Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:29423555-30503661

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189 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccdc136 6 29396573 to 29426995 30422 + protein coding gene coiled-coil domain containing 136
Cpgi17232 6 29432838 to 29434143 1305 CpG island CpG island 17232
Tssr55258 6 29433131 to 29433165 34 + TSS region transcription start site region 55258
Tssr55259 6 29433174 to 29433181 7 + TSS region transcription start site region 55259
Tssr55260 6 29433248 to 29433267 19 + TSS region transcription start site region 55260
Flnc 6 29433256 to 29461883 28627 + protein coding gene filamin C, gamma
Cpgi17233 6 29467588 to 29468315 727 CpG island CpG island 17233
Tssr55261 6 29467733 to 29467764 31 + TSS region transcription start site region 55261
Tssr55262 6 29467772 to 29467810 38 + TSS region transcription start site region 55262
Atp6v1f 6 29467783 to 29470509 2726 + protein coding gene ATPase, H+ transporting, lysosomal V1 subunit F
Tssr55263 6 29468076 to 29468113 37 + TSS region transcription start site region 55263
Atp6v1fnb 6 29471437 to 29473429 1992 + protein coding gene Atp6v1f neighbor
Tssr55264 6 29471457 to 29471497 40 + TSS region transcription start site region 55264
Tssr55265 6 29471499 to 29471518 19 + TSS region transcription start site region 55265
Kcp 6 29473162 to 29507952 34790 - protein coding gene kielin/chordin-like protein
Cpgi17234 6 29473846 to 29474475 629 CpG island CpG island 17234
Tssr60094 6 29478397 to 29478407 10 - TSS region transcription start site region 60094
D6Rck39 6 29478879 to 29479010 131 DNA segment DNA segment, Chr 6, Rockefeller University 39
Cpgi17235 6 29484945 to 29485238 293 CpG island CpG island 17235
Gm26484 6 29487717 to 29487822 105 - snRNA gene predicted gene, 26484
Cpgi17236 6 29495839 to 29496869 1030 CpG island CpG island 17236
Cpgi17237 6 29507587 to 29508094 507 CpG island CpG island 17237
Gm26627 6 29507725 to 29509698 1973 + antisense lncRNA gene predicted gene, 26627
Tssr60095 6 29507946 to 29507974 28 - TSS region transcription start site region 60095
Tssr60096 6 29507979 to 29507992 13 - TSS region transcription start site region 60096
Tssr55266 6 29526090 to 29526158 68 + TSS region transcription start site region 55266
Cpgi17238 6 29526097 to 29527846 1749 CpG island CpG island 17238
Tssr60097 6 29526460 to 29526499 39 - TSS region transcription start site region 60097
Tssr60098 6 29526532 to 29526554 22 - TSS region transcription start site region 60098
Irf5 6 29526625 to 29541871 15246 + protein coding gene interferon regulatory factor 5
Tssr55267 6 29526665 to 29526676 11 + TSS region transcription start site region 55267
Tssr55268 6 29526684 to 29526685 1 + TSS region transcription start site region 55268
Tssr55269 6 29526690 to 29526724 34 + TSS region transcription start site region 55269
Tssr55270 6 29526741 to 29526752 11 + TSS region transcription start site region 55270
Tssr55271 6 29528060 to 29528116 56 + TSS region transcription start site region 55271
Tssr55272 6 29529277 to 29529296 19 + TSS region transcription start site region 55272
Tssr55273 6 29529308 to 29529325 17 + TSS region transcription start site region 55273
Tssr55274 6 29531151 to 29531172 21 + TSS region transcription start site region 55274
Tssr55275 6 29531258 to 29531270 12 + TSS region transcription start site region 55275
Tssr55276 6 29534009 to 29534025 16 + TSS region transcription start site region 55276
Tssr55277 6 29534062 to 29534088 26 + TSS region transcription start site region 55277
Tssr55278 6 29535372 to 29535383 11 + TSS region transcription start site region 55278
Tssr55279 6 29536028 to 29536064 36 + TSS region transcription start site region 55279
Tssr55280 6 29537059 to 29537076 17 + TSS region transcription start site region 55280
Tnpo3 6 29540827 to 29609887 69060 - protein coding gene transportin 3
Tssr55281 6 29540887 to 29540891 4 + TSS region transcription start site region 55281
Tssr55282 6 29540977 to 29540983 6 + TSS region transcription start site region 55282
Gm43029 6 29546604 to 29548138 1534 - unclassified gene predicted gene 43029
Tssr60099 6 29554832 to 29554867 35 - TSS region transcription start site region 60099
Cpgi17239 6 29609029 to 29610041 1012 CpG island CpG island 17239
Tssr60100 6 29609608 to 29609642 34 - TSS region transcription start site region 60100
Tssr60101 6 29609794 to 29609805 11 - TSS region transcription start site region 60101
Tssr60102 6 29609811 to 29609872 61 - TSS region transcription start site region 60102
Gm30896 6 29675961 to 29677529 1568 + lncRNA gene predicted gene, 30896
Gm38780 6 29686901 to 29688724 1823 - lncRNA gene predicted gene, 38780
Cpgi17240 6 29693833 to 29694925 1092 CpG island CpG island 17240
Tssr55283 6 29694182 to 29694194 12 + TSS region transcription start site region 55283
Tssr55284 6 29694204 to 29694250 46 + TSS region transcription start site region 55284
Tspan33 6 29694222 to 29718559 24337 + protein coding gene tetraspanin 33
Tssr1798 6 29694251 to 29694254 3 + TSS region transcription start site region 1798
Tssr55285 6 29694255 to 29694271 16 + TSS region transcription start site region 55285
Tssr55286 6 29699033 to 29699037 4 + TSS region transcription start site region 55286
Cpgi17241 6 29718897 to 29719077 180 CpG island CpG island 17241
Cpgi17242 6 29735339 to 29736671 1332 CpG island CpG island 17242
Tssr55287 6 29735471 to 29735547 76 + TSS region transcription start site region 55287
Smo 6 29735503 to 29761365 25862 + protein coding gene smoothened, frizzled class receptor
Tssr55288 6 29735611 to 29735629 18 + TSS region transcription start site region 55288
Tssr55289 6 29735631 to 29735663 32 + TSS region transcription start site region 55289
Tssr55290 6 29735667 to 29735680 13 + TSS region transcription start site region 55290
Tssr55291 6 29736125 to 29736149 24 + TSS region transcription start site region 55291
Tssr55292 6 29746759 to 29746766 7 + TSS region transcription start site region 55292
Gm13717 6 29750761 to 29751125 364 + pseudogene predicted gene 13717
Bts2 6 29751222 to 29751334 112 QTL bladder tumor susceptibility 2
Obrq2 6 29751222 to 29751334 112 QTL obesity resistance QTL 2
Hdp1 6 29751222 to 75544489 45793267 heritable phenotypic marker high doppler 1
D6Mit159 6 29751222 to 29751334 112 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 159
Bmiq1 6 29751334 to 4503823 -25247511 QTL body mass index QTL 1
Tssr55293 6 29760901 to 29760933 32 + TSS region transcription start site region 55293
Cpgi17244 6 29767853 to 29769348 1495 CpG island CpG island 17244
Tssr55294 6 29768274 to 29768290 16 + TSS region transcription start site region 55294
Ahcyl2 6 29768379 to 29912310 143931 + protein coding gene S-adenosylhomocysteine hydrolase-like 2
Tssr55295 6 29768473 to 29768542 69 + TSS region transcription start site region 55295
Tssr55296 6 29768550 to 29768555 5 + TSS region transcription start site region 55296
Tssr55297 6 29773006 to 29773010 4 + TSS region transcription start site region 55297
Tssr55298 6 29792133 to 29792136 3 + TSS region transcription start site region 55298
Tssr55299 6 29831943 to 29831946 3 + TSS region transcription start site region 55299
Tssr55300 6 29853746 to 29853790 44 + TSS region transcription start site region 55300
Tssr1799 6 29853961 to 29853969 8 + TSS region transcription start site region 1799
Tssr55301 6 29853983 to 29853998 15 + TSS region transcription start site region 55301
Tssr55302 6 29854021 to 29854057 36 + TSS region transcription start site region 55302
Tssr55303 6 29854060 to 29854073 13 + TSS region transcription start site region 55303
Tssr55304 6 29859374 to 29859381 7 + TSS region transcription start site region 55304
Tssr55305 6 29859662 to 29859684 22 + TSS region transcription start site region 55305
Tssr55306 6 29859686 to 29859701 15 + TSS region transcription start site region 55306
Tssr55307 6 29870263 to 29870270 7 + TSS region transcription start site region 55307
Tssr55308 6 29870295 to 29870300 5 + TSS region transcription start site region 55308
Tssr55309 6 29870558 to 29870602 44 + TSS region transcription start site region 55309
Tssr55310 6 29876707 to 29876710 3 + TSS region transcription start site region 55310
Tssr55311 6 29887918 to 29887921 3 + TSS region transcription start site region 55311
Tssr55312 6 29894726 to 29894733 7 + TSS region transcription start site region 55312
Tssr55313 6 29894751 to 29894776 25 + TSS region transcription start site region 55313
Tssr55314 6 29894787 to 29894799 12 + TSS region transcription start site region 55314
4930528J11Rik 6 29912023 to 29915633 3610 - unclassified gene RIKEN cDNA 4930528J11 gene
Tssr1800 6 29914703 to 29914707 4 + TSS region transcription start site region 1800
Cpgi17245 6 29916565 to 29917743 1178 CpG island CpG island 17245
Tssr55315 6 29917005 to 29917028 23 + TSS region transcription start site region 55315
Strip2 6 29917012 to 29959681 42669 + protein coding gene striatin interacting protein 2
D6Mit205 6 29938837 to 29938981 144 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 205
Tssr55316 6 29957549 to 29957551 2 + TSS region transcription start site region 55316
Gm13724 6 29960950 to 29961762 812 + pseudogene predicted gene 13724
Gm24536 6 29963555 to 29963661 106 + snRNA gene predicted gene, 24536
Gm13725 6 29963644 to 29963850 206 + pseudogene predicted gene 13725
Gm31103 6 29965247 to 29968561 3314 + lncRNA gene predicted gene, 31103
Cpgi17246 6 29985136 to 29985784 648 CpG island CpG island 17246
Tssr55317 6 29985296 to 29985308 12 + TSS region transcription start site region 55317
Tssr55318 6 29985317 to 29985344 27 + TSS region transcription start site region 55318
Smkr-ps 6 29985329 to 29993531 8202 + pseudogene smal lysine rich protein 1, pseudogene
Tssr55319 6 29985346 to 29985353 7 + TSS region transcription start site region 55319
Tssr55320 6 29985357 to 29985366 9 + TSS region transcription start site region 55320
Gm23049 6 29988388 to 29988489 101 + miRNA gene predicted gene, 23049
Tssr55321 6 30027196 to 30027200 4 + TSS region transcription start site region 55321
1700080G18Rik 6 30047400 to 30049144 1744 - protein coding gene RIKEN cDNA 1700080G18 gene
Cpgi17247 6 30047532 to 30049084 1552 CpG island CpG island 17247
Tssr60103 6 30047923 to 30047954 31 - TSS region transcription start site region 60103
Tssr55322 6 30047979 to 30048049 70 + TSS region transcription start site region 55322
Nrf1 6 30047988 to 30153458 105470 + protein coding gene nuclear respiratory factor 1
Tssr55323 6 30048062 to 30048078 16 + TSS region transcription start site region 55323
Tssr55324 6 30065519 to 30065522 3 + TSS region transcription start site region 55324
Tssr1801 6 30079941 to 30079946 5 + TSS region transcription start site region 1801
Tssr55325 6 30102140 to 30102149 9 + TSS region transcription start site region 55325
Tssr55326 6 30102153 to 30102160 7 + TSS region transcription start site region 55326
Tssr60104 6 30135954 to 30135957 3 - TSS region transcription start site region 60104
Gm25580 6 30143801 to 30144127 326 - unclassified non-coding RNA gene predicted gene, 25580
Tssr60105 6 30147094 to 30147108 14 - TSS region transcription start site region 60105
Tssr60106 6 30157565 to 30157569 4 - TSS region transcription start site region 60106
Mirc35hg 6 30158640 to 30174125 15485 - lncRNA gene microRNA cluster 35, host gene
Mirc35 6 30165918 to 30169737 3819 complex/cluster/region microRNA cluster 35, including Mir182 through Mir183
Mir182 6 30165918 to 30165992 74 - miRNA gene microRNA 182
Mirc40 6 30169446 to 30169737 291 complex/cluster/region micro RNA cluster 40, including Mir96 through Mir183
Mir96 6 30169446 to 30169551 105 - miRNA gene microRNA 96
Mir183 6 30169668 to 30169737 69 - miRNA gene microRNA 183
Tssr55327 6 30172860 to 30172870 10 + TSS region transcription start site region 55327
Rncr4 6 30172893 to 30175126 2233 + lincRNA gene retina expressed non-coding RNA 4
Cpgi17248 6 30172916 to 30176582 3666 CpG island CpG island 17248
Tssr60107 6 30174076 to 30174079 3 - TSS region transcription start site region 60107
Tssr60108 6 30174100 to 30174109 9 - TSS region transcription start site region 60108
Tssr60109 6 30174117 to 30174136 19 - TSS region transcription start site region 60109
Tssr60110 6 30174728 to 30174746 18 - TSS region transcription start site region 60110
Tssr55328 6 30175257 to 30175264 7 + TSS region transcription start site region 55328
Tssr55329 6 30175277 to 30175282 5 + TSS region transcription start site region 55329
Tssr55330 6 30175325 to 30175341 16 + TSS region transcription start site region 55330
Tssr55331 6 30175357 to 30175379 22 + TSS region transcription start site region 55331
Tssr55332 6 30175380 to 30175399 19 + TSS region transcription start site region 55332
Tssr60111 6 30175733 to 30175736 3 - TSS region transcription start site region 60111
Tssr55333 6 30175815 to 30175835 20 + TSS region transcription start site region 55333
Tssr55334 6 30176481 to 30176485 4 + TSS region transcription start site region 55334
BB283400 6 30176623 to 30178046 1423 + lncRNA gene expressed sequence BB283400
Cpgi17249 6 30177534 to 30177714 180 CpG island CpG island 17249
Gm31221 6 30178155 to 30181830 3675 + lncRNA gene predicted gene, 31221
Cpgi17250 6 30178300 to 30178582 282 CpG island CpG island 17250
Cpgi17251 6 30179567 to 30179752 185 CpG island CpG island 17251
Tssr55335 6 30186605 to 30186612 7 + TSS region transcription start site region 55335
Cpgi17252 6 30205624 to 30206056 432 CpG island CpG island 17252
Ube2h 6 30211289 to 30304539 93250 - protein coding gene ubiquitin-conjugating enzyme E2H
Tssr60112 6 30245410 to 30245414 4 - TSS region transcription start site region 60112
Tssr60113 6 30254050 to 30254060 10 - TSS region transcription start site region 60113
Tssr60114 6 30302614 to 30302619 5 - TSS region transcription start site region 60114
Cpgi17253 6 30303780 to 30304825 1045 CpG island CpG island 17253
Tssr60115 6 30304513 to 30304570 57 - TSS region transcription start site region 60115
1700095J07Rik 6 30304605 to 30331779 27174 + lincRNA gene RIKEN cDNA 1700095J07 gene
Tssr1802 6 30304610 to 30304618 8 + TSS region transcription start site region 1802
Gm25625 6 30347371 to 30347466 95 - rRNA gene predicted gene, 25625
Tssr55336 6 30353024 to 30353030 6 + TSS region transcription start site region 55336
Tssr55337 6 30359472 to 30359475 3 + TSS region transcription start site region 55337
Zc3hc1 6 30366380 to 30391028 24648 - protein coding gene zinc finger, C3HC type 1
n-R5s161 6 30379101 to 30379214 113 + rRNA gene nuclear encoded rRNA 5S 161
Cpgi17254 6 30390668 to 30391120 452 CpG island CpG island 17254
Tssr60116 6 30390997 to 30391029 32 - TSS region transcription start site region 60116
Cpgi17255 6 30401522 to 30402434 912 CpG island CpG island 17255
Tssr55338 6 30401866 to 30401965 99 + TSS region transcription start site region 55338
Klhdc10 6 30401868 to 30455179 53311 + protein coding gene kelch domain containing 10
Cpgi17256 6 30459739 to 30460259 520 CpG island CpG island 17256
Tssr55339 6 30460980 to 30460989 9 + TSS region transcription start site region 55339
1700012C14Rik 6 30460985 to 30463313 2328 + lincRNA gene RIKEN cDNA 1700012C14 gene
Tssr55340 6 30460991 to 30461000 9 + TSS region transcription start site region 55340
Tssr60117 6 30477548 to 30477552 4 - TSS region transcription start site region 60117
Tmem209 6 30481022 to 30509783 28761 - protein coding gene transmembrane protein 209
D6Ertd15e 6 30483990 to 30484210 220 DNA segment DNA segment, Chr 6, ERATO Doi 15, expressed
Tssr60118 6 30502555 to 30502558 3 - TSS region transcription start site region 60118