Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:30098024-30608030

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nrf1 6 30047988 to 30153458 105470 + protein coding gene nuclear respiratory factor 1
Tssr55325 6 30102140 to 30102149 9 + TSS region transcription start site region 55325
Tssr55326 6 30102153 to 30102160 7 + TSS region transcription start site region 55326
Tssr60104 6 30135954 to 30135957 3 - TSS region transcription start site region 60104
Gm25580 6 30143801 to 30144127 326 - unclassified non-coding RNA gene predicted gene, 25580
Tssr60105 6 30147094 to 30147108 14 - TSS region transcription start site region 60105
Tssr60106 6 30157565 to 30157569 4 - TSS region transcription start site region 60106
Mirc35hg 6 30158640 to 30174125 15485 - lncRNA gene microRNA cluster 35, host gene
Mirc35 6 30165918 to 30169737 3819 complex/cluster/region microRNA cluster 35, including Mir182 through Mir183
Mir182 6 30165918 to 30165992 74 - miRNA gene microRNA 182
Mir96 6 30169446 to 30169551 105 - miRNA gene microRNA 96
Mirc40 6 30169446 to 30169737 291 complex/cluster/region micro RNA cluster 40, including Mir96 through Mir183
Mir183 6 30169668 to 30169737 69 - miRNA gene microRNA 183
Tssr55327 6 30172860 to 30172870 10 + TSS region transcription start site region 55327
Rncr4 6 30172893 to 30175126 2233 + lincRNA gene retina expressed non-coding RNA 4
Cpgi17248 6 30172916 to 30176582 3666 CpG island CpG island 17248
Tssr60107 6 30174076 to 30174079 3 - TSS region transcription start site region 60107
Tssr60108 6 30174100 to 30174109 9 - TSS region transcription start site region 60108
Tssr60109 6 30174117 to 30174136 19 - TSS region transcription start site region 60109
Tssr60110 6 30174728 to 30174746 18 - TSS region transcription start site region 60110
Tssr55328 6 30175257 to 30175264 7 + TSS region transcription start site region 55328
Tssr55329 6 30175277 to 30175282 5 + TSS region transcription start site region 55329
Tssr55330 6 30175325 to 30175341 16 + TSS region transcription start site region 55330
Tssr55331 6 30175357 to 30175379 22 + TSS region transcription start site region 55331
Tssr55332 6 30175380 to 30175399 19 + TSS region transcription start site region 55332
Tssr60111 6 30175733 to 30175736 3 - TSS region transcription start site region 60111
Tssr55333 6 30175815 to 30175835 20 + TSS region transcription start site region 55333
Tssr55334 6 30176481 to 30176485 4 + TSS region transcription start site region 55334
BB283400 6 30176623 to 30178046 1423 + lncRNA gene expressed sequence BB283400
Cpgi17249 6 30177534 to 30177714 180 CpG island CpG island 17249
Gm31221 6 30178155 to 30181830 3675 + lncRNA gene predicted gene, 31221
Cpgi17250 6 30178300 to 30178582 282 CpG island CpG island 17250
Cpgi17251 6 30179567 to 30179752 185 CpG island CpG island 17251
Tssr55335 6 30186605 to 30186612 7 + TSS region transcription start site region 55335
Cpgi17252 6 30205624 to 30206056 432 CpG island CpG island 17252
Ube2h 6 30211289 to 30304539 93250 - protein coding gene ubiquitin-conjugating enzyme E2H
Tssr60112 6 30245410 to 30245414 4 - TSS region transcription start site region 60112
Tssr60113 6 30254050 to 30254060 10 - TSS region transcription start site region 60113
Tssr60114 6 30302614 to 30302619 5 - TSS region transcription start site region 60114
Cpgi17253 6 30303780 to 30304825 1045 CpG island CpG island 17253
Tssr60115 6 30304513 to 30304570 57 - TSS region transcription start site region 60115
1700095J07Rik 6 30304605 to 30331779 27174 + lincRNA gene RIKEN cDNA 1700095J07 gene
Tssr1802 6 30304610 to 30304618 8 + TSS region transcription start site region 1802
Gm25625 6 30347371 to 30347466 95 - rRNA gene predicted gene, 25625
Tssr55336 6 30353024 to 30353030 6 + TSS region transcription start site region 55336
Tssr55337 6 30359472 to 30359475 3 + TSS region transcription start site region 55337
Zc3hc1 6 30366380 to 30391028 24648 - protein coding gene zinc finger, C3HC type 1
n-R5s161 6 30379101 to 30379214 113 + rRNA gene nuclear encoded rRNA 5S 161
Cpgi17254 6 30390668 to 30391120 452 CpG island CpG island 17254
Tssr60116 6 30390997 to 30391029 32 - TSS region transcription start site region 60116
Cpgi17255 6 30401522 to 30402434 912 CpG island CpG island 17255
Tssr55338 6 30401866 to 30401965 99 + TSS region transcription start site region 55338
Klhdc10 6 30401868 to 30455179 53311 + protein coding gene kelch domain containing 10
Cpgi17256 6 30459739 to 30460259 520 CpG island CpG island 17256
Tssr55339 6 30460980 to 30460989 9 + TSS region transcription start site region 55339
1700012C14Rik 6 30460985 to 30463313 2328 + lincRNA gene RIKEN cDNA 1700012C14 gene
Tssr55340 6 30460991 to 30461000 9 + TSS region transcription start site region 55340
Tssr60117 6 30477548 to 30477552 4 - TSS region transcription start site region 60117
Tmem209 6 30481022 to 30509783 28761 - protein coding gene transmembrane protein 209
D6Ertd15e 6 30483990 to 30484210 220 DNA segment DNA segment, Chr 6, ERATO Doi 15, expressed
Tssr60118 6 30502555 to 30502558 3 - TSS region transcription start site region 60118
Tssr60119 6 30505959 to 30505980 21 - TSS region transcription start site region 60119
Cpgi17257 6 30509566 to 30509932 366 CpG island CpG island 17257
Tssr60120 6 30509706 to 30509733 27 - TSS region transcription start site region 60120
Tssr60121 6 30509738 to 30509757 19 - TSS region transcription start site region 60121
Tssr55341 6 30509827 to 30509848 21 + TSS region transcription start site region 55341
Ssmem1 6 30509849 to 30520254 10405 + protein coding gene serine-rich single-pass membrane protein 1
Tssr55342 6 30509849 to 30509889 40 + TSS region transcription start site region 55342
Tssr55343 6 30512283 to 30512288 5 + TSS region transcription start site region 55343
Tssr55344 6 30512294 to 30512319 25 + TSS region transcription start site region 55344
Tssr55345 6 30512322 to 30512333 11 + TSS region transcription start site region 55345
Tssr55346 6 30512340 to 30512345 5 + TSS region transcription start site region 55346
Tssr55347 6 30541635 to 30541650 15 + TSS region transcription start site region 55347
Cpa2 6 30541642 to 30564476 22834 + protein coding gene carboxypeptidase A2, pancreatic
Tssr55348 6 30544022 to 30544030 8 + TSS region transcription start site region 55348
Tssr55349 6 30544885 to 30544910 25 + TSS region transcription start site region 55349
Tssr55350 6 30544986 to 30544997 11 + TSS region transcription start site region 55350
Gm46955 6 30547637 to 30550785 3148 - lncRNA gene predicted gene, 46955
Tssr55351 6 30551460 to 30551464 4 + TSS region transcription start site region 55351
Tssr55352 6 30554596 to 30554601 5 + TSS region transcription start site region 55352
Tssr55353 6 30560507 to 30560512 5 + TSS region transcription start site region 55353
Tssr55354 6 30564398 to 30564416 18 + TSS region transcription start site region 55354
Tssr55355 6 30568367 to 30568382 15 + TSS region transcription start site region 55355
Cpa4 6 30568376 to 30592418 24042 + protein coding gene carboxypeptidase A4
Gm13781 6 30573153 to 30576035 2882 - antisense lncRNA gene predicted gene 13781
Tssr55356 6 30580875 to 30580886 11 + TSS region transcription start site region 55356
Gm31453 6 30594135 to 30610933 16798 - lncRNA gene predicted gene, 31453