Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:31139218-32959334

Filter by:
129 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lncpint 6 31093563 to 31218474 124911 - lincRNA gene long non-protein coding RNA, Trp53 induced transcript
Gm13835 6 31141979 to 31142663 684 - pseudogene predicted gene 13835
Gm37728 6 31145128 to 31147419 2291 - unclassified gene predicted gene, 37728
Tssr60166 6 31156775 to 31156778 3 - TSS region transcription start site region 60166
Tssr55454 6 31159493 to 31159501 8 + TSS region transcription start site region 55454
Tssr1807 6 31165382 to 31165390 8 + TSS region transcription start site region 1807
Tssr60167 6 31184719 to 31184732 13 - TSS region transcription start site region 60167
Tssr60168 6 31190674 to 31190676 2 - TSS region transcription start site region 60168
Tssr60169 6 31196602 to 31196623 21 - TSS region transcription start site region 60169
Tssr60170 6 31202323 to 31202336 13 - TSS region transcription start site region 60170
Tssr60171 6 31205946 to 31205951 5 - TSS region transcription start site region 60171
Tssr60172 6 31207149 to 31207152 3 - TSS region transcription start site region 60172
Tssr60173 6 31211055 to 31211063 8 - TSS region transcription start site region 60173
Tssr60174 6 31211143 to 31211171 28 - TSS region transcription start site region 60174
Tssr60175 6 31211207 to 31211222 15 - TSS region transcription start site region 60175
Tssr60176 6 31213792 to 31213797 5 - TSS region transcription start site region 60176
Cpgi17266 6 31215979 to 31217413 1434 CpG island CpG island 17266
Tssr55455 6 31216687 to 31216700 13 + TSS region transcription start site region 55455
Tssr55456 6 31216902 to 31216936 34 + TSS region transcription start site region 55456
Tssr55457 6 31216952 to 31216963 11 + TSS region transcription start site region 55457
Tssr60177 6 31217506 to 31217524 18 - TSS region transcription start site region 60177
Tssr60178 6 31217664 to 31217668 4 - TSS region transcription start site region 60178
Cpgi17267 6 31217696 to 31218791 1095 CpG island CpG island 17267
Tssr60179 6 31218373 to 31218387 14 - TSS region transcription start site region 60179
Tssr60180 6 31218421 to 31218440 19 - TSS region transcription start site region 60180
Tssr60181 6 31218444 to 31218465 21 - TSS region transcription start site region 60181
Tssr60182 6 31218470 to 31218485 15 - TSS region transcription start site region 60182
Tssr60183 6 31218694 to 31218714 20 - TSS region transcription start site region 60183
Tssr60184 6 31219034 to 31219045 11 - TSS region transcription start site region 60184
Tssr60185 6 31220237 to 31220248 11 - TSS region transcription start site region 60185
Tssr60186 6 31220287 to 31220297 10 - TSS region transcription start site region 60186
Cpgi17268 6 31220298 to 31220733 435 CpG island CpG island 17268
Tssr60187 6 31220299 to 31220368 69 - TSS region transcription start site region 60187
Tssr55458 6 31220343 to 31220364 21 + TSS region transcription start site region 55458
2210408F21Rik 6 31220351 to 31337395 117044 + lncRNA gene RIKEN cDNA 2210408F21 gene
Tssr55459 6 31220400 to 31220429 29 + TSS region transcription start site region 55459
Tssr55460 6 31220432 to 31220464 32 + TSS region transcription start site region 55460
Tssr55461 6 31221800 to 31221846 46 + TSS region transcription start site region 55461
Tssr55462 6 31237263 to 31237283 20 + TSS region transcription start site region 55462
Gm38782 6 31240578 to 31243962 3384 - lncRNA gene predicted gene, 38782
Cpgi17269 6 31266674 to 31266941 267 CpG island CpG island 17269
Cpgi17270 6 31285007 to 31285442 435 CpG island CpG island 17270
Gm43800 6 31288963 to 31291693 2730 + unclassified gene predicted gene 43800
Tssr55463 6 31288988 to 31289000 12 + TSS region transcription start site region 55463
D6Mit172 6 31309671 to 31309862 191 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 172
D6Mit172.2 6 31309829 to 31309941 112 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 172.2
Tssr55464 6 31314111 to 31314139 28 + TSS region transcription start site region 55464
Tssr60188 6 31318117 to 31318151 34 - TSS region transcription start site region 60188
Tssr55465 6 31327263 to 31327266 3 + TSS region transcription start site region 55465
9530034D02Rik 6 31330626 to 31331730 1104 unclassified gene RIKEN cDNA 9530034D02 gene
Gm14532 6 31356743 to 31372369 15626 + lincRNA gene predicted gene 14532
Mkln1os 6 31366885 to 31398773 31888 - lincRNA gene muskelin 1, intracellular mediator containing kelch motifs, opposite strand
Gm13844 6 31372895 to 31383877 10982 + lincRNA gene predicted gene 13844
Cpgi17271 6 31398651 to 31399855 1204 CpG island CpG island 17271
Tssr60189 6 31398734 to 31398766 32 - TSS region transcription start site region 60189
Tssr55466 6 31398817 to 31398856 39 + TSS region transcription start site region 55466
Mkln1 6 31398828 to 31511894 113066 + protein coding gene muskelin 1, intracellular mediator containing kelch motifs
Tssr60190 6 31399400 to 31399420 20 - TSS region transcription start site region 60190
Tssr60191 6 31480117 to 31480139 22 - TSS region transcription start site region 60191
Tssr60192 6 31480163 to 31480180 17 - TSS region transcription start site region 60192
Podxl 6 31519493 to 31563937 44444 - protein coding gene podocalyxin-like
Tssr60193 6 31528632 to 31528639 7 - TSS region transcription start site region 60193
Tssr60194 6 31528641 to 31528666 25 - TSS region transcription start site region 60194
Tssr60195 6 31528668 to 31528687 19 - TSS region transcription start site region 60195
Tssr60196 6 31528709 to 31528731 22 - TSS region transcription start site region 60196
Tssr55467 6 31532186 to 31532200 14 + TSS region transcription start site region 55467
Tssr60197 6 31562066 to 31562069 3 - TSS region transcription start site region 60197
Cpgi17272 6 31563034 to 31564465 1431 CpG island CpG island 17272
Tssr60198 6 31563840 to 31563854 14 - TSS region transcription start site region 60198
Tssr60199 6 31563855 to 31563880 25 - TSS region transcription start site region 60199
Tssr60200 6 31563882 to 31563883 1 - TSS region transcription start site region 60200
Tssr60201 6 31563888 to 31563910 22 - TSS region transcription start site region 60201
Tssr60202 6 31563926 to 31563935 9 - TSS region transcription start site region 60202
Tssr60203 6 31563978 to 31563989 11 - TSS region transcription start site region 60203
Gm6117 6 31574732 to 31575892 1160 + lincRNA gene predicted gene 6117
Tssr55468 6 31574981 to 31574991 10 + TSS region transcription start site region 55468
Gm31486 6 31605142 to 31635773 30631 + lncRNA gene predicted gene, 31486
Gm43154 6 31605190 to 31798053 192863 + lincRNA gene predicted gene 43154
Tssr55469 6 31619960 to 31619984 24 + TSS region transcription start site region 55469
Gm13846 6 31650979 to 31743088 92109 + lncRNA gene predicted gene 13846
Gm13848 6 31658173 to 31666131 7958 - lincRNA gene predicted gene 13848
Gm13847 6 31666401 to 31680698 14297 + lncRNA gene predicted gene 13847
Tssr55470 6 31679332 to 31679339 7 + TSS region transcription start site region 55470
Gm43293 6 31702245 to 31706990 4745 - lincRNA gene predicted gene 43293
Obrq2a 6 31717406 to 34870960 3153554 QTL obesity resistance QTL 2a
D6Mit237 6 31748076 to 31748210 134 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 237
D6Mit237.2 6 31748205 to 31748401 196 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 237.2
Gm13849 6 31786675 to 31922270 135595 + lincRNA gene predicted gene 13849
Cpgi17273 6 31938289 to 31938602 313 CpG island CpG island 17273
Tssr1808 6 31955242 to 31955255 13 + TSS region transcription start site region 1808
D6Mit81 6 32016314 to 32016508 194 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 81
Gm31894 6 32017998 to 32040930 22932 + lncRNA gene predicted gene, 31894
D6Mit51 6 32049218 to 32049334 116 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 51
Tssr55471 6 32050266 to 32050278 12 + TSS region transcription start site region 55471
Tssr55472 6 32050281 to 32050307 26 + TSS region transcription start site region 55472
1700012A03Rik 6 32050285 to 32058915 8630 + protein coding gene RIKEN cDNA 1700012A03 gene
D6Mit341 6 32101005 to 32101125 120 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 341
Tssr55473 6 32112113 to 32112130 17 + TSS region transcription start site region 55473
Gm13850 6 32112143 to 32113226 1083 + lincRNA gene predicted gene 13850
D6Mit47 6 32114315 to 32114505 190 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 47
Plxna4 6 32144543 to 32588192 443649 - protein coding gene plexin A4
Plxna4os3 6 32303829 to 32316614 12785 + antisense lncRNA gene plexin A4, opposite strand 3
Plxna4os2 6 32451170 to 32454750 3580 + antisense lncRNA gene plexin A4, opposite strand 2
D6Mit82 6 32507702 to 32507837 135 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 82
Tssr55474 6 32511118 to 32511170 52 + TSS region transcription start site region 55474
Plxna4os1 6 32511141 to 32515576 4435 + antisense lncRNA gene plexin A4, opposite strand 1
Tssr55475 6 32511179 to 32511190 11 + TSS region transcription start site region 55475
Tssr60204 6 32543823 to 32543827 4 - TSS region transcription start site region 60204
Cpgi17274 6 32564113 to 32564328 215 CpG island CpG island 17274
D6Mit141.1 6 32569159 to 32569306 147 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 141.1
Cpgi17275 6 32586481 to 32586679 198 CpG island CpG island 17275
Cpgi17276 6 32586695 to 32588885 2190 CpG island CpG island 17276
Tssr60205 6 32587346 to 32587360 14 - TSS region transcription start site region 60205
Tssr60206 6 32588195 to 32588213 18 - TSS region transcription start site region 60206
Tssr60207 6 32588215 to 32588238 23 - TSS region transcription start site region 60207
Tssr60208 6 32588247 to 32588258 11 - TSS region transcription start site region 60208
Gm46956 6 32598254 to 32635123 36869 - lncRNA gene predicted gene, 46956
Gm13852 6 32610119 to 32610360 241 + pseudogene predicted gene 13852
Gm32007 6 32636004 to 32657223 21219 - lncRNA gene predicted gene, 32007
Tssr60209 6 32656980 to 32656985 5 - TSS region transcription start site region 60209
Mdq1 6 32739715 to 32739715 0 QTL mammary ductal QTL 1
BC049739 6 32751629 to 32752288 659 - lincRNA gene cDNA sequence BC049739
Tssr60210 6 32752286 to 32752293 7 - TSS region transcription start site region 60210
Chchd3 6 32792217 to 33060278 268061 - protein coding gene coiled-coil-helix-coiled-coil-helix domain containing 3
Mrdq5 6 32850650 to 78238974 45388324 QTL modifier of retinal degeneration QTL 5
Tssr60211 6 32897022 to 32897033 11 - TSS region transcription start site region 60211
Tssr60212 6 32897039 to 32897060 21 - TSS region transcription start site region 60212
Tssr60213 6 32897063 to 32897079 16 - TSS region transcription start site region 60213
C030041B07Rik 6 32953948 to 32954946 998 unclassified gene RIKEN cDNA C030041B07 gene