Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:29535631-29935663

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Irf5 6 29526625 to 29541871 15246 + protein coding gene interferon regulatory factor 5
Tssr55279 6 29536028 to 29536064 36 + TSS region transcription start site region 55279
Tssr55280 6 29537059 to 29537076 17 + TSS region transcription start site region 55280
Tnpo3 6 29540827 to 29609887 69060 - protein coding gene transportin 3
Tssr55281 6 29540887 to 29540891 4 + TSS region transcription start site region 55281
Tssr55282 6 29540977 to 29540983 6 + TSS region transcription start site region 55282
Gm43029 6 29546604 to 29548138 1534 - unclassified gene predicted gene 43029
Tssr60099 6 29554832 to 29554867 35 - TSS region transcription start site region 60099
Cpgi17239 6 29609029 to 29610041 1012 CpG island CpG island 17239
Tssr60100 6 29609608 to 29609642 34 - TSS region transcription start site region 60100
Tssr60101 6 29609794 to 29609805 11 - TSS region transcription start site region 60101
Tssr60102 6 29609811 to 29609872 61 - TSS region transcription start site region 60102
Gm30896 6 29675961 to 29677529 1568 + lncRNA gene predicted gene, 30896
Gm38780 6 29686901 to 29688724 1823 - lncRNA gene predicted gene, 38780
Cpgi17240 6 29693833 to 29694925 1092 CpG island CpG island 17240
Tssr55283 6 29694182 to 29694194 12 + TSS region transcription start site region 55283
Tssr55284 6 29694204 to 29694250 46 + TSS region transcription start site region 55284
Tspan33 6 29694222 to 29718559 24337 + protein coding gene tetraspanin 33
Tssr1798 6 29694251 to 29694254 3 + TSS region transcription start site region 1798
Tssr55285 6 29694255 to 29694271 16 + TSS region transcription start site region 55285
Tssr55286 6 29699033 to 29699037 4 + TSS region transcription start site region 55286
Cpgi17241 6 29718897 to 29719077 180 CpG island CpG island 17241
Cpgi17242 6 29735339 to 29736671 1332 CpG island CpG island 17242
Tssr55287 6 29735471 to 29735547 76 + TSS region transcription start site region 55287
Smo 6 29735503 to 29761365 25862 + protein coding gene smoothened, frizzled class receptor
Tssr55288 6 29735611 to 29735629 18 + TSS region transcription start site region 55288
Tssr55289 6 29735631 to 29735663 32 + TSS region transcription start site region 55289
Tssr55290 6 29735667 to 29735680 13 + TSS region transcription start site region 55290
Tssr55291 6 29736125 to 29736149 24 + TSS region transcription start site region 55291
Tssr55292 6 29746759 to 29746766 7 + TSS region transcription start site region 55292
Gm13717 6 29750761 to 29751125 364 + pseudogene predicted gene 13717
Bts2 6 29751222 to 29751334 112 QTL bladder tumor susceptibility 2
D6Mit159 6 29751222 to 29751334 112 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 159
Obrq2 6 29751222 to 29751334 112 QTL obesity resistance QTL 2
Hdp1 6 29751222 to 75544489 45793267 heritable phenotypic marker high doppler 1
Bmiq1 6 29751334 to 4503823 -25247511 QTL body mass index QTL 1
Tssr55293 6 29760901 to 29760933 32 + TSS region transcription start site region 55293
Cpgi17244 6 29767853 to 29769348 1495 CpG island CpG island 17244
Tssr55294 6 29768274 to 29768290 16 + TSS region transcription start site region 55294
Ahcyl2 6 29768379 to 29912310 143931 + protein coding gene S-adenosylhomocysteine hydrolase-like 2
Tssr55295 6 29768473 to 29768542 69 + TSS region transcription start site region 55295
Tssr55296 6 29768550 to 29768555 5 + TSS region transcription start site region 55296
Tssr55297 6 29773006 to 29773010 4 + TSS region transcription start site region 55297
Tssr55298 6 29792133 to 29792136 3 + TSS region transcription start site region 55298
Tssr55299 6 29831943 to 29831946 3 + TSS region transcription start site region 55299
Tssr55300 6 29853746 to 29853790 44 + TSS region transcription start site region 55300
Tssr1799 6 29853961 to 29853969 8 + TSS region transcription start site region 1799
Tssr55301 6 29853983 to 29853998 15 + TSS region transcription start site region 55301
Tssr55302 6 29854021 to 29854057 36 + TSS region transcription start site region 55302
Tssr55303 6 29854060 to 29854073 13 + TSS region transcription start site region 55303
Tssr55304 6 29859374 to 29859381 7 + TSS region transcription start site region 55304
Tssr55305 6 29859662 to 29859684 22 + TSS region transcription start site region 55305
Tssr55306 6 29859686 to 29859701 15 + TSS region transcription start site region 55306
Tssr55307 6 29870263 to 29870270 7 + TSS region transcription start site region 55307
Tssr55308 6 29870295 to 29870300 5 + TSS region transcription start site region 55308
Tssr55309 6 29870558 to 29870602 44 + TSS region transcription start site region 55309
Tssr55310 6 29876707 to 29876710 3 + TSS region transcription start site region 55310
Tssr55311 6 29887918 to 29887921 3 + TSS region transcription start site region 55311
Tssr55312 6 29894726 to 29894733 7 + TSS region transcription start site region 55312
Tssr55313 6 29894751 to 29894776 25 + TSS region transcription start site region 55313
Tssr55314 6 29894787 to 29894799 12 + TSS region transcription start site region 55314
4930528J11Rik 6 29912023 to 29915633 3610 - unclassified gene RIKEN cDNA 4930528J11 gene
Tssr1800 6 29914703 to 29914707 4 + TSS region transcription start site region 1800
Cpgi17245 6 29916565 to 29917743 1178 CpG island CpG island 17245
Tssr55315 6 29917005 to 29917028 23 + TSS region transcription start site region 55315
Strip2 6 29917012 to 29959681 42669 + protein coding gene striatin interacting protein 2