Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:30688556-31118565

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108 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cep41 6 30653457 to 30693749 40292 - protein coding gene centrosomal protein 41
Cpgi17258 6 30693353 to 30693967 614 CpG island CpG island 17258
Tssr60138 6 30693677 to 30693737 60 - TSS region transcription start site region 60138
Tssr60139 6 30710527 to 30710538 11 - TSS region transcription start site region 60139
Gm14528 6 30719873 to 30720103 230 + pseudogene predicted gene 14528
Tssr55392 6 30723491 to 30723503 12 + TSS region transcription start site region 55392
Tssr55393 6 30723522 to 30723534 12 + TSS region transcription start site region 55393
Tssr55394 6 30723541 to 30723552 11 + TSS region transcription start site region 55394
Mest 6 30733506 to 30748466 14960 + protein coding gene mesoderm specific transcript
Gm27522 6 30734418 to 30734647 229 + unclassified non-coding RNA gene predicted gene, 27522
Gm44296 6 30735029 to 30735924 895 - antisense lncRNA gene predicted gene, 44296
Cpgi17259 6 30735382 to 30735808 426 CpG island CpG island 17259
Gm27568 6 30735964 to 30736062 98 + unclassified non-coding RNA gene predicted gene, 27568
Cpgi17260 6 30737011 to 30737463 452 CpG island CpG island 17260
Cpgi17261 6 30737764 to 30738506 742 CpG island CpG island 17261
Tssr55395 6 30738044 to 30738059 15 + TSS region transcription start site region 55395
Tssr55396 6 30740715 to 30740756 41 + TSS region transcription start site region 55396
Mir335 6 30741299 to 30741396 97 + miRNA gene microRNA 335
Tssr55397 6 30741374 to 30741378 4 + TSS region transcription start site region 55397
Tssr55398 6 30742530 to 30742576 46 + TSS region transcription start site region 55398
Tssr55399 6 30744346 to 30744376 30 + TSS region transcription start site region 55399
Tssr55400 6 30744878 to 30744890 12 + TSS region transcription start site region 55400
Tssr55401 6 30746271 to 30746293 22 + TSS region transcription start site region 55401
Tssr55402 6 30747125 to 30747162 37 + TSS region transcription start site region 55402
Tssr55403 6 30747167 to 30747209 42 + TSS region transcription start site region 55403
Tssr55404 6 30747246 to 30747262 16 + TSS region transcription start site region 55404
Tssr55405 6 30747319 to 30747333 14 + TSS region transcription start site region 55405
Tssr55406 6 30747336 to 30747361 25 + TSS region transcription start site region 55406
Tssr55407 6 30747362 to 30747383 21 + TSS region transcription start site region 55407
Tssr55408 6 30747443 to 30747450 7 + TSS region transcription start site region 55408
Copg2 6 30747554 to 30896794 149240 - protein coding gene coatomer protein complex, subunit gamma 2
Tssr55409 6 30747626 to 30747641 15 + TSS region transcription start site region 55409
Tssr55410 6 30747808 to 30747840 32 + TSS region transcription start site region 55410
Tssr55411 6 30751694 to 30751705 11 + TSS region transcription start site region 55411
Tssr55412 6 30751907 to 30751918 11 + TSS region transcription start site region 55412
Tssr55413 6 30752466 to 30752486 20 + TSS region transcription start site region 55413
Copg2os2 6 30802886 to 30809198 6312 unclassified non-coding RNA gene coatomer protein complex, subunit gamma 2, opposite strand 2
Tssr55414 6 30803209 to 30803228 19 + TSS region transcription start site region 55414
Tssr55415 6 30803354 to 30803370 16 + TSS region transcription start site region 55415
Tssr55416 6 30803374 to 30803390 16 + TSS region transcription start site region 55416
Tssr55417 6 30803821 to 30803836 15 + TSS region transcription start site region 55417
Tssr55418 6 30803917 to 30803929 12 + TSS region transcription start site region 55418
Tssr55419 6 30804100 to 30804109 9 + TSS region transcription start site region 55419
Tssr55420 6 30804185 to 30804209 24 + TSS region transcription start site region 55420
Tssr55421 6 30804298 to 30804311 13 + TSS region transcription start site region 55421
Tssr55422 6 30804795 to 30804817 22 + TSS region transcription start site region 55422
Tssr55423 6 30804819 to 30804824 5 + TSS region transcription start site region 55423
Tssr55424 6 30804834 to 30804841 7 + TSS region transcription start site region 55424
Tssr55425 6 30804878 to 30804887 9 + TSS region transcription start site region 55425
Tssr60140 6 30804881 to 30804893 12 - TSS region transcription start site region 60140
Tssr55426 6 30804900 to 30804914 14 + TSS region transcription start site region 55426
Tssr55427 6 30804949 to 30804965 16 + TSS region transcription start site region 55427
Tssr55428 6 30804970 to 30804980 10 + TSS region transcription start site region 55428
Tssr55429 6 30804983 to 30805006 23 + TSS region transcription start site region 55429
Tssr1805 6 30805010 to 30805015 5 + TSS region transcription start site region 1805
Tssr55430 6 30805031 to 30805044 13 + TSS region transcription start site region 55430
Tssr55431 6 30805066 to 30805080 14 + TSS region transcription start site region 55431
Tssr55432 6 30805165 to 30805176 11 + TSS region transcription start site region 55432
Tssr55433 6 30805186 to 30805195 9 + TSS region transcription start site region 55433
Tssr55434 6 30805202 to 30805212 10 + TSS region transcription start site region 55434
Tssr55435 6 30805427 to 30805442 15 + TSS region transcription start site region 55435
Tssr55436 6 30805457 to 30805467 10 + TSS region transcription start site region 55436
Tssr55437 6 30805535 to 30805546 11 + TSS region transcription start site region 55437
Tssr55438 6 30805610 to 30805624 14 + TSS region transcription start site region 55438
Tssr55439 6 30805657 to 30805666 9 + TSS region transcription start site region 55439
Tssr55440 6 30805739 to 30805758 19 + TSS region transcription start site region 55440
Tssr55441 6 30806217 to 30806237 20 + TSS region transcription start site region 55441
Tssr55442 6 30806310 to 30806328 18 + TSS region transcription start site region 55442
Tssr55443 6 30806395 to 30806409 14 + TSS region transcription start site region 55443
Tssr55444 6 30806493 to 30806516 23 + TSS region transcription start site region 55444
Tssr55445 6 30806543 to 30806583 40 + TSS region transcription start site region 55445
Tssr60141 6 30806613 to 30806617 4 - TSS region transcription start site region 60141
Tssr60142 6 30806791 to 30806804 13 - TSS region transcription start site region 60142
Gm38781 6 30885666 to 30894500 8834 + lncRNA gene predicted gene, 38781
Cpgi17262 6 30896035 to 30897084 1049 CpG island CpG island 17262
Tssr60143 6 30896735 to 30896785 50 - TSS region transcription start site region 60143
Tsga13 6 30896981 to 30915573 18592 - protein coding gene testis specific gene A13
Tssr55446 6 30903556 to 30903565 9 + TSS region transcription start site region 55446
4930412F09Rik 6 30903562 to 30912860 9298 + lincRNA gene RIKEN cDNA 4930412F09 gene
Tssr1806 6 30903574 to 30903583 9 + TSS region transcription start site region 1806
Tssr60144 6 30915552 to 30915590 38 - TSS region transcription start site region 60144
Cpgi17263 6 30921329 to 30921644 315 CpG island CpG island 17263
Klf14 6 30956021 to 30958990 2969 - protein coding gene Kruppel-like factor 14
Cpgi17264 6 30957636 to 30959370 1734 CpG island CpG island 17264
Tssr60145 6 30958793 to 30958815 22 - TSS region transcription start site region 60145
Gm40359 6 31010065 to 31015564 5499 - lncRNA gene predicted gene, 40359
Tssr55447 6 31023557 to 31023559 2 + TSS region transcription start site region 55447
Cpgi17265 6 31037801 to 31038163 362 CpG island CpG island 17265
Tssr60146 6 31052518 to 31052522 4 - TSS region transcription start site region 60146
Mir29a 6 31062660 to 31062747 87 - miRNA gene microRNA 29a
Mirc33 6 31062660 to 31063093 433 complex/cluster/region microRNA cluster 33, including Mir29a through Mir29b-1
Mir29b-1 6 31063023 to 31063093 70 - miRNA gene microRNA 29b-1
Gm27019 6 31063092 to 31063495 403 - lincRNA gene predicted gene, 27019
Tssr60147 6 31069877 to 31069880 3 - TSS region transcription start site region 60147
Tssr60148 6 31087625 to 31087645 20 - TSS region transcription start site region 60148
Tssr60149 6 31088213 to 31088222 9 - TSS region transcription start site region 60149
Tssr60150 6 31088349 to 31088357 8 - TSS region transcription start site region 60150
Tssr60151 6 31088438 to 31088445 7 - TSS region transcription start site region 60151
Tssr60152 6 31088464 to 31088481 17 - TSS region transcription start site region 60152
Tssr60153 6 31088542 to 31088552 10 - TSS region transcription start site region 60153
Lncpint 6 31093563 to 31218474 124911 - lincRNA gene long non-protein coding RNA, Trp53 induced transcript
Gm13833 6 31102846 to 31104646 1800 + lincRNA gene predicted gene 13833
5330406M23Rik 6 31108827 to 31110920 2093 - unclassified gene RIKEN cDNA 5330406M23 gene
Tssr60154 6 31113473 to 31113482 9 - TSS region transcription start site region 60154
Tssr55448 6 31113770 to 31113780 10 + TSS region transcription start site region 55448
Tssr60155 6 31114802 to 31114820 18 - TSS region transcription start site region 60155
Tssr60156 6 31115016 to 31115051 35 - TSS region transcription start site region 60156
Tssr60157 6 31115087 to 31115104 17 - TSS region transcription start site region 60157