Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:29288143-29408159

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44 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fam71f2 6 29279593 to 29290680 11087 + protein coding gene family with sequence similarity 71, member F2
D6Mit267 6 29302648 to 29302764 116 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 267
4930445G23Rik 6 29310771 to 29312222 1451 unclassified gene RIKEN cDNA 4930445G23 gene
Tssr55230 6 29313457 to 29313472 15 + TSS region transcription start site region 55230
Tssr55231 6 29313475 to 29313491 16 + TSS region transcription start site region 55231
Tssr55232 6 29313507 to 29313541 34 + TSS region transcription start site region 55232
Tssr55233 6 29319133 to 29319153 20 + TSS region transcription start site region 55233
Fam71f1 6 29319140 to 29336019 16879 + protein coding gene family with sequence similarity 71, member F1
Tssr55234 6 29319191 to 29319194 3 + TSS region transcription start site region 55234
Tssr55235 6 29319229 to 29319237 8 + TSS region transcription start site region 55235
Tssr55236 6 29319246 to 29319251 5 + TSS region transcription start site region 55236
Tssr55237 6 29319261 to 29319272 11 + TSS region transcription start site region 55237
Tssr55238 6 29319273 to 29319284 11 + TSS region transcription start site region 55238
Gm17172 6 29322804 to 29323206 402 - antisense lncRNA gene predicted gene 17172
Tssr55239 6 29323288 to 29323333 45 + TSS region transcription start site region 55239
Cpgi17228 6 29335664 to 29335829 165 CpG island CpG island 17228
Cpgi17229 6 29347529 to 29348526 997 CpG island CpG island 17229
Calu 6 29348106 to 29376675 28569 + protein coding gene calumenin
Tssr55240 6 29348114 to 29348123 9 + TSS region transcription start site region 55240
Tssr55241 6 29348136 to 29348142 6 + TSS region transcription start site region 55241
Tssr55242 6 29348143 to 29348159 16 + TSS region transcription start site region 55242
Tssr55243 6 29348163 to 29348165 2 + TSS region transcription start site region 55243
Tssr55244 6 29348175 to 29348184 9 + TSS region transcription start site region 55244
Tssr55245 6 29361410 to 29361425 15 + TSS region transcription start site region 55245
Tssr55246 6 29366117 to 29366134 17 + TSS region transcription start site region 55246
Tssr55247 6 29374477 to 29374480 3 + TSS region transcription start site region 55247
Opn1sw 6 29376671 to 29380513 3842 - protein coding gene opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan)
Tssr60089 6 29380426 to 29380435 9 - TSS region transcription start site region 60089
Tssr60090 6 29380468 to 29380485 17 - TSS region transcription start site region 60090
Tssr60091 6 29380517 to 29380520 3 - TSS region transcription start site region 60091
n-TPagg6 6 29388824 to 29388895 71 + tRNA gene nuclear encoded tRNA proline 6 (anticodon AGG)
Cpgi17230 6 29396090 to 29396968 878 CpG island CpG island 17230
Ccdc136 6 29396573 to 29426995 30422 + protein coding gene coiled-coil domain containing 136
Tssr55248 6 29396576 to 29396658 82 + TSS region transcription start site region 55248
Gm26220 6 29396617 to 29396705 88 + miRNA gene predicted gene, 26220
Tssr55249 6 29396665 to 29396666 1 + TSS region transcription start site region 55249
Gm44354 6 29397434 to 29397576 142 - miRNA gene predicted gene, 44354
Tssr55250 6 29397545 to 29397556 11 + TSS region transcription start site region 55250
Tssr60092 6 29397659 to 29397661 2 - TSS region transcription start site region 60092
Tssr55251 6 29398920 to 29398931 11 + TSS region transcription start site region 55251
Tssr55252 6 29398959 to 29398966 7 + TSS region transcription start site region 55252
Tssr55253 6 29399198 to 29399211 13 + TSS region transcription start site region 55253
Cpgi17231 6 29402734 to 29403080 346 CpG island CpG island 17231
Tssr55254 6 29402871 to 29402921 50 + TSS region transcription start site region 55254