Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:29408076-29528113

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccdc136 6 29396573 to 29426995 30422 + protein coding gene coiled-coil domain containing 136
Tssr60093 6 29415548 to 29415554 6 - TSS region transcription start site region 60093
Tssr55255 6 29419199 to 29419206 7 + TSS region transcription start site region 55255
Tssr55256 6 29419272 to 29419282 10 + TSS region transcription start site region 55256
Tssr55257 6 29419992 to 29420002 10 + TSS region transcription start site region 55257
Cpgi17232 6 29432838 to 29434143 1305 CpG island CpG island 17232
Tssr55258 6 29433131 to 29433165 34 + TSS region transcription start site region 55258
Tssr55259 6 29433174 to 29433181 7 + TSS region transcription start site region 55259
Tssr55260 6 29433248 to 29433267 19 + TSS region transcription start site region 55260
Flnc 6 29433256 to 29461883 28627 + protein coding gene filamin C, gamma
Cpgi17233 6 29467588 to 29468315 727 CpG island CpG island 17233
Tssr55261 6 29467733 to 29467764 31 + TSS region transcription start site region 55261
Tssr55262 6 29467772 to 29467810 38 + TSS region transcription start site region 55262
Atp6v1f 6 29467783 to 29470509 2726 + protein coding gene ATPase, H+ transporting, lysosomal V1 subunit F
Tssr55263 6 29468076 to 29468113 37 + TSS region transcription start site region 55263
Atp6v1fnb 6 29471437 to 29473429 1992 + protein coding gene Atp6v1f neighbor
Tssr55264 6 29471457 to 29471497 40 + TSS region transcription start site region 55264
Tssr55265 6 29471499 to 29471518 19 + TSS region transcription start site region 55265
Kcp 6 29473162 to 29507952 34790 - protein coding gene kielin/chordin-like protein
Cpgi17234 6 29473846 to 29474475 629 CpG island CpG island 17234
Tssr60094 6 29478397 to 29478407 10 - TSS region transcription start site region 60094
D6Rck39 6 29478879 to 29479010 131 DNA segment DNA segment, Chr 6, Rockefeller University 39
Cpgi17235 6 29484945 to 29485238 293 CpG island CpG island 17235
Gm26484 6 29487717 to 29487822 105 - snRNA gene predicted gene, 26484
Cpgi17236 6 29495839 to 29496869 1030 CpG island CpG island 17236
Cpgi17237 6 29507587 to 29508094 507 CpG island CpG island 17237
Gm26627 6 29507725 to 29509698 1973 + antisense lncRNA gene predicted gene, 26627
Tssr60095 6 29507946 to 29507974 28 - TSS region transcription start site region 60095
Tssr60096 6 29507979 to 29507992 13 - TSS region transcription start site region 60096
Tssr55266 6 29526090 to 29526158 68 + TSS region transcription start site region 55266
Cpgi17238 6 29526097 to 29527846 1749 CpG island CpG island 17238
Tssr60097 6 29526460 to 29526499 39 - TSS region transcription start site region 60097
Tssr60098 6 29526532 to 29526554 22 - TSS region transcription start site region 60098
Irf5 6 29526625 to 29541871 15246 + protein coding gene interferon regulatory factor 5
Tssr55267 6 29526665 to 29526676 11 + TSS region transcription start site region 55267
Tssr55268 6 29526684 to 29526685 1 + TSS region transcription start site region 55268
Tssr55269 6 29526690 to 29526724 34 + TSS region transcription start site region 55269
Tssr55270 6 29526741 to 29526752 11 + TSS region transcription start site region 55270
Tssr55271 6 29528060 to 29528116 56 + TSS region transcription start site region 55271