Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:29359832-29749867

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Calu 6 29348106 to 29376675 28569 + protein coding gene calumenin
Tssr55245 6 29361410 to 29361425 15 + TSS region transcription start site region 55245
Tssr55246 6 29366117 to 29366134 17 + TSS region transcription start site region 55246
Tssr55247 6 29374477 to 29374480 3 + TSS region transcription start site region 55247
Opn1sw 6 29376671 to 29380513 3842 - protein coding gene opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan)
Tssr60089 6 29380426 to 29380435 9 - TSS region transcription start site region 60089
Tssr60090 6 29380468 to 29380485 17 - TSS region transcription start site region 60090
Tssr60091 6 29380517 to 29380520 3 - TSS region transcription start site region 60091
n-TPagg6 6 29388824 to 29388895 71 + tRNA gene nuclear encoded tRNA proline 6 (anticodon AGG)
Cpgi17230 6 29396090 to 29396968 878 CpG island CpG island 17230
Ccdc136 6 29396573 to 29426995 30422 + protein coding gene coiled-coil domain containing 136
Tssr55248 6 29396576 to 29396658 82 + TSS region transcription start site region 55248
Gm26220 6 29396617 to 29396705 88 + miRNA gene predicted gene, 26220
Tssr55249 6 29396665 to 29396666 1 + TSS region transcription start site region 55249
Gm44354 6 29397434 to 29397576 142 - miRNA gene predicted gene, 44354
Tssr55250 6 29397545 to 29397556 11 + TSS region transcription start site region 55250
Tssr60092 6 29397659 to 29397661 2 - TSS region transcription start site region 60092
Tssr55251 6 29398920 to 29398931 11 + TSS region transcription start site region 55251
Tssr55252 6 29398959 to 29398966 7 + TSS region transcription start site region 55252
Tssr55253 6 29399198 to 29399211 13 + TSS region transcription start site region 55253
Cpgi17231 6 29402734 to 29403080 346 CpG island CpG island 17231
Tssr55254 6 29402871 to 29402921 50 + TSS region transcription start site region 55254
Tssr60093 6 29415548 to 29415554 6 - TSS region transcription start site region 60093
Tssr55255 6 29419199 to 29419206 7 + TSS region transcription start site region 55255
Tssr55256 6 29419272 to 29419282 10 + TSS region transcription start site region 55256
Tssr55257 6 29419992 to 29420002 10 + TSS region transcription start site region 55257
Cpgi17232 6 29432838 to 29434143 1305 CpG island CpG island 17232
Tssr55258 6 29433131 to 29433165 34 + TSS region transcription start site region 55258
Tssr55259 6 29433174 to 29433181 7 + TSS region transcription start site region 55259
Tssr55260 6 29433248 to 29433267 19 + TSS region transcription start site region 55260
Flnc 6 29433256 to 29461883 28627 + protein coding gene filamin C, gamma
Cpgi17233 6 29467588 to 29468315 727 CpG island CpG island 17233
Tssr55261 6 29467733 to 29467764 31 + TSS region transcription start site region 55261
Tssr55262 6 29467772 to 29467810 38 + TSS region transcription start site region 55262
Atp6v1f 6 29467783 to 29470509 2726 + protein coding gene ATPase, H+ transporting, lysosomal V1 subunit F
Tssr55263 6 29468076 to 29468113 37 + TSS region transcription start site region 55263
Atp6v1fnb 6 29471437 to 29473429 1992 + protein coding gene Atp6v1f neighbor
Tssr55264 6 29471457 to 29471497 40 + TSS region transcription start site region 55264
Tssr55265 6 29471499 to 29471518 19 + TSS region transcription start site region 55265
Kcp 6 29473162 to 29507952 34790 - protein coding gene kielin/chordin-like protein
Cpgi17234 6 29473846 to 29474475 629 CpG island CpG island 17234
Tssr60094 6 29478397 to 29478407 10 - TSS region transcription start site region 60094
D6Rck39 6 29478879 to 29479010 131 DNA segment DNA segment, Chr 6, Rockefeller University 39
Cpgi17235 6 29484945 to 29485238 293 CpG island CpG island 17235
Gm26484 6 29487717 to 29487822 105 - snRNA gene predicted gene, 26484
Cpgi17236 6 29495839 to 29496869 1030 CpG island CpG island 17236
Cpgi17237 6 29507587 to 29508094 507 CpG island CpG island 17237
Gm26627 6 29507725 to 29509698 1973 + antisense lncRNA gene predicted gene, 26627
Tssr60095 6 29507946 to 29507974 28 - TSS region transcription start site region 60095
Tssr60096 6 29507979 to 29507992 13 - TSS region transcription start site region 60096
Tssr55266 6 29526090 to 29526158 68 + TSS region transcription start site region 55266
Cpgi17238 6 29526097 to 29527846 1749 CpG island CpG island 17238
Tssr60097 6 29526460 to 29526499 39 - TSS region transcription start site region 60097
Tssr60098 6 29526532 to 29526554 22 - TSS region transcription start site region 60098
Irf5 6 29526625 to 29541871 15246 + protein coding gene interferon regulatory factor 5
Tssr55267 6 29526665 to 29526676 11 + TSS region transcription start site region 55267
Tssr55268 6 29526684 to 29526685 1 + TSS region transcription start site region 55268
Tssr55269 6 29526690 to 29526724 34 + TSS region transcription start site region 55269
Tssr55270 6 29526741 to 29526752 11 + TSS region transcription start site region 55270
Tssr55271 6 29528060 to 29528116 56 + TSS region transcription start site region 55271
Tssr55272 6 29529277 to 29529296 19 + TSS region transcription start site region 55272
Tssr55273 6 29529308 to 29529325 17 + TSS region transcription start site region 55273
Tssr55274 6 29531151 to 29531172 21 + TSS region transcription start site region 55274
Tssr55275 6 29531258 to 29531270 12 + TSS region transcription start site region 55275
Tssr55276 6 29534009 to 29534025 16 + TSS region transcription start site region 55276
Tssr55277 6 29534062 to 29534088 26 + TSS region transcription start site region 55277
Tssr55278 6 29535372 to 29535383 11 + TSS region transcription start site region 55278
Tssr55279 6 29536028 to 29536064 36 + TSS region transcription start site region 55279
Tssr55280 6 29537059 to 29537076 17 + TSS region transcription start site region 55280
Tnpo3 6 29540827 to 29609887 69060 - protein coding gene transportin 3
Tssr55281 6 29540887 to 29540891 4 + TSS region transcription start site region 55281
Tssr55282 6 29540977 to 29540983 6 + TSS region transcription start site region 55282
Gm43029 6 29546604 to 29548138 1534 - unclassified gene predicted gene 43029
Tssr60099 6 29554832 to 29554867 35 - TSS region transcription start site region 60099
Cpgi17239 6 29609029 to 29610041 1012 CpG island CpG island 17239
Tssr60100 6 29609608 to 29609642 34 - TSS region transcription start site region 60100
Tssr60101 6 29609794 to 29609805 11 - TSS region transcription start site region 60101
Tssr60102 6 29609811 to 29609872 61 - TSS region transcription start site region 60102
Gm30896 6 29675961 to 29677529 1568 + lncRNA gene predicted gene, 30896
Gm38780 6 29686901 to 29688724 1823 - lncRNA gene predicted gene, 38780
Cpgi17240 6 29693833 to 29694925 1092 CpG island CpG island 17240
Tssr55283 6 29694182 to 29694194 12 + TSS region transcription start site region 55283
Tssr55284 6 29694204 to 29694250 46 + TSS region transcription start site region 55284
Tspan33 6 29694222 to 29718559 24337 + protein coding gene tetraspanin 33
Tssr1798 6 29694251 to 29694254 3 + TSS region transcription start site region 1798
Tssr55285 6 29694255 to 29694271 16 + TSS region transcription start site region 55285
Tssr55286 6 29699033 to 29699037 4 + TSS region transcription start site region 55286
Cpgi17241 6 29718897 to 29719077 180 CpG island CpG island 17241
Cpgi17242 6 29735339 to 29736671 1332 CpG island CpG island 17242
Tssr55287 6 29735471 to 29735547 76 + TSS region transcription start site region 55287
Smo 6 29735503 to 29761365 25862 + protein coding gene smoothened, frizzled class receptor
Tssr55288 6 29735611 to 29735629 18 + TSS region transcription start site region 55288
Tssr55289 6 29735631 to 29735663 32 + TSS region transcription start site region 55289
Tssr55290 6 29735667 to 29735680 13 + TSS region transcription start site region 55290
Tssr55291 6 29736125 to 29736149 24 + TSS region transcription start site region 55291
Tssr55292 6 29746759 to 29746766 7 + TSS region transcription start site region 55292