Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:30905578-31578962

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118 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tsga13 6 30896981 to 30915573 18592 - protein coding gene testis specific gene A13
4930412F09Rik 6 30903562 to 30912860 9298 + lincRNA gene RIKEN cDNA 4930412F09 gene
Tssr60144 6 30915552 to 30915590 38 - TSS region transcription start site region 60144
Cpgi17263 6 30921329 to 30921644 315 CpG island CpG island 17263
Klf14 6 30956021 to 30958990 2969 - protein coding gene Kruppel-like factor 14
Cpgi17264 6 30957636 to 30959370 1734 CpG island CpG island 17264
Tssr60145 6 30958793 to 30958815 22 - TSS region transcription start site region 60145
Gm40359 6 31010065 to 31015564 5499 - lncRNA gene predicted gene, 40359
Tssr55447 6 31023557 to 31023559 2 + TSS region transcription start site region 55447
Cpgi17265 6 31037801 to 31038163 362 CpG island CpG island 17265
Tssr60146 6 31052518 to 31052522 4 - TSS region transcription start site region 60146
Mir29a 6 31062660 to 31062747 87 - miRNA gene microRNA 29a
Mirc33 6 31062660 to 31063093 433 complex/cluster/region microRNA cluster 33, including Mir29a through Mir29b-1
Mir29b-1 6 31063023 to 31063093 70 - miRNA gene microRNA 29b-1
Gm27019 6 31063092 to 31063495 403 - lincRNA gene predicted gene, 27019
Tssr60147 6 31069877 to 31069880 3 - TSS region transcription start site region 60147
Tssr60148 6 31087625 to 31087645 20 - TSS region transcription start site region 60148
Tssr60149 6 31088213 to 31088222 9 - TSS region transcription start site region 60149
Tssr60150 6 31088349 to 31088357 8 - TSS region transcription start site region 60150
Tssr60151 6 31088438 to 31088445 7 - TSS region transcription start site region 60151
Tssr60152 6 31088464 to 31088481 17 - TSS region transcription start site region 60152
Tssr60153 6 31088542 to 31088552 10 - TSS region transcription start site region 60153
Lncpint 6 31093563 to 31218474 124911 - lincRNA gene long non-protein coding RNA, Trp53 induced transcript
Gm13833 6 31102846 to 31104646 1800 + lincRNA gene predicted gene 13833
5330406M23Rik 6 31108827 to 31110920 2093 - unclassified gene RIKEN cDNA 5330406M23 gene
Tssr60154 6 31113473 to 31113482 9 - TSS region transcription start site region 60154
Tssr55448 6 31113770 to 31113780 10 + TSS region transcription start site region 55448
Tssr60155 6 31114802 to 31114820 18 - TSS region transcription start site region 60155
Tssr60156 6 31115016 to 31115051 35 - TSS region transcription start site region 60156
Tssr60157 6 31115087 to 31115104 17 - TSS region transcription start site region 60157
Tssr55449 6 31123102 to 31123140 38 + TSS region transcription start site region 55449
Tssr55450 6 31123236 to 31123239 3 + TSS region transcription start site region 55450
Tssr55451 6 31123856 to 31123867 11 + TSS region transcription start site region 55451
Tssr55452 6 31124197 to 31124213 16 + TSS region transcription start site region 55452
Tssr60158 6 31126337 to 31126341 4 - TSS region transcription start site region 60158
Tssr60159 6 31126494 to 31126503 9 - TSS region transcription start site region 60159
Tssr60160 6 31126512 to 31126537 25 - TSS region transcription start site region 60160
Tssr60161 6 31126544 to 31126561 17 - TSS region transcription start site region 60161
Tssr60162 6 31126703 to 31126730 27 - TSS region transcription start site region 60162
Tssr55453 6 31126737 to 31126742 5 + TSS region transcription start site region 55453
Tssr60163 6 31131696 to 31131711 15 - TSS region transcription start site region 60163
Tssr60164 6 31131717 to 31131726 9 - TSS region transcription start site region 60164
Tssr60165 6 31131824 to 31131846 22 - TSS region transcription start site region 60165
Gm13835 6 31141979 to 31142663 684 - pseudogene predicted gene 13835
Gm37728 6 31145128 to 31147419 2291 - unclassified gene predicted gene, 37728
Tssr60166 6 31156775 to 31156778 3 - TSS region transcription start site region 60166
Tssr55454 6 31159493 to 31159501 8 + TSS region transcription start site region 55454
Tssr1807 6 31165382 to 31165390 8 + TSS region transcription start site region 1807
Tssr60167 6 31184719 to 31184732 13 - TSS region transcription start site region 60167
Tssr60168 6 31190674 to 31190676 2 - TSS region transcription start site region 60168
Tssr60169 6 31196602 to 31196623 21 - TSS region transcription start site region 60169
Tssr60170 6 31202323 to 31202336 13 - TSS region transcription start site region 60170
Tssr60171 6 31205946 to 31205951 5 - TSS region transcription start site region 60171
Tssr60172 6 31207149 to 31207152 3 - TSS region transcription start site region 60172
Tssr60173 6 31211055 to 31211063 8 - TSS region transcription start site region 60173
Tssr60174 6 31211143 to 31211171 28 - TSS region transcription start site region 60174
Tssr60175 6 31211207 to 31211222 15 - TSS region transcription start site region 60175
Tssr60176 6 31213792 to 31213797 5 - TSS region transcription start site region 60176
Cpgi17266 6 31215979 to 31217413 1434 CpG island CpG island 17266
Tssr55455 6 31216687 to 31216700 13 + TSS region transcription start site region 55455
Tssr55456 6 31216902 to 31216936 34 + TSS region transcription start site region 55456
Tssr55457 6 31216952 to 31216963 11 + TSS region transcription start site region 55457
Tssr60177 6 31217506 to 31217524 18 - TSS region transcription start site region 60177
Tssr60178 6 31217664 to 31217668 4 - TSS region transcription start site region 60178
Cpgi17267 6 31217696 to 31218791 1095 CpG island CpG island 17267
Tssr60179 6 31218373 to 31218387 14 - TSS region transcription start site region 60179
Tssr60180 6 31218421 to 31218440 19 - TSS region transcription start site region 60180
Tssr60181 6 31218444 to 31218465 21 - TSS region transcription start site region 60181
Tssr60182 6 31218470 to 31218485 15 - TSS region transcription start site region 60182
Tssr60183 6 31218694 to 31218714 20 - TSS region transcription start site region 60183
Tssr60184 6 31219034 to 31219045 11 - TSS region transcription start site region 60184
Tssr60185 6 31220237 to 31220248 11 - TSS region transcription start site region 60185
Tssr60186 6 31220287 to 31220297 10 - TSS region transcription start site region 60186
Cpgi17268 6 31220298 to 31220733 435 CpG island CpG island 17268
Tssr60187 6 31220299 to 31220368 69 - TSS region transcription start site region 60187
Tssr55458 6 31220343 to 31220364 21 + TSS region transcription start site region 55458
2210408F21Rik 6 31220351 to 31337395 117044 + lncRNA gene RIKEN cDNA 2210408F21 gene
Tssr55459 6 31220400 to 31220429 29 + TSS region transcription start site region 55459
Tssr55460 6 31220432 to 31220464 32 + TSS region transcription start site region 55460
Tssr55461 6 31221800 to 31221846 46 + TSS region transcription start site region 55461
Tssr55462 6 31237263 to 31237283 20 + TSS region transcription start site region 55462
Gm38782 6 31240578 to 31243962 3384 - lncRNA gene predicted gene, 38782
Cpgi17269 6 31266674 to 31266941 267 CpG island CpG island 17269
Cpgi17270 6 31285007 to 31285442 435 CpG island CpG island 17270
Gm43800 6 31288963 to 31291693 2730 + unclassified gene predicted gene 43800
Tssr55463 6 31288988 to 31289000 12 + TSS region transcription start site region 55463
D6Mit172 6 31309671 to 31309862 191 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 172
D6Mit172.2 6 31309829 to 31309941 112 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 172.2
Tssr55464 6 31314111 to 31314139 28 + TSS region transcription start site region 55464
Tssr60188 6 31318117 to 31318151 34 - TSS region transcription start site region 60188
Tssr55465 6 31327263 to 31327266 3 + TSS region transcription start site region 55465
9530034D02Rik 6 31330626 to 31331730 1104 unclassified gene RIKEN cDNA 9530034D02 gene
Gm14532 6 31356743 to 31372369 15626 + lincRNA gene predicted gene 14532
Mkln1os 6 31366885 to 31398773 31888 - lincRNA gene muskelin 1, intracellular mediator containing kelch motifs, opposite strand
Gm13844 6 31372895 to 31383877 10982 + lincRNA gene predicted gene 13844
Cpgi17271 6 31398651 to 31399855 1204 CpG island CpG island 17271
Tssr60189 6 31398734 to 31398766 32 - TSS region transcription start site region 60189
Tssr55466 6 31398817 to 31398856 39 + TSS region transcription start site region 55466
Mkln1 6 31398828 to 31511894 113066 + protein coding gene muskelin 1, intracellular mediator containing kelch motifs
Tssr60190 6 31399400 to 31399420 20 - TSS region transcription start site region 60190
Tssr60191 6 31480117 to 31480139 22 - TSS region transcription start site region 60191
Tssr60192 6 31480163 to 31480180 17 - TSS region transcription start site region 60192
Podxl 6 31519493 to 31563937 44444 - protein coding gene podocalyxin-like
Tssr60193 6 31528632 to 31528639 7 - TSS region transcription start site region 60193
Tssr60194 6 31528641 to 31528666 25 - TSS region transcription start site region 60194
Tssr60195 6 31528668 to 31528687 19 - TSS region transcription start site region 60195
Tssr60196 6 31528709 to 31528731 22 - TSS region transcription start site region 60196
Tssr55467 6 31532186 to 31532200 14 + TSS region transcription start site region 55467
Tssr60197 6 31562066 to 31562069 3 - TSS region transcription start site region 60197
Cpgi17272 6 31563034 to 31564465 1431 CpG island CpG island 17272
Tssr60198 6 31563840 to 31563854 14 - TSS region transcription start site region 60198
Tssr60199 6 31563855 to 31563880 25 - TSS region transcription start site region 60199
Tssr60200 6 31563882 to 31563883 1 - TSS region transcription start site region 60200
Tssr60201 6 31563888 to 31563910 22 - TSS region transcription start site region 60201
Tssr60202 6 31563926 to 31563935 9 - TSS region transcription start site region 60202
Tssr60203 6 31563978 to 31563989 11 - TSS region transcription start site region 60203
Gm6117 6 31574732 to 31575892 1160 + lincRNA gene predicted gene 6117
Tssr55468 6 31574981 to 31574991 10 + TSS region transcription start site region 55468