Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:29972294-31052319

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249 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
tint 6 21480933 to 30647293 9166360 heritable phenotypic marker tail interaction with T complex
Cpgi17246 6 29985136 to 29985784 648 CpG island CpG island 17246
Tssr55317 6 29985296 to 29985308 12 + TSS region transcription start site region 55317
Tssr55318 6 29985317 to 29985344 27 + TSS region transcription start site region 55318
Smkr-ps 6 29985329 to 29993531 8202 + pseudogene smal lysine rich protein 1, pseudogene
Tssr55319 6 29985346 to 29985353 7 + TSS region transcription start site region 55319
Tssr55320 6 29985357 to 29985366 9 + TSS region transcription start site region 55320
Gm23049 6 29988388 to 29988489 101 + miRNA gene predicted gene, 23049
Tssr55321 6 30027196 to 30027200 4 + TSS region transcription start site region 55321
1700080G18Rik 6 30047400 to 30049144 1744 - protein coding gene RIKEN cDNA 1700080G18 gene
Cpgi17247 6 30047532 to 30049084 1552 CpG island CpG island 17247
Tssr60103 6 30047923 to 30047954 31 - TSS region transcription start site region 60103
Tssr55322 6 30047979 to 30048049 70 + TSS region transcription start site region 55322
Nrf1 6 30047988 to 30153458 105470 + protein coding gene nuclear respiratory factor 1
Tssr55323 6 30048062 to 30048078 16 + TSS region transcription start site region 55323
Tssr55324 6 30065519 to 30065522 3 + TSS region transcription start site region 55324
Tssr1801 6 30079941 to 30079946 5 + TSS region transcription start site region 1801
Tssr55325 6 30102140 to 30102149 9 + TSS region transcription start site region 55325
Tssr55326 6 30102153 to 30102160 7 + TSS region transcription start site region 55326
Tssr60104 6 30135954 to 30135957 3 - TSS region transcription start site region 60104
Gm25580 6 30143801 to 30144127 326 - unclassified non-coding RNA gene predicted gene, 25580
Tssr60105 6 30147094 to 30147108 14 - TSS region transcription start site region 60105
Tssr60106 6 30157565 to 30157569 4 - TSS region transcription start site region 60106
Mirc35hg 6 30158640 to 30174125 15485 - lncRNA gene microRNA cluster 35, host gene
Mir182 6 30165918 to 30165992 74 - miRNA gene microRNA 182
Mirc35 6 30165918 to 30169737 3819 complex/cluster/region microRNA cluster 35, including Mir182 through Mir183
Mirc40 6 30169446 to 30169737 291 complex/cluster/region micro RNA cluster 40, including Mir96 through Mir183
Mir96 6 30169446 to 30169551 105 - miRNA gene microRNA 96
Mir183 6 30169668 to 30169737 69 - miRNA gene microRNA 183
Tssr55327 6 30172860 to 30172870 10 + TSS region transcription start site region 55327
Rncr4 6 30172893 to 30175126 2233 + lincRNA gene retina expressed non-coding RNA 4
Cpgi17248 6 30172916 to 30176582 3666 CpG island CpG island 17248
Tssr60107 6 30174076 to 30174079 3 - TSS region transcription start site region 60107
Tssr60108 6 30174100 to 30174109 9 - TSS region transcription start site region 60108
Tssr60109 6 30174117 to 30174136 19 - TSS region transcription start site region 60109
Tssr60110 6 30174728 to 30174746 18 - TSS region transcription start site region 60110
Tssr55328 6 30175257 to 30175264 7 + TSS region transcription start site region 55328
Tssr55329 6 30175277 to 30175282 5 + TSS region transcription start site region 55329
Tssr55330 6 30175325 to 30175341 16 + TSS region transcription start site region 55330
Tssr55331 6 30175357 to 30175379 22 + TSS region transcription start site region 55331
Tssr55332 6 30175380 to 30175399 19 + TSS region transcription start site region 55332
Tssr60111 6 30175733 to 30175736 3 - TSS region transcription start site region 60111
Tssr55333 6 30175815 to 30175835 20 + TSS region transcription start site region 55333
Tssr55334 6 30176481 to 30176485 4 + TSS region transcription start site region 55334
BB283400 6 30176623 to 30178046 1423 + lncRNA gene expressed sequence BB283400
Cpgi17249 6 30177534 to 30177714 180 CpG island CpG island 17249
Gm31221 6 30178155 to 30181830 3675 + lncRNA gene predicted gene, 31221
Cpgi17250 6 30178300 to 30178582 282 CpG island CpG island 17250
Cpgi17251 6 30179567 to 30179752 185 CpG island CpG island 17251
Tssr55335 6 30186605 to 30186612 7 + TSS region transcription start site region 55335
Cpgi17252 6 30205624 to 30206056 432 CpG island CpG island 17252
Ube2h 6 30211289 to 30304539 93250 - protein coding gene ubiquitin-conjugating enzyme E2H
Tssr60112 6 30245410 to 30245414 4 - TSS region transcription start site region 60112
Tssr60113 6 30254050 to 30254060 10 - TSS region transcription start site region 60113
Tssr60114 6 30302614 to 30302619 5 - TSS region transcription start site region 60114
Cpgi17253 6 30303780 to 30304825 1045 CpG island CpG island 17253
Tssr60115 6 30304513 to 30304570 57 - TSS region transcription start site region 60115
1700095J07Rik 6 30304605 to 30331779 27174 + lincRNA gene RIKEN cDNA 1700095J07 gene
Tssr1802 6 30304610 to 30304618 8 + TSS region transcription start site region 1802
Gm25625 6 30347371 to 30347466 95 - rRNA gene predicted gene, 25625
Tssr55336 6 30353024 to 30353030 6 + TSS region transcription start site region 55336
Tssr55337 6 30359472 to 30359475 3 + TSS region transcription start site region 55337
Zc3hc1 6 30366380 to 30391028 24648 - protein coding gene zinc finger, C3HC type 1
n-R5s161 6 30379101 to 30379214 113 + rRNA gene nuclear encoded rRNA 5S 161
Cpgi17254 6 30390668 to 30391120 452 CpG island CpG island 17254
Tssr60116 6 30390997 to 30391029 32 - TSS region transcription start site region 60116
Cpgi17255 6 30401522 to 30402434 912 CpG island CpG island 17255
Tssr55338 6 30401866 to 30401965 99 + TSS region transcription start site region 55338
Klhdc10 6 30401868 to 30455179 53311 + protein coding gene kelch domain containing 10
Cpgi17256 6 30459739 to 30460259 520 CpG island CpG island 17256
Tssr55339 6 30460980 to 30460989 9 + TSS region transcription start site region 55339
1700012C14Rik 6 30460985 to 30463313 2328 + lincRNA gene RIKEN cDNA 1700012C14 gene
Tssr55340 6 30460991 to 30461000 9 + TSS region transcription start site region 55340
Tssr60117 6 30477548 to 30477552 4 - TSS region transcription start site region 60117
Tmem209 6 30481022 to 30509783 28761 - protein coding gene transmembrane protein 209
D6Ertd15e 6 30483990 to 30484210 220 DNA segment DNA segment, Chr 6, ERATO Doi 15, expressed
Tssr60118 6 30502555 to 30502558 3 - TSS region transcription start site region 60118
Tssr60119 6 30505959 to 30505980 21 - TSS region transcription start site region 60119
Cpgi17257 6 30509566 to 30509932 366 CpG island CpG island 17257
Tssr60120 6 30509706 to 30509733 27 - TSS region transcription start site region 60120
Tssr60121 6 30509738 to 30509757 19 - TSS region transcription start site region 60121
Tssr55341 6 30509827 to 30509848 21 + TSS region transcription start site region 55341
Ssmem1 6 30509849 to 30520254 10405 + protein coding gene serine-rich single-pass membrane protein 1
Tssr55342 6 30509849 to 30509889 40 + TSS region transcription start site region 55342
Tssr55343 6 30512283 to 30512288 5 + TSS region transcription start site region 55343
Tssr55344 6 30512294 to 30512319 25 + TSS region transcription start site region 55344
Tssr55345 6 30512322 to 30512333 11 + TSS region transcription start site region 55345
Tssr55346 6 30512340 to 30512345 5 + TSS region transcription start site region 55346
Tssr55347 6 30541635 to 30541650 15 + TSS region transcription start site region 55347
Cpa2 6 30541642 to 30564476 22834 + protein coding gene carboxypeptidase A2, pancreatic
Tssr55348 6 30544022 to 30544030 8 + TSS region transcription start site region 55348
Tssr55349 6 30544885 to 30544910 25 + TSS region transcription start site region 55349
Tssr55350 6 30544986 to 30544997 11 + TSS region transcription start site region 55350
Gm46955 6 30547637 to 30550785 3148 - lncRNA gene predicted gene, 46955
Tssr55351 6 30551460 to 30551464 4 + TSS region transcription start site region 55351
Tssr55352 6 30554596 to 30554601 5 + TSS region transcription start site region 55352
Tssr55353 6 30560507 to 30560512 5 + TSS region transcription start site region 55353
Tssr55354 6 30564398 to 30564416 18 + TSS region transcription start site region 55354
Tssr55355 6 30568367 to 30568382 15 + TSS region transcription start site region 55355
Cpa4 6 30568376 to 30592418 24042 + protein coding gene carboxypeptidase A4
Gm13781 6 30573153 to 30576035 2882 - antisense lncRNA gene predicted gene 13781
Tssr55356 6 30580875 to 30580886 11 + TSS region transcription start site region 55356
Gm31453 6 30594135 to 30610933 16798 - lncRNA gene predicted gene, 31453
Tssr60122 6 30610902 to 30610912 10 - TSS region transcription start site region 60122
Tssr60123 6 30610934 to 30610941 7 - TSS region transcription start site region 60123
Tssr55357 6 30610976 to 30610983 7 + TSS region transcription start site region 55357
Tssr55358 6 30610984 to 30611026 42 + TSS region transcription start site region 55358
Cpa5 6 30611010 to 30631740 20730 + protein coding gene carboxypeptidase A5
Tssr55359 6 30611029 to 30611040 11 + TSS region transcription start site region 55359
Cpa1 6 30639218 to 30645361 6143 + protein coding gene carboxypeptidase A1, pancreatic
Tssr55360 6 30639434 to 30639452 18 + TSS region transcription start site region 55360
Tssr1803 6 30639975 to 30640011 36 + TSS region transcription start site region 1803
Tssr55361 6 30640439 to 30640450 11 + TSS region transcription start site region 55361
Tssr55362 6 30640452 to 30640463 11 + TSS region transcription start site region 55362
Tssr55363 6 30640514 to 30640547 33 + TSS region transcription start site region 55363
Tssr55364 6 30640553 to 30640570 17 + TSS region transcription start site region 55364
Tssr55365 6 30640581 to 30640667 86 + TSS region transcription start site region 55365
Tssr60124 6 30640653 to 30640700 47 - TSS region transcription start site region 60124
Tssr55366 6 30640672 to 30640715 43 + TSS region transcription start site region 55366
Tssr60125 6 30640716 to 30640741 25 - TSS region transcription start site region 60125
Tssr55367 6 30640889 to 30640946 57 + TSS region transcription start site region 55367
Tssr60126 6 30640915 to 30640951 36 - TSS region transcription start site region 60126
Tssr55368 6 30641503 to 30641513 10 + TSS region transcription start site region 55368
Tssr55369 6 30641537 to 30641561 24 + TSS region transcription start site region 55369
Tssr55370 6 30641755 to 30641792 37 + TSS region transcription start site region 55370
Tssr60127 6 30641783 to 30641803 20 - TSS region transcription start site region 60127
Tssr55371 6 30641793 to 30641841 48 + TSS region transcription start site region 55371
Tssr60128 6 30641851 to 30641877 26 - TSS region transcription start site region 60128
Tssr55372 6 30642293 to 30642298 5 + TSS region transcription start site region 55372
Tssr55373 6 30642305 to 30642327 22 + TSS region transcription start site region 55373
Tssr60129 6 30642322 to 30642359 37 - TSS region transcription start site region 60129
Tssr55374 6 30642329 to 30642342 13 + TSS region transcription start site region 55374
Tssr55375 6 30642347 to 30642359 12 + TSS region transcription start site region 55375
Tssr55376 6 30642855 to 30642881 26 + TSS region transcription start site region 55376
Tssr55377 6 30642885 to 30642888 3 + TSS region transcription start site region 55377
Tssr55378 6 30642899 to 30642912 13 + TSS region transcription start site region 55378
Tssr55379 6 30642924 to 30642938 14 + TSS region transcription start site region 55379
Tssr55380 6 30642940 to 30642949 9 + TSS region transcription start site region 55380
Tssr55381 6 30642964 to 30643018 54 + TSS region transcription start site region 55381
Tssr55382 6 30643020 to 30643027 7 + TSS region transcription start site region 55382
Tssr60130 6 30643024 to 30643057 33 - TSS region transcription start site region 60130
Tssr55383 6 30643536 to 30643582 46 + TSS region transcription start site region 55383
Tssr55384 6 30643588 to 30643599 11 + TSS region transcription start site region 55384
Tssr55385 6 30645095 to 30645167 72 + TSS region transcription start site region 55385
Tssr60131 6 30645230 to 30645247 17 - TSS region transcription start site region 60131
Tssr55386 6 30645247 to 30645276 29 + TSS region transcription start site region 55386
Tssr60132 6 30645258 to 30645289 31 - TSS region transcription start site region 60132
Tssr55387 6 30645291 to 30645323 32 + TSS region transcription start site region 55387
D6Mit140 6 30647152 to 30647293 141 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 140
Cep41 6 30653457 to 30693749 40292 - protein coding gene centrosomal protein 41
Tssr60133 6 30669311 to 30669322 11 - TSS region transcription start site region 60133
Tssr60134 6 30669378 to 30669412 34 - TSS region transcription start site region 60134
Tssr60135 6 30669443 to 30669450 7 - TSS region transcription start site region 60135
Tssr60136 6 30669458 to 30669461 3 - TSS region transcription start site region 60136
Tssr60137 6 30669498 to 30669501 3 - TSS region transcription start site region 60137
Tssr55388 6 30670092 to 30670097 5 + TSS region transcription start site region 55388
Tssr55389 6 30670140 to 30670158 18 + TSS region transcription start site region 55389
Tssr55390 6 30670201 to 30670206 5 + TSS region transcription start site region 55390
Tssr55391 6 30670232 to 30670242 10 + TSS region transcription start site region 55391
D6Mit308 6 30671473 to 30671584 111 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 308
Gm13782 6 30673944 to 30682266 8322 + antisense lncRNA gene predicted gene 13782
Tssr1804 6 30680503 to 30680515 12 - TSS region transcription start site region 1804
Cpgi17258 6 30693353 to 30693967 614 CpG island CpG island 17258
Tssr60138 6 30693677 to 30693737 60 - TSS region transcription start site region 60138
Tssr60139 6 30710527 to 30710538 11 - TSS region transcription start site region 60139
Gm14528 6 30719873 to 30720103 230 + pseudogene predicted gene 14528
Tssr55392 6 30723491 to 30723503 12 + TSS region transcription start site region 55392
Tssr55393 6 30723522 to 30723534 12 + TSS region transcription start site region 55393
Tssr55394 6 30723541 to 30723552 11 + TSS region transcription start site region 55394
Mest 6 30733506 to 30748466 14960 + protein coding gene mesoderm specific transcript
Gm27522 6 30734418 to 30734647 229 + unclassified non-coding RNA gene predicted gene, 27522
Gm44296 6 30735029 to 30735924 895 - antisense lncRNA gene predicted gene, 44296
Cpgi17259 6 30735382 to 30735808 426 CpG island CpG island 17259
Gm27568 6 30735964 to 30736062 98 + unclassified non-coding RNA gene predicted gene, 27568
Cpgi17260 6 30737011 to 30737463 452 CpG island CpG island 17260
Cpgi17261 6 30737764 to 30738506 742 CpG island CpG island 17261
Tssr55395 6 30738044 to 30738059 15 + TSS region transcription start site region 55395
Tssr55396 6 30740715 to 30740756 41 + TSS region transcription start site region 55396
Mir335 6 30741299 to 30741396 97 + miRNA gene microRNA 335
Tssr55397 6 30741374 to 30741378 4 + TSS region transcription start site region 55397
Tssr55398 6 30742530 to 30742576 46 + TSS region transcription start site region 55398
Tssr55399 6 30744346 to 30744376 30 + TSS region transcription start site region 55399
Tssr55400 6 30744878 to 30744890 12 + TSS region transcription start site region 55400
Tssr55401 6 30746271 to 30746293 22 + TSS region transcription start site region 55401
Tssr55402 6 30747125 to 30747162 37 + TSS region transcription start site region 55402
Tssr55403 6 30747167 to 30747209 42 + TSS region transcription start site region 55403
Tssr55404 6 30747246 to 30747262 16 + TSS region transcription start site region 55404
Tssr55405 6 30747319 to 30747333 14 + TSS region transcription start site region 55405
Tssr55406 6 30747336 to 30747361 25 + TSS region transcription start site region 55406
Tssr55407 6 30747362 to 30747383 21 + TSS region transcription start site region 55407
Tssr55408 6 30747443 to 30747450 7 + TSS region transcription start site region 55408
Copg2 6 30747554 to 30896794 149240 - protein coding gene coatomer protein complex, subunit gamma 2
Tssr55409 6 30747626 to 30747641 15 + TSS region transcription start site region 55409
Tssr55410 6 30747808 to 30747840 32 + TSS region transcription start site region 55410
Tssr55411 6 30751694 to 30751705 11 + TSS region transcription start site region 55411
Tssr55412 6 30751907 to 30751918 11 + TSS region transcription start site region 55412
Tssr55413 6 30752466 to 30752486 20 + TSS region transcription start site region 55413
Copg2os2 6 30802886 to 30809198 6312 unclassified non-coding RNA gene coatomer protein complex, subunit gamma 2, opposite strand 2
Tssr55414 6 30803209 to 30803228 19 + TSS region transcription start site region 55414
Tssr55415 6 30803354 to 30803370 16 + TSS region transcription start site region 55415