Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:30333562-31482860

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283 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
tint 6 21480933 to 30647293 9166360 heritable phenotypic marker tail interaction with T complex
Gm25625 6 30347371 to 30347466 95 - rRNA gene predicted gene, 25625
Tssr55336 6 30353024 to 30353030 6 + TSS region transcription start site region 55336
Tssr55337 6 30359472 to 30359475 3 + TSS region transcription start site region 55337
Zc3hc1 6 30366380 to 30391028 24648 - protein coding gene zinc finger, C3HC type 1
n-R5s161 6 30379101 to 30379214 113 + rRNA gene nuclear encoded rRNA 5S 161
Cpgi17254 6 30390668 to 30391120 452 CpG island CpG island 17254
Tssr60116 6 30390997 to 30391029 32 - TSS region transcription start site region 60116
Cpgi17255 6 30401522 to 30402434 912 CpG island CpG island 17255
Tssr55338 6 30401866 to 30401965 99 + TSS region transcription start site region 55338
Klhdc10 6 30401868 to 30455179 53311 + protein coding gene kelch domain containing 10
Cpgi17256 6 30459739 to 30460259 520 CpG island CpG island 17256
Tssr55339 6 30460980 to 30460989 9 + TSS region transcription start site region 55339
1700012C14Rik 6 30460985 to 30463313 2328 + lincRNA gene RIKEN cDNA 1700012C14 gene
Tssr55340 6 30460991 to 30461000 9 + TSS region transcription start site region 55340
Tssr60117 6 30477548 to 30477552 4 - TSS region transcription start site region 60117
Tmem209 6 30481022 to 30509783 28761 - protein coding gene transmembrane protein 209
D6Ertd15e 6 30483990 to 30484210 220 DNA segment DNA segment, Chr 6, ERATO Doi 15, expressed
Tssr60118 6 30502555 to 30502558 3 - TSS region transcription start site region 60118
Tssr60119 6 30505959 to 30505980 21 - TSS region transcription start site region 60119
Cpgi17257 6 30509566 to 30509932 366 CpG island CpG island 17257
Tssr60120 6 30509706 to 30509733 27 - TSS region transcription start site region 60120
Tssr60121 6 30509738 to 30509757 19 - TSS region transcription start site region 60121
Tssr55341 6 30509827 to 30509848 21 + TSS region transcription start site region 55341
Tssr55342 6 30509849 to 30509889 40 + TSS region transcription start site region 55342
Ssmem1 6 30509849 to 30520254 10405 + protein coding gene serine-rich single-pass membrane protein 1
Tssr55343 6 30512283 to 30512288 5 + TSS region transcription start site region 55343
Tssr55344 6 30512294 to 30512319 25 + TSS region transcription start site region 55344
Tssr55345 6 30512322 to 30512333 11 + TSS region transcription start site region 55345
Tssr55346 6 30512340 to 30512345 5 + TSS region transcription start site region 55346
Tssr55347 6 30541635 to 30541650 15 + TSS region transcription start site region 55347
Cpa2 6 30541642 to 30564476 22834 + protein coding gene carboxypeptidase A2, pancreatic
Tssr55348 6 30544022 to 30544030 8 + TSS region transcription start site region 55348
Tssr55349 6 30544885 to 30544910 25 + TSS region transcription start site region 55349
Tssr55350 6 30544986 to 30544997 11 + TSS region transcription start site region 55350
Gm46955 6 30547637 to 30550785 3148 - lncRNA gene predicted gene, 46955
Tssr55351 6 30551460 to 30551464 4 + TSS region transcription start site region 55351
Tssr55352 6 30554596 to 30554601 5 + TSS region transcription start site region 55352
Tssr55353 6 30560507 to 30560512 5 + TSS region transcription start site region 55353
Tssr55354 6 30564398 to 30564416 18 + TSS region transcription start site region 55354
Tssr55355 6 30568367 to 30568382 15 + TSS region transcription start site region 55355
Cpa4 6 30568376 to 30592418 24042 + protein coding gene carboxypeptidase A4
Gm13781 6 30573153 to 30576035 2882 - antisense lncRNA gene predicted gene 13781
Tssr55356 6 30580875 to 30580886 11 + TSS region transcription start site region 55356
Gm31453 6 30594135 to 30610933 16798 - lncRNA gene predicted gene, 31453
Tssr60122 6 30610902 to 30610912 10 - TSS region transcription start site region 60122
Tssr60123 6 30610934 to 30610941 7 - TSS region transcription start site region 60123
Tssr55357 6 30610976 to 30610983 7 + TSS region transcription start site region 55357
Tssr55358 6 30610984 to 30611026 42 + TSS region transcription start site region 55358
Cpa5 6 30611010 to 30631740 20730 + protein coding gene carboxypeptidase A5
Tssr55359 6 30611029 to 30611040 11 + TSS region transcription start site region 55359
Cpa1 6 30639218 to 30645361 6143 + protein coding gene carboxypeptidase A1, pancreatic
Tssr55360 6 30639434 to 30639452 18 + TSS region transcription start site region 55360
Tssr1803 6 30639975 to 30640011 36 + TSS region transcription start site region 1803
Tssr55361 6 30640439 to 30640450 11 + TSS region transcription start site region 55361
Tssr55362 6 30640452 to 30640463 11 + TSS region transcription start site region 55362
Tssr55363 6 30640514 to 30640547 33 + TSS region transcription start site region 55363
Tssr55364 6 30640553 to 30640570 17 + TSS region transcription start site region 55364
Tssr55365 6 30640581 to 30640667 86 + TSS region transcription start site region 55365
Tssr60124 6 30640653 to 30640700 47 - TSS region transcription start site region 60124
Tssr55366 6 30640672 to 30640715 43 + TSS region transcription start site region 55366
Tssr60125 6 30640716 to 30640741 25 - TSS region transcription start site region 60125
Tssr55367 6 30640889 to 30640946 57 + TSS region transcription start site region 55367
Tssr60126 6 30640915 to 30640951 36 - TSS region transcription start site region 60126
Tssr55368 6 30641503 to 30641513 10 + TSS region transcription start site region 55368
Tssr55369 6 30641537 to 30641561 24 + TSS region transcription start site region 55369
Tssr55370 6 30641755 to 30641792 37 + TSS region transcription start site region 55370
Tssr60127 6 30641783 to 30641803 20 - TSS region transcription start site region 60127
Tssr55371 6 30641793 to 30641841 48 + TSS region transcription start site region 55371
Tssr60128 6 30641851 to 30641877 26 - TSS region transcription start site region 60128
Tssr55372 6 30642293 to 30642298 5 + TSS region transcription start site region 55372
Tssr55373 6 30642305 to 30642327 22 + TSS region transcription start site region 55373
Tssr60129 6 30642322 to 30642359 37 - TSS region transcription start site region 60129
Tssr55374 6 30642329 to 30642342 13 + TSS region transcription start site region 55374
Tssr55375 6 30642347 to 30642359 12 + TSS region transcription start site region 55375
Tssr55376 6 30642855 to 30642881 26 + TSS region transcription start site region 55376
Tssr55377 6 30642885 to 30642888 3 + TSS region transcription start site region 55377
Tssr55378 6 30642899 to 30642912 13 + TSS region transcription start site region 55378
Tssr55379 6 30642924 to 30642938 14 + TSS region transcription start site region 55379
Tssr55380 6 30642940 to 30642949 9 + TSS region transcription start site region 55380
Tssr55381 6 30642964 to 30643018 54 + TSS region transcription start site region 55381
Tssr55382 6 30643020 to 30643027 7 + TSS region transcription start site region 55382
Tssr60130 6 30643024 to 30643057 33 - TSS region transcription start site region 60130
Tssr55383 6 30643536 to 30643582 46 + TSS region transcription start site region 55383
Tssr55384 6 30643588 to 30643599 11 + TSS region transcription start site region 55384
Tssr55385 6 30645095 to 30645167 72 + TSS region transcription start site region 55385
Tssr60131 6 30645230 to 30645247 17 - TSS region transcription start site region 60131
Tssr55386 6 30645247 to 30645276 29 + TSS region transcription start site region 55386
Tssr60132 6 30645258 to 30645289 31 - TSS region transcription start site region 60132
Tssr55387 6 30645291 to 30645323 32 + TSS region transcription start site region 55387
D6Mit140 6 30647152 to 30647293 141 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 140
Cep41 6 30653457 to 30693749 40292 - protein coding gene centrosomal protein 41
Tssr60133 6 30669311 to 30669322 11 - TSS region transcription start site region 60133
Tssr60134 6 30669378 to 30669412 34 - TSS region transcription start site region 60134
Tssr60135 6 30669443 to 30669450 7 - TSS region transcription start site region 60135
Tssr60136 6 30669458 to 30669461 3 - TSS region transcription start site region 60136
Tssr60137 6 30669498 to 30669501 3 - TSS region transcription start site region 60137
Tssr55388 6 30670092 to 30670097 5 + TSS region transcription start site region 55388
Tssr55389 6 30670140 to 30670158 18 + TSS region transcription start site region 55389
Tssr55390 6 30670201 to 30670206 5 + TSS region transcription start site region 55390
Tssr55391 6 30670232 to 30670242 10 + TSS region transcription start site region 55391
D6Mit308 6 30671473 to 30671584 111 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 308
Gm13782 6 30673944 to 30682266 8322 + antisense lncRNA gene predicted gene 13782
Tssr1804 6 30680503 to 30680515 12 - TSS region transcription start site region 1804
Cpgi17258 6 30693353 to 30693967 614 CpG island CpG island 17258
Tssr60138 6 30693677 to 30693737 60 - TSS region transcription start site region 60138
Tssr60139 6 30710527 to 30710538 11 - TSS region transcription start site region 60139
Gm14528 6 30719873 to 30720103 230 + pseudogene predicted gene 14528
Tssr55392 6 30723491 to 30723503 12 + TSS region transcription start site region 55392
Tssr55393 6 30723522 to 30723534 12 + TSS region transcription start site region 55393
Tssr55394 6 30723541 to 30723552 11 + TSS region transcription start site region 55394
Mest 6 30733506 to 30748466 14960 + protein coding gene mesoderm specific transcript
Gm27522 6 30734418 to 30734647 229 + unclassified non-coding RNA gene predicted gene, 27522
Gm44296 6 30735029 to 30735924 895 - antisense lncRNA gene predicted gene, 44296
Cpgi17259 6 30735382 to 30735808 426 CpG island CpG island 17259
Gm27568 6 30735964 to 30736062 98 + unclassified non-coding RNA gene predicted gene, 27568
Cpgi17260 6 30737011 to 30737463 452 CpG island CpG island 17260
Cpgi17261 6 30737764 to 30738506 742 CpG island CpG island 17261
Tssr55395 6 30738044 to 30738059 15 + TSS region transcription start site region 55395
Tssr55396 6 30740715 to 30740756 41 + TSS region transcription start site region 55396
Mir335 6 30741299 to 30741396 97 + miRNA gene microRNA 335
Tssr55397 6 30741374 to 30741378 4 + TSS region transcription start site region 55397
Tssr55398 6 30742530 to 30742576 46 + TSS region transcription start site region 55398
Tssr55399 6 30744346 to 30744376 30 + TSS region transcription start site region 55399
Tssr55400 6 30744878 to 30744890 12 + TSS region transcription start site region 55400
Tssr55401 6 30746271 to 30746293 22 + TSS region transcription start site region 55401
Tssr55402 6 30747125 to 30747162 37 + TSS region transcription start site region 55402
Tssr55403 6 30747167 to 30747209 42 + TSS region transcription start site region 55403
Tssr55404 6 30747246 to 30747262 16 + TSS region transcription start site region 55404
Tssr55405 6 30747319 to 30747333 14 + TSS region transcription start site region 55405
Tssr55406 6 30747336 to 30747361 25 + TSS region transcription start site region 55406
Tssr55407 6 30747362 to 30747383 21 + TSS region transcription start site region 55407
Tssr55408 6 30747443 to 30747450 7 + TSS region transcription start site region 55408
Copg2 6 30747554 to 30896794 149240 - protein coding gene coatomer protein complex, subunit gamma 2
Tssr55409 6 30747626 to 30747641 15 + TSS region transcription start site region 55409
Tssr55410 6 30747808 to 30747840 32 + TSS region transcription start site region 55410
Tssr55411 6 30751694 to 30751705 11 + TSS region transcription start site region 55411
Tssr55412 6 30751907 to 30751918 11 + TSS region transcription start site region 55412
Tssr55413 6 30752466 to 30752486 20 + TSS region transcription start site region 55413
Copg2os2 6 30802886 to 30809198 6312 unclassified non-coding RNA gene coatomer protein complex, subunit gamma 2, opposite strand 2
Tssr55414 6 30803209 to 30803228 19 + TSS region transcription start site region 55414
Tssr55415 6 30803354 to 30803370 16 + TSS region transcription start site region 55415
Tssr55416 6 30803374 to 30803390 16 + TSS region transcription start site region 55416
Tssr55417 6 30803821 to 30803836 15 + TSS region transcription start site region 55417
Tssr55418 6 30803917 to 30803929 12 + TSS region transcription start site region 55418
Tssr55419 6 30804100 to 30804109 9 + TSS region transcription start site region 55419
Tssr55420 6 30804185 to 30804209 24 + TSS region transcription start site region 55420
Tssr55421 6 30804298 to 30804311 13 + TSS region transcription start site region 55421
Tssr55422 6 30804795 to 30804817 22 + TSS region transcription start site region 55422
Tssr55423 6 30804819 to 30804824 5 + TSS region transcription start site region 55423
Tssr55424 6 30804834 to 30804841 7 + TSS region transcription start site region 55424
Tssr55425 6 30804878 to 30804887 9 + TSS region transcription start site region 55425
Tssr60140 6 30804881 to 30804893 12 - TSS region transcription start site region 60140
Tssr55426 6 30804900 to 30804914 14 + TSS region transcription start site region 55426
Tssr55427 6 30804949 to 30804965 16 + TSS region transcription start site region 55427
Tssr55428 6 30804970 to 30804980 10 + TSS region transcription start site region 55428
Tssr55429 6 30804983 to 30805006 23 + TSS region transcription start site region 55429
Tssr1805 6 30805010 to 30805015 5 + TSS region transcription start site region 1805
Tssr55430 6 30805031 to 30805044 13 + TSS region transcription start site region 55430
Tssr55431 6 30805066 to 30805080 14 + TSS region transcription start site region 55431
Tssr55432 6 30805165 to 30805176 11 + TSS region transcription start site region 55432
Tssr55433 6 30805186 to 30805195 9 + TSS region transcription start site region 55433
Tssr55434 6 30805202 to 30805212 10 + TSS region transcription start site region 55434
Tssr55435 6 30805427 to 30805442 15 + TSS region transcription start site region 55435
Tssr55436 6 30805457 to 30805467 10 + TSS region transcription start site region 55436
Tssr55437 6 30805535 to 30805546 11 + TSS region transcription start site region 55437
Tssr55438 6 30805610 to 30805624 14 + TSS region transcription start site region 55438
Tssr55439 6 30805657 to 30805666 9 + TSS region transcription start site region 55439
Tssr55440 6 30805739 to 30805758 19 + TSS region transcription start site region 55440
Tssr55441 6 30806217 to 30806237 20 + TSS region transcription start site region 55441
Tssr55442 6 30806310 to 30806328 18 + TSS region transcription start site region 55442
Tssr55443 6 30806395 to 30806409 14 + TSS region transcription start site region 55443
Tssr55444 6 30806493 to 30806516 23 + TSS region transcription start site region 55444
Tssr55445 6 30806543 to 30806583 40 + TSS region transcription start site region 55445
Tssr60141 6 30806613 to 30806617 4 - TSS region transcription start site region 60141
Tssr60142 6 30806791 to 30806804 13 - TSS region transcription start site region 60142
Gm38781 6 30885666 to 30894500 8834 + lncRNA gene predicted gene, 38781
Cpgi17262 6 30896035 to 30897084 1049 CpG island CpG island 17262
Tssr60143 6 30896735 to 30896785 50 - TSS region transcription start site region 60143
Tsga13 6 30896981 to 30915573 18592 - protein coding gene testis specific gene A13
Tssr55446 6 30903556 to 30903565 9 + TSS region transcription start site region 55446
4930412F09Rik 6 30903562 to 30912860 9298 + lincRNA gene RIKEN cDNA 4930412F09 gene
Tssr1806 6 30903574 to 30903583 9 + TSS region transcription start site region 1806
Tssr60144 6 30915552 to 30915590 38 - TSS region transcription start site region 60144
Cpgi17263 6 30921329 to 30921644 315 CpG island CpG island 17263
Klf14 6 30956021 to 30958990 2969 - protein coding gene Kruppel-like factor 14
Cpgi17264 6 30957636 to 30959370 1734 CpG island CpG island 17264
Tssr60145 6 30958793 to 30958815 22 - TSS region transcription start site region 60145
Gm40359 6 31010065 to 31015564 5499 - lncRNA gene predicted gene, 40359
Tssr55447 6 31023557 to 31023559 2 + TSS region transcription start site region 55447
Cpgi17265 6 31037801 to 31038163 362 CpG island CpG island 17265
Tssr60146 6 31052518 to 31052522 4 - TSS region transcription start site region 60146
Mir29a 6 31062660 to 31062747 87 - miRNA gene microRNA 29a
Mirc33 6 31062660 to 31063093 433 complex/cluster/region microRNA cluster 33, including Mir29a through Mir29b-1
Mir29b-1 6 31063023 to 31063093 70 - miRNA gene microRNA 29b-1
Gm27019 6 31063092 to 31063495 403 - lincRNA gene predicted gene, 27019
Tssr60147 6 31069877 to 31069880 3 - TSS region transcription start site region 60147
Tssr60148 6 31087625 to 31087645 20 - TSS region transcription start site region 60148
Tssr60149 6 31088213 to 31088222 9 - TSS region transcription start site region 60149
Tssr60150 6 31088349 to 31088357 8 - TSS region transcription start site region 60150