 1 - TSS region transcription start site region 60200
Tssr60201 6 31563888 to 31563910 22 - TSS region transcription start site region 60201
Tssr60202 6 31563926 to 31563935 9 - TSS region transcription start site region 60202
Tssr60203 6 31563978 to 31563989 11 - TSS region transcription start site region 60203
Gm6117 6 31574732 to 31575892 1160 + lincRNA gene predicted gene 6117
Tssr55468 6 31574981 to 31574991 10 + TSS region transcription start site region 55468
Gm31486 6 31605142 to 31635773 30631 + lncRNA gene predicted gene, 31486
Gm43154 6 31605190 to 31798053 192863 + lincRNA gene predicted gene 43154
Tssr55469 6 31619960 to 31619984 24 + TSS region transcription start site region 55469
Gm13846 6 31650979 to 31743088 92109 + lncRNA gene predicted gene 13846
Gm13848 6 31658173 to 31666131 7958 - lincRNA gene predicted gene 13848
Gm13847 6 31666401 to 31680698 14297 + lncRNA gene predicted gene 13847
Tssr55470 6 31679332 to 31679339 7 + TSS region transcription start site region 55470
Gm43293 6 31702245 to 31706990 4745 - lincRNA gene predicted gene 43293
Obrq2a 6 31717406 to 34870960 3153554 QTL obesity resistance QTL 2a
D6Mit237 6 31748076 to 31748210 134 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 237
D6Mit237.2 6 31748205 to 31748401 196 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 237.2
Gm13849 6 31786675 to 31922270 135595 + lincRNA gene predicted gene 13849
Cpgi17273 6 31938289 to 31938602 313 CpG island CpG island 17273
Tssr1808 6 31955242 to 31955255 13 + TSS region transcription start site region 1808
D6Mit81 6 32016314 to 32016508 194 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 81
Gm31894 6 32017998 to 32040930 22932 + lncRNA gene predicted gene, 31894
D6Mit51 6 32049218 to 32049334 116 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 51
Tssr55471 6 32050266 to 32050278 12 + TSS region transcription start site region 55471
Tssr55472 6 32050281 to 32050307 26 + TSS region transcription start site region 55472
1700012A03Rik 6 32050285 to 32058915 8630 + protein coding gene RIKEN cDNA 1700012A03 gene
D6Mit341 6 32101005 to 32101125 120 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 341
Tssr55473 6 32112113 to 32112130 17 + TSS region transcription start site region 55473
Gm13850 6 32112143 to 32113226 1083 + lincRNA gene predicted gene 13850
D6Mit47 6 32114315 to 32114505 190 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 47
Plxna4 6 32144543 to 32588192 443649 - protein coding gene plexin A4
Plxna4os3 6 32303829 to 32316614 12785 + antisense lncRNA gene plexin A4, opposite strand 3
Plxna4os2 6 32451170 to 32454750 3580 + antisense lncRNA gene plexin A4, opposite strand 2
D6Mit82 6 32507702 to 32507837 135 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 82
Tssr55474 6 32511118 to 32511170 52 + TSS region transcription start site region 55474
Plxna4os1 6 32511141 to 32515576 4435 + antisense lncRNA gene plexin A4, opposite strand 1
Tssr55475 6 32511179 to 32511190 11 + TSS region transcription start site region 55475
Tssr60204 6 32543823 to 32543827 4 - TSS region transcription start site region 60204
Cpgi17274 6 32564113 to 32564328 215 CpG island CpG island 17274
D6Mit141.1 6 32569159 to 32569306 147 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 141.1
Cpgi17275 6 32586481 to 32586679 198 CpG island CpG island 17275
Cpgi17276 6 32586695 to 32588885 2190 CpG island CpG island 17276
Tssr60205 6 32587346 to 32587360 14 - TSS region transcription start site region 60205
Tssr60206 6 32588195 to 32588213 18 - TSS region transcription start site region 60206
Tssr60207 6 32588215 to 32588238 23 - TSS region transcription start site region 60207
Tssr60208 6 32588247 to 32588258 11 - TSS region transcription start site region 60208
Gm46956 6 32598254 to 32635123 36869 - lncRNA gene predicted gene, 46956
Gm13852 6 32610119 to 32610360 241 + pseudogene predicted gene 13852
Gm32007 6 32636004 to 32657223 21219 - lncRNA gene predicted gene, 32007
Tssr60209 6 32656980 to 32656985 5 - TSS region transcription start site region 60209
Mdq1 6 32739715 to 32739715 0 QTL mammary ductal QTL 1
BC049739 6 32751629 to 32752288 659 - lincRNA gene cDNA sequence BC049739
Tssr60210 6 32752286 to 32752293 7 - TSS region transcription start site region 60210
Chchd3 6 32792217 to 33060278 268061 - protein coding gene coiled-coil-helix-coiled-coil-helix domain containing 3
Mrdq5 6 32850650 to 78238974 45388324 QTL modifier of retinal degeneration QTL 5
Tssr60211 6 32897022 to 32897033 11 - TSS region transcription start site region 60211
Tssr60212 6 32897039 to 32897060 21 - TSS region transcription start site region 60212
Tssr60213 6 32897063 to 32897079 16 - TSS region transcription start site region 60213
C030041B07Rik 6 32953948 to 32954946 998 unclassified gene RIKEN cDNA C030041B07 gene
Tssr60214 6 32962062 to 32962066 4 - TSS region transcription start site region 60214
Tssr55476 6 32968279 to 32968292 13 + TSS region transcription start site region 55476
Tssr60215 6 32993644 to 32993649 5 - TSS region transcription start site region 60215
Tssr60216 6 32994452 to 32994463 11 - TSS region transcription start site region 60216
Gm14540 6 33038468 to 33043222 4754 + antisense lncRNA gene predicted gene 14540
Gm42895 6 33039124 to 33042119 2995 - unclassified gene predicted gene 42895
Tssr60217 6 33055933 to 33055950 17 - TSS region transcription start site region 60217
Cpgi17277 6 33059754 to 33060365 611 CpG island CpG island 17277
Tssr60218 6 33060172 to 33060252 80 - TSS region transcription start site region 60218
Tssr60219 6 33060256 to 33060267 11 - TSS region transcription start site region 60219
Gm22321 6 33088646 to 33088749 103 - snRNA gene predicted gene, 22321
D6Mit238 6 33164316 to 33164570 254 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 238
Gm1401 6 33247328 to 33248099 771 - pseudogene predicted gene 1401
Tssr60220 6 33248875 to 33248894 19 - TSS region transcription start site region 60220
Exoc4 6 33249090 to 33972943 723853 + protein coding gene exocyst complex component 4
Cpgi17278 6 33249100 to 33249324 224 CpG island CpG island 17278
Tssr55477 6 33249112 to 33249152 40 + TSS region transcription start site region 55477
Cpgi17279 6 33270696 to 33271106 410 CpG island CpG island 17279
Tssr55478 6 33289661 to 33289665 4 + TSS region transcription start site region 55478
Tssr55479 6 33368639 to 33368654 15 + TSS region transcription start site region 55479
Tssr55480 6 33374629 to 33374645 16 + TSS region transcription start site region 55480
Tssr55481 6 33375220 to 33375223 3 + TSS region transcription start site region 55481
Tssr55482 6 33375242 to 33375257 15 + TSS region transcription start site region 55482
Gm13854 6 33375910 to 33377420 1510 - pseudogene predicted gene 13854
Gm43168 6 33433008 to 33434619 1611 + unclassified gene predicted gene 43168
Tssr55483 6 33457001 to 33457018 17 + TSS region transcription start site region 55483
Gm38785 6 33464124 to 33474839 10715 + lncRNA gene predicted gene, 38785
Tssr55484 6 33476963 to 33476981 18 + TSS region transcription start site region 55484
Tssr55485 6 33503286 to 33503287 1 + TSS region transcription start site region 55485
D6Mit206 6 33518521 to 33518667 146 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 206
Tssr55486 6 33632533 to 33632544 11 + TSS region transcription start site region 55486
Tssr55487 6 33650081 to 33650093 12 + TSS region transcription start site region 55487
Tssr55488 6 33650119 to 33650142 23 + TSS region transcription start site region 55488
Gm43164 6 33690027 to 33692154 2127 - unclassified gene predicted gene 43164
D6Mit270 6 33841135 to 33841306 171 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 270
D6Dcr5 6 33841205 to 33841305 100 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 5
D6Mit309 6 33841211 to 33841305 94 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 309
5430439C14Rik 6 33843109 to 33844949 1840 unclassified gene RIKEN cDNA 5430439C14 gene
Tssr55489 6 33941299 to 33941304 5 + TSS region transcription start site region 55489
Tssr55490 6 33973261 to 33973282 21 + TSS region transcription start site region 55490
Tssr55491 6 33973286 to 33973320 34 + TSS region transcription start site region 55491
Gm13853 6 33984989 to 33992411 7422 - lincRNA gene predicted gene 13853
Tssr60221 6 33992175 to 33992209 34 - TSS region transcription start site region 60221
Tssr60222 6 33992372 to 33992376 4 - TSS region transcription start site region 60222
Tssr60223 6 33992413 to 33992420 7 - TSS region transcription start site region 60223
Gm38786 6 34022414 to 34029724 7310 - lncRNA gene predicted gene, 38786
Cpgi17280 6 34029297 to 34029682 385 CpG island CpG island 17280
Tssr55492 6 34029421 to 34029456 35 + TSS region transcription start site region 55492
Lrguk 6 34029448 to 34134034 104586 + protein coding gene leucine-rich repeats and guanylate kinase domain containing
Tssr60224 6 34041787 to 34041793 6 - TSS region transcription start site region 60224
Gm13856 6 34151929 to 34174235 22306 + antisense lncRNA gene predicted gene 13856
Slc35b4 6 34155875 to 34177077 21202 - protein coding gene solute carrier family 35, member B4
D6Mit310 6 34162506 to 34162627 121 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 310
Tssr60225 6 34172038 to 34172043 5 - TSS region transcription start site region 60225
Cpgi17281 6 34176517 to 34177261 744 CpG island CpG island 17281
Tssr60226 6 34176918 to 34176932 14 - TSS region transcription start site region 60226
Tssr60227 6 34176941 to 34177014 73 - TSS region transcription start site region 60227
Tssr60228 6 34177021 to 34177041 20 - TSS region transcription start site region 60228
Tssr60229 6 34177048 to 34177071 23 - TSS region transcription start site region 60229
Gm13855 6 34177168 to 34179377 2209 + lincRNA gene predicted gene 13855
Tssr1809 6 34179189 to 34179200 11 + TSS region transcription start site region 1809
Tssr55493 6 34179226 to 34179246 20 + TSS region transcription start site region 55493
Tssr55494 6 34179254 to 34179285 31 + TSS region transcription start site region 55494
Tssr55495 6 34179301 to 34179309 8 + TSS region transcription start site region 55495
Gm32533 6 34197168 to 34227076 29908 + lncRNA gene predicted gene, 32533
Tssr1810 6 34289906 to 34289912 6 - TSS region transcription start site region 1810
Gm14546 6 34290265 to 34324249 33984 + antisense lncRNA gene predicted gene 14546
Akr1b3 6 34303930 to 34317489 13559 - protein coding gene aldo-keto reductase family 1, member B3 (aldose reductase)
Cpgi17282 6 34316967 to 34317736 769 CpG island CpG island 17282
Tssr60230 6 34317442 to 34317499 57 - TSS region transcription start site region 60230
Tssr60231 6 34345077 to 34345098 21 - TSS region transcription start site region 60231
Tssr55496 6 34354125 to 34354151 26 + TSS region transcription start site region 55496
Tssr55497 6 34354155 to 34354199 44 + TSS region transcription start site region 55497
Akr1b8 6 34354164 to 34368454 14290 + protein coding gene aldo-keto reductase family 1, member B8
Tssr55498 6 34358124 to 34358169 45 + TSS region transcription start site region 55498
D6Mit269 6 34359005 to 34359111 106 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 269
Gm13859 6 34373691 to 34374738 1047 - pseudogene predicted gene 13859
Gm13858 6 34379467 to 34380445 978 - pseudogene predicted gene 13858
Akr1b10 6 34384218 to 34396950 12732 + protein coding gene aldo-keto reductase family 1, member B10 (aldose reductase)
Tssr55499 6 34384230 to 34384335 105 + TSS region transcription start site region 55499
Tssr60232 6 34395949 to 34395957 8 - TSS region transcription start site region 60232
Tssr55500 6 34412117 to 34412128 11 + TSS region transcription start site region 55500
Tssr55501 6 34412190 to 34412202 12 + TSS region transcription start site region 55501
Tssr55502 6 34412353 to 34412373 20 + TSS region transcription start site region 55502
Akr1b7 6 34412362 to 34423137 10775 + protein coding gene aldo-keto reductase family 1, member B7
D6Mit92.1 6 34414326 to 34414483 157 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 92.1
D6Mit92.4 6 34414716 to 34414840 124 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 92.4
Tssr60233 6 34415415 to 34415426 11 - TSS region transcription start site region 60233
Tssr55503 6 34415416 to 34415425 9 + TSS region transcription start site region 55503
Tssr60234 6 34415453 to 34415458 5 - TSS region transcription start site region 60234
Tssr55504 6 34419393 to 34419409 16 + TSS region transcription start site region 55504
Tssr1811 6 34419414 to 34419417 3 + TSS region transcription start site region 1811
Tssr60235 6 34419431 to 34419445 14 - TSS region transcription start site region 60235
Tssr55505 6 34419461 to 34419468 7 + TSS region transcription start site region 55505
Tssr60236 6 34419472 to 34419483 11 - TSS region transcription start site region 60236
Tssr60237 6 34423020 to 34423038 18 - TSS region transcription start site region 60237
Tssr55506 6 34423028 to 34423046 18 + TSS region transcription start site region 55506
Tssr55507 6 34423050 to 34423065 15 + TSS region transcription start site region 55507
Tssr55508 6 34423075 to 34423091 16 + TSS region transcription start site region 55508
Tssr60238 6 34423114 to 34423138 24 - TSS region transcription start site region 60238
Tssr1812 6 34438607 to 34438610 3 + TSS region transcription start site region 1812
Gm13857 6 34442617 to 34445436 2819 - pseudogene predicted gene 13857
Cpgi17283 6 34476126 to 34476525 399 CpG island CpG island 17283
Bpgm 6 34476253 to 34505610 29357 + protein coding gene 2,3-bisphosphoglycerate mutase
Tssr55509 6 34476286 to 34476362 76 + TSS region transcription start site region 55509
Tssr55510 6 34486258 to 34486292 34 + TSS region transcription start site region 55510
Tssr55511 6 34486622 to 34486642 20 + TSS region transcription start site region 55511
Gm13860 6 34533553 to 34541387 7834 + lincRNA gene predicted gene 13860
Gm32942 6 34534065 to 34536907 2842 - lncRNA gene predicted gene, 32942
Tssr55512 6 34598327 to 34598334 7 + TSS region transcription start site region 55512
Cald1 6 34598496 to 34775469 176973 + protein coding gene caldesmon 1
Tssr55513 6 34598518 to 34598529 11 + TSS region transcription start site region 55513
Tssr55514 6 34598530 to 34598587 57 + TSS region transcription start site region 55514
Tssr55515 6 34598595 to 34598606 11 + TSS region transcription start site region 55515
Tssr55516 6 34598615 to 34598626 11 + TSS region transcription start site region 55516
Tssr60239 6 34599876 to 34599892 16 - TSS region transcription start site region 60239
Tssr55517 6 34606445 to 34606449 4 + TSS region transcription start site region 55517
Gm13861 6 34651354 to 34653894 2540 - lincRNA gene predicted gene 13861
Tssr55518 6 34662167 to 34662191 24 + TSS region transcription start site region 55518
Tssr55519 6 34682936 to 34682975 39 + TSS region transcription start site region 55519
Tssr55520 6 34685094 to 34685105 11 + TSS region transcription start site region 55520
Tssr55521 6 34685108 to 34685130 22 + TSS region transcription start site region 55521
Tssr55522 6 34709438 to 34709446 8 + TSS region transcription start site region 55522
Tssr55523 6 34709473 to 34709497 24 + TSS region transcription start site region 55523
Tssr55524 6 34709517 to 34709542 25 + TSS region transcription start site region 55524
Tssr55525 6 34709575 to 34709586 11 + TSS region transcription start site region 55525
Tssr55526 6 34709610 to 34709635 25 + TSS region transcription start site region 55526
Gm38787 6 34712295 to 34713160 865 - lncRNA gene predicted gene, 38787