Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:29979567-30379752

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi17246 6 29985136 to 29985784 648 CpG island CpG island 17246
Tssr55317 6 29985296 to 29985308 12 + TSS region transcription start site region 55317
Tssr55318 6 29985317 to 29985344 27 + TSS region transcription start site region 55318
Smkr-ps 6 29985329 to 29993531 8202 + pseudogene smal lysine rich protein 1, pseudogene
Tssr55319 6 29985346 to 29985353 7 + TSS region transcription start site region 55319
Tssr55320 6 29985357 to 29985366 9 + TSS region transcription start site region 55320
Gm23049 6 29988388 to 29988489 101 + miRNA gene predicted gene, 23049
Tssr55321 6 30027196 to 30027200 4 + TSS region transcription start site region 55321
1700080G18Rik 6 30047400 to 30049144 1744 - protein coding gene RIKEN cDNA 1700080G18 gene
Cpgi17247 6 30047532 to 30049084 1552 CpG island CpG island 17247
Tssr60103 6 30047923 to 30047954 31 - TSS region transcription start site region 60103
Tssr55322 6 30047979 to 30048049 70 + TSS region transcription start site region 55322
Nrf1 6 30047988 to 30153458 105470 + protein coding gene nuclear respiratory factor 1
Tssr55323 6 30048062 to 30048078 16 + TSS region transcription start site region 55323
Tssr55324 6 30065519 to 30065522 3 + TSS region transcription start site region 55324
Tssr1801 6 30079941 to 30079946 5 + TSS region transcription start site region 1801
Tssr55325 6 30102140 to 30102149 9 + TSS region transcription start site region 55325
Tssr55326 6 30102153 to 30102160 7 + TSS region transcription start site region 55326
Tssr60104 6 30135954 to 30135957 3 - TSS region transcription start site region 60104
Gm25580 6 30143801 to 30144127 326 - unclassified non-coding RNA gene predicted gene, 25580
Tssr60105 6 30147094 to 30147108 14 - TSS region transcription start site region 60105
Tssr60106 6 30157565 to 30157569 4 - TSS region transcription start site region 60106
Mirc35hg 6 30158640 to 30174125 15485 - lncRNA gene microRNA cluster 35, host gene
Mirc35 6 30165918 to 30169737 3819 complex/cluster/region microRNA cluster 35, including Mir182 through Mir183
Mir182 6 30165918 to 30165992 74 - miRNA gene microRNA 182
Mir96 6 30169446 to 30169551 105 - miRNA gene microRNA 96
Mirc40 6 30169446 to 30169737 291 complex/cluster/region micro RNA cluster 40, including Mir96 through Mir183
Mir183 6 30169668 to 30169737 69 - miRNA gene microRNA 183
Tssr55327 6 30172860 to 30172870 10 + TSS region transcription start site region 55327
Rncr4 6 30172893 to 30175126 2233 + lincRNA gene retina expressed non-coding RNA 4
Cpgi17248 6 30172916 to 30176582 3666 CpG island CpG island 17248
Tssr60107 6 30174076 to 30174079 3 - TSS region transcription start site region 60107
Tssr60108 6 30174100 to 30174109 9 - TSS region transcription start site region 60108
Tssr60109 6 30174117 to 30174136 19 - TSS region transcription start site region 60109
Tssr60110 6 30174728 to 30174746 18 - TSS region transcription start site region 60110
Tssr55328 6 30175257 to 30175264 7 + TSS region transcription start site region 55328
Tssr55329 6 30175277 to 30175282 5 + TSS region transcription start site region 55329
Tssr55330 6 30175325 to 30175341 16 + TSS region transcription start site region 55330
Tssr55331 6 30175357 to 30175379 22 + TSS region transcription start site region 55331
Tssr55332 6 30175380 to 30175399 19 + TSS region transcription start site region 55332
Tssr60111 6 30175733 to 30175736 3 - TSS region transcription start site region 60111
Tssr55333 6 30175815 to 30175835 20 + TSS region transcription start site region 55333
Tssr55334 6 30176481 to 30176485 4 + TSS region transcription start site region 55334
BB283400 6 30176623 to 30178046 1423 + lncRNA gene expressed sequence BB283400
Cpgi17249 6 30177534 to 30177714 180 CpG island CpG island 17249
Gm31221 6 30178155 to 30181830 3675 + lncRNA gene predicted gene, 31221
Cpgi17250 6 30178300 to 30178582 282 CpG island CpG island 17250
Cpgi17251 6 30179567 to 30179752 185 CpG island CpG island 17251
Tssr55335 6 30186605 to 30186612 7 + TSS region transcription start site region 55335
Cpgi17252 6 30205624 to 30206056 432 CpG island CpG island 17252
Ube2h 6 30211289 to 30304539 93250 - protein coding gene ubiquitin-conjugating enzyme E2H
Tssr60112 6 30245410 to 30245414 4 - TSS region transcription start site region 60112
Tssr60113 6 30254050 to 30254060 10 - TSS region transcription start site region 60113
Tssr60114 6 30302614 to 30302619 5 - TSS region transcription start site region 60114
Cpgi17253 6 30303780 to 30304825 1045 CpG island CpG island 17253
Tssr60115 6 30304513 to 30304570 57 - TSS region transcription start site region 60115
1700095J07Rik 6 30304605 to 30331779 27174 + lincRNA gene RIKEN cDNA 1700095J07 gene
Tssr1802 6 30304610 to 30304618 8 + TSS region transcription start site region 1802
Gm25625 6 30347371 to 30347466 95 - rRNA gene predicted gene, 25625
Tssr55336 6 30353024 to 30353030 6 + TSS region transcription start site region 55336
Tssr55337 6 30359472 to 30359475 3 + TSS region transcription start site region 55337
Zc3hc1 6 30366380 to 30391028 24648 - protein coding gene zinc finger, C3HC type 1
n-R5s161 6 30379101 to 30379214 113 + rRNA gene nuclear encoded rRNA 5S 161