Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:30810065-31215564

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Copg2 6 30747554 to 30896794 149240 - protein coding gene coatomer protein complex, subunit gamma 2
Gm38781 6 30885666 to 30894500 8834 + lncRNA gene predicted gene, 38781
Cpgi17262 6 30896035 to 30897084 1049 CpG island CpG island 17262
Tssr60143 6 30896735 to 30896785 50 - TSS region transcription start site region 60143
Tsga13 6 30896981 to 30915573 18592 - protein coding gene testis specific gene A13
Tssr55446 6 30903556 to 30903565 9 + TSS region transcription start site region 55446
4930412F09Rik 6 30903562 to 30912860 9298 + lincRNA gene RIKEN cDNA 4930412F09 gene
Tssr1806 6 30903574 to 30903583 9 + TSS region transcription start site region 1806
Tssr60144 6 30915552 to 30915590 38 - TSS region transcription start site region 60144
Cpgi17263 6 30921329 to 30921644 315 CpG island CpG island 17263
Klf14 6 30956021 to 30958990 2969 - protein coding gene Kruppel-like factor 14
Cpgi17264 6 30957636 to 30959370 1734 CpG island CpG island 17264
Tssr60145 6 30958793 to 30958815 22 - TSS region transcription start site region 60145
Gm40359 6 31010065 to 31015564 5499 - lncRNA gene predicted gene, 40359
Tssr55447 6 31023557 to 31023559 2 + TSS region transcription start site region 55447
Cpgi17265 6 31037801 to 31038163 362 CpG island CpG island 17265
Tssr60146 6 31052518 to 31052522 4 - TSS region transcription start site region 60146
Mirc33 6 31062660 to 31063093 433 complex/cluster/region microRNA cluster 33, including Mir29a through Mir29b-1
Mir29a 6 31062660 to 31062747 87 - miRNA gene microRNA 29a
Mir29b-1 6 31063023 to 31063093 70 - miRNA gene microRNA 29b-1
Gm27019 6 31063092 to 31063495 403 - lincRNA gene predicted gene, 27019
Tssr60147 6 31069877 to 31069880 3 - TSS region transcription start site region 60147
Tssr60148 6 31087625 to 31087645 20 - TSS region transcription start site region 60148
Tssr60149 6 31088213 to 31088222 9 - TSS region transcription start site region 60149
Tssr60150 6 31088349 to 31088357 8 - TSS region transcription start site region 60150
Tssr60151 6 31088438 to 31088445 7 - TSS region transcription start site region 60151
Tssr60152 6 31088464 to 31088481 17 - TSS region transcription start site region 60152
Tssr60153 6 31088542 to 31088552 10 - TSS region transcription start site region 60153
Lncpint 6 31093563 to 31218474 124911 - lincRNA gene long non-protein coding RNA, Trp53 induced transcript
Gm13833 6 31102846 to 31104646 1800 + lincRNA gene predicted gene 13833
5330406M23Rik 6 31108827 to 31110920 2093 - unclassified gene RIKEN cDNA 5330406M23 gene
Tssr60154 6 31113473 to 31113482 9 - TSS region transcription start site region 60154
Tssr55448 6 31113770 to 31113780 10 + TSS region transcription start site region 55448
Tssr60155 6 31114802 to 31114820 18 - TSS region transcription start site region 60155
Tssr60156 6 31115016 to 31115051 35 - TSS region transcription start site region 60156
Tssr60157 6 31115087 to 31115104 17 - TSS region transcription start site region 60157
Tssr55449 6 31123102 to 31123140 38 + TSS region transcription start site region 55449
Tssr55450 6 31123236 to 31123239 3 + TSS region transcription start site region 55450
Tssr55451 6 31123856 to 31123867 11 + TSS region transcription start site region 55451
Tssr55452 6 31124197 to 31124213 16 + TSS region transcription start site region 55452
Tssr60158 6 31126337 to 31126341 4 - TSS region transcription start site region 60158
Tssr60159 6 31126494 to 31126503 9 - TSS region transcription start site region 60159
Tssr60160 6 31126512 to 31126537 25 - TSS region transcription start site region 60160
Tssr60161 6 31126544 to 31126561 17 - TSS region transcription start site region 60161
Tssr60162 6 31126703 to 31126730 27 - TSS region transcription start site region 60162
Tssr55453 6 31126737 to 31126742 5 + TSS region transcription start site region 55453
Tssr60163 6 31131696 to 31131711 15 - TSS region transcription start site region 60163
Tssr60164 6 31131717 to 31131726 9 - TSS region transcription start site region 60164
Tssr60165 6 31131824 to 31131846 22 - TSS region transcription start site region 60165
Gm13835 6 31141979 to 31142663 684 - pseudogene predicted gene 13835
Gm37728 6 31145128 to 31147419 2291 - unclassified gene predicted gene, 37728
Tssr60166 6 31156775 to 31156778 3 - TSS region transcription start site region 60166
Tssr55454 6 31159493 to 31159501 8 + TSS region transcription start site region 55454
Tssr1807 6 31165382 to 31165390 8 + TSS region transcription start site region 1807
Tssr60167 6 31184719 to 31184732 13 - TSS region transcription start site region 60167
Tssr60168 6 31190674 to 31190676 2 - TSS region transcription start site region 60168
Tssr60169 6 31196602 to 31196623 21 - TSS region transcription start site region 60169
Tssr60170 6 31202323 to 31202336 13 - TSS region transcription start site region 60170
Tssr60171 6 31205946 to 31205951 5 - TSS region transcription start site region 60171
Tssr60172 6 31207149 to 31207152 3 - TSS region transcription start site region 60172
Tssr60173 6 31211055 to 31211063 8 - TSS region transcription start site region 60173
Tssr60174 6 31211143 to 31211171 28 - TSS region transcription start site region 60174
Tssr60175 6 31211207 to 31211222 15 - TSS region transcription start site region 60175
Tssr60176 6 31213792 to 31213797 5 - TSS region transcription start site region 60176